Rh3DG322600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000109
Physical Location & Seq
Reverse (-)
35105658 .. 35106134
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG322600.1

Sequence Viewer

Length: 477 bp
ATGGAATTTGAGTTTGTGCTTGGGGTTTTTGCAAAATTCCATTTAAAAAAGGATCGATTCATGGGTTATTGTCGCGTTTGTGGATTGTTGGAGCACACTACTCAAGATTGTGGTGTTCCGTCGGTGTTTACGCTAGCTGCAGCGAGCGCGGCAGATGCTTCTACTCCAAACCCTAACCCTAATGCTCCTAGAGTTTCCGGTCTTTCTGGACTGACTTATGCGCGAGGTGATGGTGGCACCCTACTACTGACTAGCAGGTTCGACGTTGGGTTTCCAGCGACATGGGCACGTCTCATCTTCCCGTCGCTGGTGGTGAATCCGTTCAAAACACCGGTGCTTTTCTCTGTGCCAGGCTTAACTGCCCAACTCCTGGATAGGCAAGCTATTGTGCTGTTTGGGAACCTTAACAACGATCATCTCCTAACCTCGGATGAGACTGCTATGGTGATCATGCTGGAGGAAGTGCAACCGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.1

Weight (kDa)

5.5

Isoelectric Point (pI)

