RLG00000006806

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000109
Physical Location & Seq
Forward (+)
10704457 .. 10705058
602 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006806

Sequence Viewer

Length: 516 bp
ATGGTTGATGAAATGTTAGCTAGGCTGGTTGCGACCCTTGCCATCATGGAGGATGAGAGGGCGTCGTTTGGACCGGTGGGTGCTGCAGTGGTGTTTGATTTCCTCCTTGTGAATGGGCACCTGCTTTGGGGACGGCAAACAAGAAGGCGTTCATGGCCACAATGGCTTCAATGTGGGGTTGTCGTTGGCTCTGTTCTCTACGAGGGCAGTAAAATTGATAGGTGCAACGGATTGGGAGATTCGGGCCTGGATCAGGCGCAGCTAGGTTTTGAACCAGAGCTGGTATTGAAGAGCTCCAATGGTGTGATCTTGGTGTCTCTTGCAAAGAAGTCCAAGGTGAGAAGGCCTCCAGGCAGGAAGAATAGCCCTACTGGAGGTTTGAAGCCCAAAAAGTTGAAGATGCAGGGTGATTCTAAGCCTAGGAAGAAGCGGGGTTTTAAGTCAAATATGGTGGAGACTCCGACAATGGATCAAGGAGCATGCAGCGGAGGCCGTGAAAGAGGACATGGAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

18.61

Weight (kDa)

10.07

Isoelectric Point (pI)

