RLG00000030996

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000109
Physical Location & Seq
Reverse (-)
1274453 .. 1275490
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030996

Sequence Viewer

Length: 843 bp
ATGGTCGTGGAGGTTTCTGTTAGATTTGCGGCTGCGCTGGCTATCACTGACAATGGTTGGGTTTCATTCCAGGCCTTCGGAGACGTGGTTGTCTTAAGCTACTCATACATCGTGGGACGGCTGCTTGCGAGAAAGAAAAAGCCTGATTTCAAAGCTCTTATACGGATTATGGCTCCGGTTTGGGGACTGAAAAATCATCCCTCGATGAGGGCGCAAGAGGATAGGTACGTGCTACGTTTTACAAAGGCGAAGGAAAGGCTGCACATCGTGTCCGGTGATCTGTGGTTCTATGGGTTTCTTTTAGTCCTGATGATAAATAAGGCTACAACAGTGCTGGGTGTGATGCTGGGTCATGTTCTACAGTTGGACAAGGCACGGCGGCGCTATCTCATCCCTAAACATAAGCTGGACTTGTCTGGTGTGCAAGTGGTCAACAACTTTGGCTTAGGGTTGCAACAAGCAAGTGCTTCATCTGGTTTGGGTAACCTTGACCCTAACCCTGATACAGGGGCTGGGAGGGGCTCTAACTCAGGATACTCGTCAACAAATGTGGGCAGACTGGTGGCTCAAGATTTGAGCCATAACCCTTTCCAGCCTGTGCCTTCGTCTTTTACTTTCTCTTTAATAGGCATCTCTGTTGCAGATTTGGCTCCTCAACTCAATAGGTTCCGCGCTCCGGCCTTTGTAATTCTCAAACCAGCCAAAGAGCATCTTGATGTTATCATATTGCAGGCTCTGTTTGGCGTGAAGCACCATGCTTCTACCAGGATGGTGACGTACAACAAGATAACAAAATATGAGGCTTCATCCTCTGTCTTGGCTCCCCTAGAGCTGAAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

281

Amino Acids

30.86

Weight (kDa)

10.09

Isoelectric Point (pI)