22.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 246
AccB1I GGYRCC 1 cut(s) 236
AccB7I CCANNNNNTGG 1 cut(s) 370
AccII CGCG 3 cut(s) 75, 149, 223
AciI CCGC 1 cut(s) 149
AclWI GGATC 1 cut(s) 60
AcsI RAATTY 2 cut(s) 5, 35
AfiI CCNNNNNNNGG 3 cut(s) 307, 370, 427
AgeI ACCGGT 2 cut(s) 331, 469
AgsI TTSAA 1 cut(s) 325
AjiI CACGTC 1 cut(s) 290
AjnI CCWGG 2 cut(s) 349, 369
AluBI AGCT 2 cut(s) 137, 383
AluI AGCT 2 cut(s) 137, 383
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 2 cut(s) 296, 428
AlwI GGATC 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 137, 140
ApoI RAATTY 2 cut(s) 5, 35
AsiGI ACCGGT 2 cut(s) 331, 469
Asp700I GAANNNNTTC 1 cut(s) 320
AspLEI GCGC 2 cut(s) 149, 223
AsuHPI GGTGA 3 cut(s) 239, 325, 457
AsuNHI GCTAGC 1 cut(s) 133
BaeGI GKGCMC 1 cut(s) 289
BanI GGYRCC 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 2 cut(s) 124, 152
BccI CCATC 1 cut(s) 224
BciT130I CCWGG 2 cut(s) 351, 371
BclI TGATCA 1 cut(s) 447
BcoDI GTCTC 2 cut(s) 296, 428
BfaI CTAG 3 cut(s) 134, 189, 252
BfmI CTRYAG 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 246
BisI GCNGC 3 cut(s) 138, 141, 150
BlsI GCNGC 3 cut(s) 139, 142, 151
Bme1390I CCNGG 2 cut(s) 351, 371
BmgBI CACGTC 1 cut(s) 290
BmiI GGNNCC 2 cut(s) 238, 401
BmrFI CCNGG 2 cut(s) 351, 371
BmsI GCATC 1 cut(s) 145
BmtI GCTAGC 1 cut(s) 137
BpmI CTGGAG 1 cut(s) 476
BpuEI CTTGAG 1 cut(s) 87
Bsa29I ATCGAT 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 426
BsaWI WCCGGW 3 cut(s) 197, 331, 469
Bsc4I CCNNNNNNNGG 3 cut(s) 307, 370, 427
Bse118I RCCGGY 2 cut(s) 331, 469
BseBI CCWGG 2 cut(s) 351, 371
BseCI ATCGAT 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 426
BseGI GGATG 1 cut(s) 436
BseLI CCNNNNNNNGG 3 cut(s) 307, 370, 427
BseSI GKGCMC 1 cut(s) 289
BseXI GCAGC 2 cut(s) 124, 152
Bsh1236I CGCG 3 cut(s) 75, 149, 223
BshNI GGYRCC 1 cut(s) 236
BshTI ACCGGT 2 cut(s) 331, 469
BshVI ATCGAT 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 3 cut(s) 198, 332, 470
BslI CCNNNNNNNGG 3 cut(s) 307, 370, 427
BsmAI GTCTC 2 cut(s) 296, 428
BsmBI CGTCTC 1 cut(s) 296
Bsp1286I GDGCHC 2 cut(s) 96, 289
Bsp143I GATC 3 cut(s) 52, 412, 447
BspACI CCGC 1 cut(s) 149
BspDI ATCGAT 1 cut(s) 55
BspFNI CGCG 3 cut(s) 75, 149, 223
BspLI GGNNCC 2 cut(s) 238, 401
BspMAI CTGCAG 1 cut(s) 142
BspMI ACCTGC 1 cut(s) 246
BspOI GCTAGC 1 cut(s) 137
BspPI GGATC 1 cut(s) 60
BspT107I GGYRCC 1 cut(s) 236
BsrFI RCCGGY 2 cut(s) 331, 469
BssAI RCCGGY 2 cut(s) 331, 469
BssECI CCNNGG 1 cut(s) 426
BssMI GATC 3 cut(s) 52, 412, 447
Bst2UI CCWGG 2 cut(s) 351, 371
BstC8I GCNNGC 3 cut(s) 135, 145, 381
BstF5I GGATG 1 cut(s) 436
BstFNI CGCG 3 cut(s) 75, 149, 223
BstHHI GCGC 2 cut(s) 149, 223
BstKTI GATC 3 cut(s) 55, 415, 450
BstMAI GTCTC 2 cut(s) 296, 428
BstMBI GATC 3 cut(s) 52, 412, 447
BstMWI GCNNNNNNNGC 4 cut(s) 146, 149, 155, 284
BstNI CCWGG 2 cut(s) 351, 371
BstSCI CCNGG 2 cut(s) 349, 369
BstSFI CTRYAG 1 cut(s) 138
BstSLI GKGCMC 1 cut(s) 289
BstUI CGCG 3 cut(s) 75, 149, 223
BstV1I GCAGC 2 cut(s) 124, 152
BstXI CCANNNNNNTGG 1 cut(s) 282
Bsu15I ATCGAT 1 cut(s) 55
BsuTUI ATCGAT 1 cut(s) 55
BtrI CACGTC 1 cut(s) 290
BtsCI GGATG 1 cut(s) 436
BveI ACCTGC 1 cut(s) 246
Cac8I GCNNGC 3 cut(s) 135, 145, 381
CfoI GCGC 2 cut(s) 149, 223
Cfr10I RCCGGY 2 cut(s) 331, 469
ClaI ATCGAT 1 cut(s) 55
CspAI ACCGGT 2 cut(s) 331, 469
