Rmu_sc0013116.1_g000002

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013116.1
OG0000109
Physical Location & Seq
Reverse (-)
6447 .. 7328
882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013116.1_g000002.1.cds

Sequence Viewer

Length: 810 bp
atggttgactacgtttctggatgccttgctgctgctcttgctatctccgataagggtatgaagagggttgatccaaaggctttcatgggaaccatgtccactgtatggggtctcaaacaatgcttgtctatcaaggagcatggcaaccactttgtcttgcattttactattatggaagagaaaaacaagatcgtctctggcggcccatggttttttggcaaagcgatgtttgttatgtcagactatgatgggctgggggatgctctccaggttcccattctttcgttccctacttgggtggagattcttagacttccatcagtcttaatgactaagaaggcggtggctatggtgggtgcgatgttggggaaaattatgcagctagataagacggggatccgacgtgggatgaaagcttgggtctggatcacacatatgctcgttgatcctatcaagcaggcctaccctccgctagtctttgactttgatgaaggggtttcagcaacgctcaggttcaaatatgaatgtgtggtgggtttctatagggtttgtggtttgttagaacacccaaaagaaggttgtgttgggcctccagatgtctttgcaacggtagctttcatggagggtaaggctaaccctaaccctagccctttgactccagggatctctcttttgtatcatggtgcaggtccgagtcggatttttggtatggggagtagctcgagtgtgggacaagtacctttcatgcttaagccatcctctctgctgggttctctcattagtttcaatgctaaggtcgtagtgcgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

269

Amino Acids

29.34

Weight (kDa)

9.15

Isoelectric Point (pI)