30.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 36 - 98 2.2e-07 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 89
AccII CGCG 1 cut(s) 672
AciI CCGC 3 cut(s) 29, 379, 670
AcsI RAATTY 1 cut(s) 836
AdeI CACNNNGTG 1 cut(s) 268
AfaI GTAC 2 cut(s) 227, 779
AfiI CCNNNNNNNGG 4 cut(s) 182, 207, 506, 676
AflII CTTAAG 1 cut(s) 94
AgsI TTSAA 1 cut(s) 151
AjiI CACGTC 1 cut(s) 85
AjnI CCWGG 2 cut(s) 69, 764
AluBI AGCT 4 cut(s) 99, 155, 406, 832
AluI AGCT 4 cut(s) 99, 155, 406, 832
Alw26I GTCTC 1 cut(s) 75
AlwNI CAGNNNCTG 2 cut(s) 512, 736
AoxI GGCC 2 cut(s) 72, 678
ApeKI GCWGC 3 cut(s) 32, 121, 259
ApoI RAATTY 1 cut(s) 836
AspLEI GCGC 4 cut(s) 37, 214, 384, 674
AsuHPI GGTGA 2 cut(s) 287, 784
BanII GRGCYC 1 cut(s) 524
BbvI GCAGC 3 cut(s) 19, 108, 246
BccI CCATC 1 cut(s) 763
BceAI ACGGC 2 cut(s) 134, 392
BciT130I CCWGG 2 cut(s) 71, 766
BciVI GTATCC 1 cut(s) 527
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 2 cut(s) 827, 841
BfmI CTRYAG 1 cut(s) 359
BfoI RGCGCY 1 cut(s) 385
BfrI CTTAAG 1 cut(s) 94
BfuI GTATCC 1 cut(s) 527
BisI GCNGC 5 cut(s) 30, 33, 122, 260, 380
BlsI GCNGC 5 cut(s) 31, 34, 123, 261, 381
Bme1390I CCNGG 2 cut(s) 71, 766
BmgBI CACGTC 1 cut(s) 85
BmiI GGNNCC 4 cut(s) 174, 651, 668, 822
BmrFI CCNGG 2 cut(s) 71, 766
BmsI GCATC 3 cut(s) 333, 639, 718
Bpu10I CCTNAGC 1 cut(s) 445
BpuEI CTTGAG 1 cut(s) 552
BsaAI YACGTR 1 cut(s) 229
BsaWI WCCGGW 2 cut(s) 175, 272
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 4 cut(s) 182, 207, 506, 676
Bse1I ACTGG 1 cut(s) 564
BseBI CCWGG 2 cut(s) 71, 766
BseGI GGATG 4 cut(s) 196, 390, 774, 806
BseLI CCNNNNNNNGG 4 cut(s) 182, 207, 506, 676
BseMII CTCAG 1 cut(s) 543
BseNI ACTGG 1 cut(s) 564
BseRI GAGGAG 1 cut(s) 642
BseXI GCAGC 3 cut(s) 19, 108, 246
BseYI CCCAGC 3 cut(s) 334, 346, 512
BsgI GTGCAG 1 cut(s) 245
Bsh1236I CGCG 1 cut(s) 672
BshFI GGCC 2 cut(s) 74, 680
BsiSI CCGG 3 cut(s) 176, 273, 677
BslFI GGGAC 2 cut(s) 129, 198
BslI CCNNNNNNNGG 4 cut(s) 182, 207, 506, 676
BsmAI GTCTC 1 cut(s) 75
BsmBI CGTCTC 1 cut(s) 75
BsmFI GGGAC 2 cut(s) 129, 198
BsnI GGCC 2 cut(s) 74, 680
Bsp1286I GDGCHC 1 cut(s) 524
Bsp143I GATC 1 cut(s) 277
BspACI CCGC 3 cut(s) 29, 379, 670
BspANI GGCC 2 cut(s) 74, 680
BspCNI CTCAG 1 cut(s) 542
BspFNI CGCG 1 cut(s) 672
BspLI GGNNCC 4 cut(s) 174, 651, 668, 822
BspTI CTTAAG 1 cut(s) 94
BsrI ACTGG 1 cut(s) 564
BssMI GATC 1 cut(s) 277
Bst2UI CCWGG 2 cut(s) 71, 766
Bst4CI ACNGT 2 cut(s) 331, 363
BstAFI CTTAAG 1 cut(s) 94
BstBAI YACGTR 1 cut(s) 229
BstC8I GCNNGC 3 cut(s) 39, 126, 732
BstDEI CTNAG 2 cut(s) 445, 529
BstEII GGTNACC 1 cut(s) 482
BstENI CCTNNNNNAGG 2 cut(s) 205, 504
BstF5I GGATG 4 cut(s) 196, 390, 774, 806
BstFNI CGCG 1 cut(s) 672
BstH2I RGCGCY 1 cut(s) 385
BstHHI GCGC 4 cut(s) 37, 214, 384, 674
BstKTI GATC 1 cut(s) 280
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 1 cut(s) 277
BstMWI GCNNNNNNNGC 2 cut(s) 38, 647
BstNI CCWGG 2 cut(s) 71, 766
BstPI GGTNACC 1 cut(s) 482
BstSCI CCNGG 2 cut(s) 69, 764
BstSFI CTRYAG 1 cut(s) 359
BstUI CGCG 1 cut(s) 672
BstV1I GCAGC 3 cut(s) 19, 108, 246
BsuI GTATCC 1 cut(s) 527
BsuRI GGCC 2 cut(s) 74, 680
BtrI CACGTC 1 cut(s) 85
BtsCI GGATG 4 cut(s) 196, 390, 774, 806
BtsIMutI CAGTG 2 cut(s) 45, 336
Cac8I GCNNGC 3 cut(s) 39, 126, 732
CaiI CAGNNNCTG 2 cut(s) 512, 736
CfoI GCGC 4 cut(s) 37, 214, 384, 674
Csp6I GTAC 2 cut(s) 226, 778
CspCI CAANNNNNGTGG 2 cut(s) 531, 566
CviAII CATG 2 cut(s) 353, 755