CviAII CATG 3 cut(s) 61, 282, 451
CviJI RGCY 3 cut(s) 137, 354, 383
CviKI_1 RGCY 3 cut(s) 137, 354, 383
DpnI GATC 3 cut(s) 54, 414, 449
DpnII GATC 3 cut(s) 52, 412, 447
DraI TTTAAA 1 cut(s) 45
EcoRII CCWGG 2 cut(s) 349, 369
Esp3I CGTCTC 1 cut(s) 296
FaeI CATG 3 cut(s) 64, 285, 454
FaiI YATR 5 cut(s) 62, 219, 283, 443, 452
FatI CATG 3 cut(s) 60, 281, 450
FbaI TGATCA 1 cut(s) 447
Fnu4HI GCNGC 3 cut(s) 138, 141, 150
FokI GGATG 1 cut(s) 443
Fsp4HI GCNGC 3 cut(s) 138, 141, 150
FspBI CTAG 3 cut(s) 134, 189, 252
GlaI GCGC 2 cut(s) 148, 222
GluI GCNGC 3 cut(s) 138, 141, 150
GsuI CTGGAG 1 cut(s) 476
HapII CCGG 3 cut(s) 198, 332, 470
HhaI GCGC 2 cut(s) 149, 223
Hin1II CATG 3 cut(s) 64, 285, 454
Hin6I GCGC 2 cut(s) 147, 221
HinP1I GCGC 2 cut(s) 147, 221
HinfI GANTC 2 cut(s) 57, 316
HpaII CCGG 3 cut(s) 198, 332, 470
HphI GGTGA 3 cut(s) 239, 325, 457
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 1 cut(s) 430
Hpy188III TCNNGA 2 cut(s) 104, 207
Hpy8I GTNNAC 1 cut(s) 129
Hpy99I CGWCG 3 cut(s) 124, 266, 307
HpyCH4IV ACGT 2 cut(s) 264, 289
HpyCH4V TGCA 3 cut(s) 32, 140, 466
HpyF10VI GCNNNNNNNGC 4 cut(s) 146, 149, 155, 284
HpySE526I ACGT 2 cut(s) 264, 289
Hsp92II CATG 3 cut(s) 64, 285, 454
HspAI GCGC 2 cut(s) 147, 221
Ksp22I TGATCA 1 cut(s) 447
Kzo9I GATC 3 cut(s) 52, 412, 447
LmnI GCTCC 2 cut(s) 91, 190
Lsp1109I GCAGC 2 cut(s) 124, 152
LweI GCATC 1 cut(s) 145
MaeI CTAG 3 cut(s) 134, 189, 252
MaeII ACGT 2 cut(s) 264, 289
MalI GATC 3 cut(s) 54, 414, 449
MboI GATC 3 cut(s) 52, 412, 447
MboII GAAGA 1 cut(s) 289
MhlI GDGCHC 2 cut(s) 96, 289
MluCI AATT 2 cut(s) 5, 35
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 3 cut(s) 218, 436, 451
MroXI GAANNNNTTC 1 cut(s) 320
MseI TTAA 3 cut(s) 44, 356, 405
MspI CCGG 3 cut(s) 198, 332, 470
MspR9I CCNGG 2 cut(s) 351, 371
MvaI CCWGG 2 cut(s) 351, 371
MvnI CGCG 3 cut(s) 75, 149, 223
MwoI GCNNNNNNNGC 4 cut(s) 146, 149, 155, 284
NdeII GATC 3 cut(s) 52, 412, 447
NheI GCTAGC 1 cut(s) 133
NlaIII CATG 3 cut(s) 64, 285, 454
NlaIV GGNNCC 2 cut(s) 238, 401
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 2 cut(s) 57, 316
PflMI CCANNNNNTGG 1 cut(s) 370
PfoI TCCNGGA 1 cut(s) 369
PinAI ACCGGT 2 cut(s) 331, 469
PkrI GCNGC 3 cut(s) 139, 142, 151
Psp6I CCWGG 2 cut(s) 349, 369
PspGI CCWGG 2 cut(s) 349, 369
PspN4I GGNNCC 2 cut(s) 238, 401
PstI CTGCAG 1 cut(s) 142
SaqAI TTAA 3 cut(s) 44, 356, 405
SatI GCNGC 3 cut(s) 138, 141, 150
Sau3AI GATC 3 cut(s) 52, 412, 447
ScrFI CCNGG 2 cut(s) 351, 371
SduI GDGCHC 2 cut(s) 96, 289
SetI ASST 8 cut(s) 139, 229, 260, 267, 292, 385, 405, 428
SfaNI GCATC 1 cut(s) 145
SfcI CTRYAG 1 cut(s) 138
SgrAI CRCCGGYG 1 cut(s) 331
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
Sse9I AATT 2 cut(s) 5, 35
SsiI CCGC 1 cut(s) 149
SspMI CTAG 3 cut(s) 134, 189, 252
StyD4I CCNGG 2 cut(s) 349, 369
TaiI ACGT 2 cut(s) 267, 292
TaqI TCGA 2 cut(s) 55, 261
TasI AATT 2 cut(s) 5, 35
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 2 cut(s) 57, 316
Tru1I TTAA 3 cut(s) 44, 356, 405
Tru9I TTAA 3 cut(s) 44, 356, 405
TseI GCWGC 2 cut(s) 137, 140
TspDTI ATGAA 1 cut(s) 49
TspGWI ACGGA 2 cut(s) 108, 309
Van91I CCANNNNNTGG 1 cut(s) 370
XapI RAATTY 2 cut(s) 5, 35
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 3 cut(s) 134, 189, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.