Rh4CG236300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000109
Physical Location & Seq
Reverse (-)
48059103 .. 48059776
674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG236300.1

Sequence Viewer

Length: 315 bp
ATGCTTGAAAATATAGATGCAATCAATCACACCATCGTTGTCATTTTGAAGATGGTTGACCAAGTCTCCGCACGTCTCGCAGCAGTGCTTGCTAGTTCTGACAACATGAAAGTCTTGTTTAGGGTCGTTGGCAAGGCGGCGATTTCAGATCATTCATATGCAGTTAAAAGGTTGTTGTCAATTAAGAAGAAGCTTGATCTCGATGGCCTTCATGAAGACCATGGCTTTCGTATGGGCCTTAAGAATAGACTTTCGATCTGGGGACAAGGAGCCTATTATGTGCTCAAGTTTGTGAATGAGTCAAAATGGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.74

Weight (kDa)

9.64

Isoelectric Point (pI)

17.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 69, 137
AflII CTTAAG 1 cut(s) 239
AgsI TTSAA 2 cut(s) 8, 49
AjiI CACGTC 1 cut(s) 74
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 2 cut(s) 70, 80
AoxI GGCC 2 cut(s) 205, 235
ApeKI GCWGC 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 235
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 92
BccI CCATC 3 cut(s) 41, 46, 197
BcoDI GTCTC 2 cut(s) 70, 80
BfaI CTAG 1 cut(s) 93
BfrI CTTAAG 1 cut(s) 239
BisI GCNGC 2 cut(s) 81, 138
BlsI GCNGC 2 cut(s) 82, 139
BmgBI CACGTC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 271
BmsI GCATC 1 cut(s) 7
BpiI GAAGAC 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 220
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
BseDI CCNNGG 1 cut(s) 220
BseXI GCAGC 1 cut(s) 92
BshFI GGCC 2 cut(s) 207, 237
BsiHKAI GWGCWC 1 cut(s) 285
BslFI GGGAC 1 cut(s) 276
BsmAI GTCTC 2 cut(s) 70, 80
BsmBI CGTCTC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 276
BsnI GGCC 2 cut(s) 207, 237
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 3 cut(s) 148, 196, 255
Bsp19I CCATGG 1 cut(s) 220
BspACI CCGC 2 cut(s) 69, 137
BspANI GGCC 2 cut(s) 207, 237
BspHI TCATGA 1 cut(s) 211
BspLI GGNNCC 1 cut(s) 271
BspTI CTTAAG 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 3 cut(s) 148, 196, 255
BssT1I CCWWGG 1 cut(s) 220
BstAFI CTTAAG 1 cut(s) 239
BstAPI GCANNNNNTGC 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 90
BstDSI CCRYGG 1 cut(s) 220
BstKTI GATC 3 cut(s) 151, 199, 258
BstMAI GTCTC 2 cut(s) 70, 80
BstMBI GATC 3 cut(s) 148, 196, 255
BstMWI GCNNNNNNNGC 2 cut(s) 77, 89
BstV1I GCAGC 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 222
BsuRI GGCC 2 cut(s) 207, 237
BtgI CCRYGG 1 cut(s) 220
BtrI CACGTC 1 cut(s) 74
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 90
CciI TCATGA 1 cut(s) 211
Cfr13I GGNCC 1 cut(s) 235
CviAII CATG 3 cut(s) 106, 212, 221
CviJI RGCY 5 cut(s) 193, 207, 225, 237, 272
CviKI_1 RGCY 5 cut(s) 193, 207, 225, 237, 272
DpnI GATC 3 cut(s) 150, 198, 257
DpnII GATC 3 cut(s) 148, 196, 255
Eco130I CCWWGG 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 220
Esp3I CGTCTC 1 cut(s) 80
FaeI CATG 3 cut(s) 109, 215, 224
FaiI YATR 8 cut(s) 14, 107, 157, 159, 213, 222, 233, 279
FaqI GGGAC 1 cut(s) 276
FatI CATG 3 cut(s) 105, 211, 220
FauNDI CATATG 1 cut(s) 157
Fnu4HI GCNGC 2 cut(s) 81, 138
Fsp4HI GCNGC 2 cut(s) 81, 138
FspBI CTAG 1 cut(s) 93
GluI GCNGC 2 cut(s) 81, 138
HaeIII GGCC 2 cut(s) 207, 237
Hin1II CATG 3 cut(s) 109, 215, 224
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 1 cut(s) 299
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 2 cut(s) 100, 148
Hpy188III TCNNGA 2 cut(s) 200, 212
Hpy8I GTNNAC 1 cut(s) 58
HpyAV CCTTC 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 2 cut(s) 20, 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 89
HpySE526I ACGT 1 cut(s) 73
Hsp92II CATG 3 cut(s) 109, 215, 224
Kzo9I GATC 3 cut(s) 148, 196, 255
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 1 cut(s) 244
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 1 cut(s) 7
MaeI CTAG 1 cut(s) 93
MaeII ACGT 1 cut(s) 73
MalI GATC 3 cut(s) 150, 198, 257
MboI GATC 3 cut(s) 148, 196, 255
MboII GAAGA 3 cut(s) 61, 199, 227
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 1 cut(s) 180
MlyI GAGTC 1 cut(s) 308
MseI TTAA 3 cut(s) 165, 183, 240
MslI CAYNNNNRTG 1 cut(s) 156
MspCI CTTAAG 1 cut(s) 239
MwoI GCNNNNNNNGC 2 cut(s) 77, 89
NcoI CCATGG 1 cut(s) 220
NdeI CATATG 1 cut(s) 157
NdeII GATC 3 cut(s) 148, 196, 255
NlaIII CATG 3 cut(s) 109, 215, 224
NlaIV GGNNCC 1 cut(s) 271
PagI TCATGA 1 cut(s) 211
PflFI GACNNNGTC 1 cut(s) 62
PkrI GCNGC 2 cut(s) 82, 139
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 271
PspPI GGNCC 1 cut(s) 235
PsyI GACNNNGTC 1 cut(s) 62
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 3 cut(s) 165, 183, 240
SatI GCNGC 2 cut(s) 81, 138
Sau3AI GATC 3 cut(s) 148, 196, 255
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 1 cut(s) 308
SduI GDGCHC 1 cut(s) 285
SetI ASST 3 cut(s) 76, 173, 195
SfaNI GCATC 1 cut(s) 7
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 2 cut(s) 239, 284
SmoI CTYRAG 2 cut(s) 239, 284
Sse9I AATT 1 cut(s) 180
SsiI CCGC 2 cut(s) 69, 137
SspMI CTAG 1 cut(s) 93
StyI CCWWGG 1 cut(s) 220
TaiI ACGT 1 cut(s) 76
TaqI TCGA 2 cut(s) 201, 254
TasI AATT 1 cut(s) 180
TauI GCSGC 1 cut(s) 140
Tru1I TTAA 3 cut(s) 165, 183, 240
Tru9I TTAA 3 cut(s) 165, 183, 240
TscAI CASTG 1 cut(s) 90
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 4 cut(s) 122, 144, 200, 228
TspRI CASTG 1 cut(s) 90
Tth111I GACNNNGTC 1 cut(s) 62
Vha464I CTTAAG 1 cut(s) 239
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.