27.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 677
AccB7I CCANNNNNTGG 1 cut(s) 105
AciI CCGC 3 cut(s) 201, 341, 470
AclWI GGATC 6 cut(s) 65, 391, 404, 434, 440, 671
AfaI GTAC 1 cut(s) 738
AfiI CCNNNNNNNGG 3 cut(s) 105, 295, 575
AflII CTTAAG 1 cut(s) 749
AgsI TTSAA 2 cut(s) 517, 787
AjiI CACGTC 1 cut(s) 404
AjnI CCWGG 2 cut(s) 267, 658
AjuI GAANNNNNNNTTGG 2 cut(s) 567, 599
AluBI AGCT 4 cut(s) 382, 416, 614, 720
AluI AGCT 4 cut(s) 382, 416, 614, 720
Alw26I GTCTC 2 cut(s) 116, 199
AlwI GGATC 6 cut(s) 65, 391, 404, 434, 440, 671
Ama87I CYCGRG 1 cut(s) 721
AoxI GGCC 3 cut(s) 202, 459, 587
ApeKI GCWGC 3 cut(s) 29, 32, 379
AspLEI GCGC 1 cut(s) 807
AspS9I GGNCC 3 cut(s) 203, 587, 689
AvaI CYCGRG 1 cut(s) 721
AvaII GGWCC 1 cut(s) 689
BamHI GGATCC 1 cut(s) 396
BbvI GCAGC 3 cut(s) 16, 19, 391
BccI CCATC 3 cut(s) 242, 325, 763
BciT130I CCWGG 2 cut(s) 269, 660
BcoDI GTCTC 2 cut(s) 116, 199
BfaI CTAG 4 cut(s) 383, 473, 645, 808
BfmI CTRYAG 1 cut(s) 541
BfrI CTTAAG 1 cut(s) 749
BfuAI ACCTGC 1 cut(s) 677
BisI GCNGC 4 cut(s) 30, 33, 202, 380
BlsI GCNGC 4 cut(s) 31, 34, 203, 381
Bme1390I CCNGG 2 cut(s) 269, 660
Bme18I GGWCC 1 cut(s) 689
BmeT110I CYCGRG 1 cut(s) 721
BmgBI CACGTC 1 cut(s) 404
BmgT120I GGNCC 3 cut(s) 203, 587, 689
BmiI GGNNCC 3 cut(s) 91, 273, 398
BmrFI CCNGG 2 cut(s) 269, 660
BmsI GCATC 2 cut(s) 11, 250
BpmI CTGGAG 3 cut(s) 251, 576, 642
Bpu10I CCTNAGC 2 cut(s) 509, 792
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 206, 659
Bsc4I CCNNNNNNNGG 3 cut(s) 105, 295, 575
BseBI CCWGG 2 cut(s) 269, 660
BseDI CCNNGG 2 cut(s) 206, 659
BseGI GGATG 4 cut(s) 26, 265, 414, 755
BseLI CCNNNNNNNGG 3 cut(s) 105, 295, 575
BseMII CTCAG 1 cut(s) 523
BseXI GCAGC 3 cut(s) 16, 19, 391
BseYI CCCAGC 2 cut(s) 253, 766
BsgI GTGCAG 1 cut(s) 705
BshFI GGCC 3 cut(s) 204, 461, 589
BsiHKCI CYCGRG 1 cut(s) 721
BslFI GGGAC 1 cut(s) 744
BslI CCNNNNNNNGG 3 cut(s) 105, 295, 575
BsmAI GTCTC 2 cut(s) 116, 199
BsmBI CGTCTC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 744
BsnI GGCC 3 cut(s) 204, 461, 589
Bso31I GGTCTC 1 cut(s) 116
BsoBI CYCGRG 1 cut(s) 721
Bsp143I GATC 6 cut(s) 70, 189, 396, 426, 445, 663
Bsp19I CCATGG 1 cut(s) 206
BspACI CCGC 3 cut(s) 201, 341, 470
BspANI GGCC 3 cut(s) 204, 461, 589
BspCNI CTCAG 1 cut(s) 522
BspLI GGNNCC 3 cut(s) 91, 273, 398
BspMI ACCTGC 1 cut(s) 677
BspPI GGATC 6 cut(s) 65, 391, 404, 434, 440, 671
BspTI CTTAAG 1 cut(s) 749
BspTNI GGTCTC 1 cut(s) 116
BssECI CCNNGG 2 cut(s) 206, 659
BssMI GATC 6 cut(s) 70, 189, 396, 426, 445, 663
BssT1I CCWWGG 1 cut(s) 206
Bst2UI CCWGG 2 cut(s) 269, 660
Bst4CI ACNGT 2 cut(s) 103, 610