35.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 129
Acc36I ACCTGC 1 cut(s) 129
AccB1I GGYRCC 1 cut(s) 117
AciI CCGC 2 cut(s) 430, 486
AclWI GGATC 2 cut(s) 258, 477
AcoI YGGCCR 1 cut(s) 155
AcyI GRCGYC 1 cut(s) 62
AfiI CCNNNNNNNGG 3 cut(s) 127, 253, 374
AgeI ACCGGT 1 cut(s) 73
AgsI TTSAA 5 cut(s) 170, 272, 289, 382, 397
AjnI CCWGG 2 cut(s) 246, 349
AluBI AGCT 4 cut(s) 20, 262, 280, 294
AluI AGCT 4 cut(s) 20, 262, 280, 294
Alw21I GWGCWC 1 cut(s) 296
Alw26I GTCTC 2 cut(s) 321, 449
AlwI GGATC 2 cut(s) 258, 477
AoxI GGCC 4 cut(s) 155, 244, 344, 490
ApeKI GCWGC 3 cut(s) 83, 259, 483
AsiGI ACCGGT 1 cut(s) 73
Asp700I GAANNNNTTC 1 cut(s) 148
AspA2I CCTAGG 1 cut(s) 419
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 2 cut(s) 71, 244
AsuHPI GGTGA 2 cut(s) 349, 419
AvaII GGWCC 1 cut(s) 71
AvrII CCTAGG 1 cut(s) 419
BaeGI GKGCMC 1 cut(s) 120
BalI TGGCCA 1 cut(s) 157
BanI GGYRCC 1 cut(s) 117
BanII GRGCYC 1 cut(s) 296
Bbv12I GWGCWC 1 cut(s) 296
BbvI GCAGC 3 cut(s) 70, 271, 495
BccI CCATC 1 cut(s) 50
BceAI ACGGC 2 cut(s) 149, 477
BciT130I CCWGG 2 cut(s) 248, 351
BcoDI GTCTC 2 cut(s) 321, 449
BfaI CTAG 3 cut(s) 21, 263, 420
BfmI CTRYAG 1 cut(s) 84
BfuAI ACCTGC 1 cut(s) 129
BglI GCCNNNNNGGC 1 cut(s) 163
BisI GCNGC 3 cut(s) 84, 260, 484
BlnI CCTAGG 1 cut(s) 419
BlsI GCNGC 3 cut(s) 85, 261, 485
Bme1390I CCNGG 2 cut(s) 248, 351
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 2 cut(s) 71, 244
BmiI GGNNCC 1 cut(s) 119
BmrFI CCNGG 2 cut(s) 248, 351
BmsI GCATC 1 cut(s) 390
BplI GAGNNNNNCTC 2 cut(s) 331, 363
BpmI CTGGAG 2 cut(s) 333, 393
BsaHI GRCGYC 1 cut(s) 62
BsaJI CCNNGG 2 cut(s) 333, 419
BsaWI WCCGGW 1 cut(s) 73
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 253, 374
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 376
BseBI CCWGG 2 cut(s) 248, 351
BseDI CCNNGG 2 cut(s) 333, 419
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 3 cut(s) 127, 253, 374
BseNI ACTGG 1 cut(s) 376
BseSI GKGCMC 1 cut(s) 120
BseXI GCAGC 3 cut(s) 70, 271, 495
BshFI GGCC 4 cut(s) 157, 246, 346, 492
BshNI GGYRCC 1 cut(s) 117
BshTI ACCGGT 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 296
BsiSI CCGG 1 cut(s) 74
BslFI GGGAC 1 cut(s) 144
BslI CCNNNNNNNGG 3 cut(s) 127, 253, 374
BsmAI GTCTC 2 cut(s) 321, 449
BsmFI GGGAC 1 cut(s) 144
BsnI GGCC 4 cut(s) 157, 246, 346, 492
Bsp1286I GDGCHC 2 cut(s) 120, 296
Bsp143I GATC 3 cut(s) 250, 306, 469
BspACI CCGC 2 cut(s) 430, 486
BspANI GGCC 4 cut(s) 157, 246, 346, 492
BspLI GGNNCC 1 cut(s) 119
BspMAI CTGCAG 1 cut(s) 88
BspMI ACCTGC 1 cut(s) 129
BspPI GGATC 2 cut(s) 258, 477
BspQI GCTCTTC 1 cut(s) 284
BspT107I GGYRCC 1 cut(s) 117
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 1 cut(s) 376
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 333, 419
BssMI GATC 3 cut(s) 250, 306, 469
BssNI GRCGYC 1 cut(s) 62
BssT1I CCWWGG 2 cut(s) 333, 419
Bst2UI CCWGG 2 cut(s) 248, 351
Bst6I CTCTTC 1 cut(s) 284
BstACI GRCGYC 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 481
BstDEI CTNAG 1 cut(s) 414
BstENI CCTNNNNNAGG 2 cut(s) 251, 372
BstF5I GGATG 1 cut(s) 58
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 3 cut(s) 253, 309, 472
BstMAI GTCTC 2 cut(s) 321, 449
BstMBI GATC 3 cut(s) 250, 306, 469
BstMWI GCNNNNNNNGC 4 cut(s) 38, 154, 163, 489
BstNI CCWGG 2 cut(s) 248, 351
BstNSI RCATGY 1 cut(s) 483
BstSCI CCNGG 2 cut(s) 246, 349
BstSFI CTRYAG 1 cut(s) 84
BstSLI GKGCMC 1 cut(s) 120
BstV1I GCAGC 3 cut(s) 70, 271, 495
BsuRI GGCC 4 cut(s) 157, 246, 346, 492
BtsCI GGATG 1 cut(s) 58
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 93
BveI ACCTGC 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 481
CfoI GCGC 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 71, 244
CseI GACGC 1 cut(s) 51
CspAI ACCGGT 1 cut(s) 73
CspCI CAANNNNNGTGG 2 cut(s) 432, 467
CviAII CATG 4 cut(s) 46, 153, 480, 506
DdeI CTNAG 1 cut(s) 414
DpnI GATC 3 cut(s) 252, 308, 471
DpnII GATC 3 cut(s) 250, 306, 469
EaeI YGGCCR 1 cut(s) 155
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