Bst6I CTCTTC 2 cut(s) 56, 171
BstAFI CTTAAG 1 cut(s) 749
BstC8I GCNNGC 1 cut(s) 459
BstDEI CTNAG 4 cut(s) 308, 333, 509, 792
BstDSI CCRYGG 1 cut(s) 206
BstF5I GGATG 4 cut(s) 26, 265, 414, 755
BstHHI GCGC 1 cut(s) 807
BstKTI GATC 6 cut(s) 73, 192, 399, 429, 448, 666
BstMAI GTCTC 2 cut(s) 116, 199
BstMBI GATC 6 cut(s) 70, 189, 396, 426, 445, 663
BstMWI GCNNNNNNNGC 2 cut(s) 38, 611
BstNI CCWGG 2 cut(s) 269, 660
BstSCI CCNGG 2 cut(s) 267, 658
BstSFI CTRYAG 1 cut(s) 541
BstV1I GCAGC 3 cut(s) 16, 19, 391
BstX2I RGATCY 2 cut(s) 396, 663
BstYI RGATCY 2 cut(s) 396, 663
BsuRI GGCC 3 cut(s) 204, 461, 589
BtgI CCRYGG 1 cut(s) 206
BtgZI GCGATG 2 cut(s) 239, 374
BtrI CACGTC 1 cut(s) 404
BtsCI GGATG 4 cut(s) 26, 265, 414, 755
BtsIMutI CAGTG 1 cut(s) 99
BveI ACCTGC 1 cut(s) 677
Cac8I GCNNGC 1 cut(s) 459
CfoI GCGC 1 cut(s) 807
Cfr13I GGNCC 3 cut(s) 203, 587, 689
Csp6I GTAC 1 cut(s) 737
CviAII CATG 7 cut(s) 85, 94, 140, 207, 619, 680, 745
CviQI GTAC 1 cut(s) 737
DdeI CTNAG 4 cut(s) 308, 333, 509, 792
DpnI GATC 6 cut(s) 72, 191, 398, 428, 447, 665
DpnII GATC 6 cut(s) 70, 189, 396, 426, 445, 663
Eam1104I CTCTTC 2 cut(s) 56, 171
EarI CTCTTC 2 cut(s) 56, 171
Eco130I CCWWGG 1 cut(s) 206
Eco147I AGGCCT 1 cut(s) 461
Eco31I GGTCTC 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 689
Eco88I CYCGRG 1 cut(s) 721
EcoRII CCWGG 2 cut(s) 267, 658
EcoT14I CCWWGG 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 206
Esp3I CGTCTC 1 cut(s) 199
FaeI CATG 7 cut(s) 88, 97, 143, 210, 622, 683, 748
FaqI GGGAC 1 cut(s) 744
FatI CATG 7 cut(s) 84, 93, 139, 206, 618, 679, 744
FauNDI CATATG 1 cut(s) 435
Fnu4HI GCNGC 4 cut(s) 30, 33, 202, 380
FokI GGATG 4 cut(s) 33, 272, 421, 742
Fsp4HI GCNGC 4 cut(s) 30, 33, 202, 380
FspBI CTAG 4 cut(s) 383, 473, 645, 808
GlaI GCGC 1 cut(s) 806
GluI GCNGC 4 cut(s) 30, 33, 202, 380
GsaI CCCAGC 2 cut(s) 257, 770
GsuI CTGGAG 3 cut(s) 251, 576, 642
HaeIII GGCC 3 cut(s) 204, 461, 589
HhaI GCGC 1 cut(s) 807
Hin1II CATG 7 cut(s) 88, 97, 143, 210, 622, 683, 748
Hin6I GCGC 1 cut(s) 805
HinP1I GCGC 1 cut(s) 805
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HindIII AAGCTT 1 cut(s) 414
HinfI GANTC 3 cut(s) 304, 655, 694
Hpy166II GTNNAC 2 cut(s) 7, 99
Hpy188I TCNGA 5 cut(s) 49, 241, 401, 693, 699
Hpy188III TCNNGA 3 cut(s) 18, 424, 593
Hpy8I GTNNAC 2 cut(s) 7, 99
Hpy99I CGWCG 1 cut(s) 405
HpyAV CCTTC 3 cut(s) 331, 485, 569
HpyCH4III ACNGT 2 cut(s) 103, 610
HpyCH4IV ACGT 2 cut(s) 12, 403
HpyCH4V TGCA 4 cut(s) 160, 379, 605, 686
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 611
HpyF3I CTNAG 4 cut(s) 308, 333, 509, 792
HpySE526I ACGT 2 cut(s) 12, 403
Hsp92II CATG 7 cut(s) 88, 97, 143, 210, 622, 683, 748
HspAI GCGC 1 cut(s) 805
Kzo9I GATC 6 cut(s) 70, 189, 396, 426, 445, 663
LmnI GCTCC 1 cut(s) 136
Lsp1109I GCAGC 3 cut(s) 16, 19, 391
LweI GCATC 2 cut(s) 11, 250
MaeI CTAG 4 cut(s) 383, 473, 645, 808
MaeII ACGT 2 cut(s) 12, 403
MalI GATC 6 cut(s) 72, 191, 398, 428, 447, 665
MboI GATC 6 cut(s) 70, 189, 396, 426, 445, 663
MboII GAAGA 2 cut(s) 73, 188
MflI RGATCY 2 cut(s) 396, 663
MluCI AATT 1 cut(s) 372
MlyI GAGTC 2 cut(s) 649, 703
MmeI TCCRAC 2 cut(s) 424, 677
MnlI CCTC 5 cut(s) 57, 477, 600, 616, 769
MseI TTAA 2 cut(s) 326, 750
MslI CAYNNNNRTG 1 cut(s) 434
MspCI CTTAAG 1 cut(s) 749
MspR9I CCNGG 2 cut(s) 269, 660
MvaI CCWGG 2 cut(s) 269, 660
MwoI GCNNNNNNNGC 2 cut(s) 38, 611
NcoI CCATGG 1 cut(s) 206
NdeI CATATG 1 cut(s) 435
NdeII GATC 6 cut(s) 70, 189, 396, 426, 445, 663
NlaIII CATG 7 cut(s) 88, 97, 143, 210, 622, 683, 748
NlaIV GGNNCC 3 cut(s) 91, 273, 398
PaeR7I CTCGAG 1 cut(s) 721
PceI AGGCCT 1 cut(s) 461
PfeI GAWTC 1 cut(s) 304
PflMI CCANNNNNTGG 1 cut(s) 105
PkrI GCNGC 4 cut(s) 31, 34, 203, 381
PleI GAGTC 2 cut(s) 649, 702
PpsI GAGTC 2 cut(s) 649, 702
Psp6I CCWGG 2 cut(s) 267, 658
PspFI CCCAGC 2 cut(s) 253, 766
PspGI CCWGG 2 cut(s) 267, 658
PspN4I GGNNCC 3 cut(s) 91, 273, 398
PspPI GGNCC 3 cut(s) 203, 587, 689
PspXI VCTCGAGB 1 cut(s) 721
PsuI RGATCY 2 cut(s) 396, 663
RsaI GTAC 1 cut(s) 738
RsaNI GTAC 1 cut(s) 737
RseI CAYNNNNRTG 1 cut(s) 434
SaqAI TTAA 2 cut(s) 326, 750
SatI GCNGC 4 cut(s) 30, 33, 202, 380
Sau3AI GATC 6 cut(s) 70, 189, 396, 426, 445, 663
Sau96I GGNCC 3 cut(s) 203, 587, 689
SchI GAGTC 2 cut(s) 649, 703
ScrFI CCNGG 2 cut(s) 269, 660
SfaNI GCATC 2 cut(s) 11, 250
SfcI CTRYAG 1 cut(s) 541
Sfr274I CTCGAG 1 cut(s) 721
SinI GGWCC 1 cut(s) 689
SlaI CTCGAG 1 cut(s) 721
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 2 cut(s) 721, 749
SmoI CTYRAG 2 cut(s) 721, 749
Sse9I AATT 1 cut(s) 372
SseBI AGGCCT 1 cut(s) 461
SsiI CCGC 3 cut(s) 201, 341, 470
SspMI CTAG 4 cut(s) 383, 473, 645, 808
StuI AGGCCT 1 cut(s) 461
StyD4I CCNGG 2 cut(s) 267, 658
StyI CCWWGG 1 cut(s) 206
TaaI ACNGT 2 cut(s) 103, 610
TaiI ACGT 2 cut(s) 15, 406
TaqI TCGA 1 cut(s) 722
TasI AATT 1 cut(s) 372
TauI GCSGC 1 cut(s) 204
TfiI GAWTC 1 cut(s) 304
Tru1I TTAA 2 cut(s) 326, 750
Tru9I TTAA 2 cut(s) 326, 750
TscAI CASTG 1 cut(s) 106
TseI GCWGC 3 cut(s) 29, 32, 379
TspDTI ATGAA 7 cut(s) 73, 74, 425, 504, 537, 607, 733
TspRI CASTG 1 cut(s) 106
Van91I CCANNNNNTGG 1 cut(s) 105
Vha464I CTTAAG 1 cut(s) 749
VpaK11BI GGWCC 1 cut(s) 689
XhoI CTCGAG 1 cut(s) 721
XspI CTAG 4 cut(s) 383, 473, 645, 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.