Ecl136II GAGCTC 1 cut(s) 294
Eco130I CCWWGG 2 cut(s) 333, 419
Eco147I AGGCCT 1 cut(s) 346
Eco24I GRGCYC 1 cut(s) 296
Eco47I GGWCC 1 cut(s) 71
Eco53kI GAGCTC 1 cut(s) 294
EcoICRI GAGCTC 1 cut(s) 294
EcoNI CCTNNNNNAGG 2 cut(s) 251, 372
EcoRII CCWGG 2 cut(s) 246, 349
EcoT14I CCWWGG 2 cut(s) 333, 419
EcoT38I GRGCYC 1 cut(s) 296
ErhI CCWWGG 2 cut(s) 333, 419
FaeI CATG 4 cut(s) 49, 156, 483, 509
FaiI YATR 5 cut(s) 47, 154, 449, 481, 507
FaqI GGGAC 1 cut(s) 144
FatI CATG 4 cut(s) 45, 152, 479, 505
FauI CCCGC 1 cut(s) 423
Fnu4HI GCNGC 3 cut(s) 84, 260, 484
FokI GGATG 1 cut(s) 65
FriOI GRGCYC 1 cut(s) 296
Fsp4HI GCNGC 3 cut(s) 84, 260, 484
FspBI CTAG 3 cut(s) 21, 263, 420
GlaI GCGC 1 cut(s) 258
GluI GCNGC 3 cut(s) 84, 260, 484
GsuI CTGGAG 2 cut(s) 333, 393
HaeIII GGCC 4 cut(s) 157, 246, 346, 492
HapII CCGG 1 cut(s) 74
HgaI GACGC 1 cut(s) 51
HhaI GCGC 1 cut(s) 259
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 4 cut(s) 49, 156, 483, 509
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HinfI GANTC 3 cut(s) 239, 410, 457
HpaII CCGG 1 cut(s) 74
HphI GGTGA 2 cut(s) 349, 419
Hpy188I TCNGA 1 cut(s) 462
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 2 cut(s) 138, 336
HpyCH4V TGCA 5 cut(s) 86, 225, 323, 403, 483
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 154, 163, 489
HpyF3I CTNAG 1 cut(s) 414
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 4 cut(s) 49, 156, 483, 509
HspAI GCGC 1 cut(s) 257
Kzo9I GATC 3 cut(s) 250, 306, 469
LguI GCTCTTC 1 cut(s) 284
LmnI GCTCC 2 cut(s) 299, 476
Lsp1109I GCAGC 3 cut(s) 70, 271, 495
LweI GCATC 1 cut(s) 390
MaeI CTAG 3 cut(s) 21, 263, 420
MalI GATC 3 cut(s) 252, 308, 471
MboI GATC 3 cut(s) 250, 306, 469
MboII GAAGA 4 cut(s) 301, 370, 409, 436
MhlI GDGCHC 2 cut(s) 120, 296
MlsI TGGCCA 1 cut(s) 157
MluCI AATT 1 cut(s) 213
MluNI TGGCCA 1 cut(s) 157
MlyI GAGTC 1 cut(s) 451
MmeI TCCRAC 1 cut(s) 485
MnlI CCTC 8 cut(s) 43, 51, 113, 196, 357, 368, 482, 494
Mox20I TGGCCA 1 cut(s) 157
MroXI GAANNNNTTC 1 cut(s) 148
MscI TGGCCA 1 cut(s) 157
MseI TTAA 2 cut(s) 438, 514
Msp20I TGGCCA 1 cut(s) 157
MspA1I CMGCKG 1 cut(s) 486
MspI CCGG 1 cut(s) 74
MspR9I CCNGG 2 cut(s) 248, 351
MvaI CCWGG 2 cut(s) 248, 351
MwoI GCNNNNNNNGC 4 cut(s) 38, 154, 163, 489
NdeII GATC 3 cut(s) 250, 306, 469
NlaIII CATG 4 cut(s) 49, 156, 483, 509
NlaIV GGNNCC 1 cut(s) 119
NspI RCATGY 1 cut(s) 483
PaeI GCATGC 1 cut(s) 483
PaqCI CACCTGC 1 cut(s) 129
PceI AGGCCT 1 cut(s) 346
PciSI GCTCTTC 1 cut(s) 284
PdmI GAANNNNTTC 1 cut(s) 148
PfeI GAWTC 2 cut(s) 239, 410
PinAI ACCGGT 1 cut(s) 73
PkrI GCNGC 3 cut(s) 85, 261, 485
PleI GAGTC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 451
Psp124BI GAGCTC 1 cut(s) 296
Psp6I CCWGG 2 cut(s) 246, 349
PspGI CCWGG 2 cut(s) 246, 349
PspN4I GGNNCC 1 cut(s) 119
PspPI GGNCC 2 cut(s) 71, 244
PstI CTGCAG 1 cut(s) 88
SacI GAGCTC 1 cut(s) 296
SapI GCTCTTC 1 cut(s) 284
SaqAI TTAA 2 cut(s) 438, 514
SatI GCNGC 3 cut(s) 84, 260, 484
Sau3AI GATC 3 cut(s) 250, 306, 469
Sau96I GGNCC 2 cut(s) 71, 244
SchI GAGTC 1 cut(s) 451
ScrFI CCNGG 2 cut(s) 248, 351
SduI GDGCHC 2 cut(s) 120, 296
SetI ASST 9 cut(s) 22, 123, 224, 264, 268, 282, 296, 339, 379
SfaNI GCATC 1 cut(s) 390
SfcI CTRYAG 1 cut(s) 84
SinI GGWCC 1 cut(s) 71
SphI GCATGC 1 cut(s) 483
Sse9I AATT 1 cut(s) 213
SseBI AGGCCT 1 cut(s) 346
SsiI CCGC 2 cut(s) 430, 486
SspMI CTAG 3 cut(s) 21, 263, 420
SstI GAGCTC 1 cut(s) 296
StuI AGGCCT 1 cut(s) 346
StyD4I CCNGG 2 cut(s) 246, 349
StyI CCWWGG 2 cut(s) 333, 419
TasI AATT 1 cut(s) 213
TfiI GAWTC 2 cut(s) 239, 410
Tru1I TTAA 2 cut(s) 438, 514
Tru9I TTAA 2 cut(s) 438, 514
TscAI CASTG 1 cut(s) 93
TseI GCWGC 3 cut(s) 83, 259, 483
TspDTI ATGAA 2 cut(s) 24, 141
TspGWI ACGGA 1 cut(s) 243
TspRI CASTG 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 71
XagI CCTNNNNNAGG 2 cut(s) 251, 372
XceI RCATGY 1 cut(s) 483
XmaJI CCTAGG 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 148
XspI CTAG 3 cut(s) 21, 263, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.