CviQI GTAC 2 cut(s) 226, 778
DdeI CTNAG 2 cut(s) 445, 529
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
DraIII CACNNNGTG 1 cut(s) 268
DrdI GACNNNNNNGTC 1 cut(s) 89
DseDI GACNNNNNNGTC 1 cut(s) 89
Eco147I AGGCCT 1 cut(s) 74
Eco24I GRGCYC 1 cut(s) 524
Eco91I GGTNACC 1 cut(s) 482
EcoNI CCTNNNNNAGG 2 cut(s) 205, 504
EcoO65I GGTNACC 1 cut(s) 482
EcoRII CCWGG 2 cut(s) 69, 764
EcoT38I GRGCYC 1 cut(s) 524
Esp3I CGTCTC 1 cut(s) 75
FaeI CATG 2 cut(s) 356, 758
FalI AAGNNNNNCTT 4 cut(s) 395, 427, 696, 728
FaqI GGGAC 2 cut(s) 129, 198
FatI CATG 2 cut(s) 352, 754
Fnu4HI GCNGC 5 cut(s) 30, 33, 122, 260, 380
FokI GGATG 4 cut(s) 183, 377, 781, 793
FriOI GRGCYC 1 cut(s) 524
Fsp4HI GCNGC 5 cut(s) 30, 33, 122, 260, 380
FspBI CTAG 2 cut(s) 827, 841
GlaI GCGC 4 cut(s) 36, 213, 383, 673
GluI GCNGC 5 cut(s) 30, 33, 122, 260, 380
GsaI CCCAGC 3 cut(s) 338, 350, 516
HaeII RGCGCY 1 cut(s) 385
HaeIII GGCC 2 cut(s) 74, 680
HapII CCGG 3 cut(s) 176, 273, 677
HhaI GCGC 4 cut(s) 37, 214, 384, 674
Hin1II CATG 2 cut(s) 356, 758
Hin6I GCGC 4 cut(s) 35, 212, 382, 672
HinP1I GCGC 4 cut(s) 35, 212, 382, 672
HincII GTYRAC 2 cut(s) 433, 543
HindII GTYRAC 2 cut(s) 433, 543
HpaII CCGG 3 cut(s) 176, 273, 677
HphI GGTGA 2 cut(s) 287, 784
Hpy166II GTNNAC 2 cut(s) 433, 543
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 4 cut(s) 307, 531, 569, 713
Hpy8I GTNNAC 2 cut(s) 433, 543
HpyAV CCTTC 3 cut(s) 85, 244, 612
HpyCH4III ACNGT 2 cut(s) 331, 363
HpyCH4IV ACGT 4 cut(s) 84, 228, 235, 776
HpyCH4V TGCA 5 cut(s) 262, 424, 454, 641, 730
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 647
HpyF3I CTNAG 2 cut(s) 445, 529
HpySE526I ACGT 4 cut(s) 84, 228, 235, 776
Hsp92II CATG 2 cut(s) 356, 758
HspAI GCGC 4 cut(s) 35, 212, 382, 672
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 4 cut(s) 178, 655, 679, 826
Lsp1109I GCAGC 3 cut(s) 19, 108, 246
LweI GCATC 3 cut(s) 333, 639, 718
MaeI CTAG 2 cut(s) 827, 841
MaeII ACGT 4 cut(s) 84, 228, 235, 776
MaeIII GTNAC 2 cut(s) 482, 772
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MhlI GDGCHC 1 cut(s) 524
MluCI AATT 2 cut(s) 687, 836
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 8 cut(s) 4, 201, 211, 211, 510, 663, 793, 820
MseI TTAA 2 cut(s) 95, 623
MslI CAYNNNNRTG 1 cut(s) 714
MspCI CTTAAG 1 cut(s) 94
MspI CCGG 3 cut(s) 176, 273, 677
MspR9I CCNGG 2 cut(s) 71, 766
MvaI CCWGG 2 cut(s) 71, 766
MvnI CGCG 1 cut(s) 672
MwoI GCNNNNNNNGC 2 cut(s) 38, 647
NdeII GATC 1 cut(s) 277
NlaIII CATG 2 cut(s) 356, 758
NlaIV GGNNCC 4 cut(s) 174, 651, 668, 822
NmuCI GTSAC 1 cut(s) 772
PceI AGGCCT 1 cut(s) 74
PkrI GCNGC 5 cut(s) 31, 34, 123, 261, 381
Ppu21I YACGTR 1 cut(s) 229
Psp6I CCWGG 2 cut(s) 69, 764
PspEI GGTNACC 1 cut(s) 482
PspFI CCCAGC 3 cut(s) 334, 346, 512
PspGI CCWGG 2 cut(s) 69, 764
PspN4I GGNNCC 4 cut(s) 174, 651, 668, 822
PstNI CAGNNNCTG 2 cut(s) 512, 736
RsaI GTAC 2 cut(s) 227, 779
RsaNI GTAC 2 cut(s) 226, 778
RseI CAYNNNNRTG 1 cut(s) 714
SaqAI TTAA 2 cut(s) 95, 623
SatI GCNGC 5 cut(s) 30, 33, 122, 260, 380
Sau3AI GATC 1 cut(s) 277
ScrFI CCNGG 2 cut(s) 71, 766
SduI GDGCHC 1 cut(s) 524
SfaNI GCATC 3 cut(s) 333, 639, 718
SfcI CTRYAG 1 cut(s) 359
SmiMI CAYNNNNRTG 1 cut(s) 714
SmlI CTYRAG 2 cut(s) 94, 567
SmoI CTYRAG 2 cut(s) 94, 567
Sse9I AATT 2 cut(s) 687, 836
SseBI AGGCCT 1 cut(s) 74
SsiI CCGC 3 cut(s) 29, 379, 670
SspMI CTAG 2 cut(s) 827, 841
StuI AGGCCT 1 cut(s) 74
StyD4I CCNGG 2 cut(s) 69, 764
TaaI ACNGT 2 cut(s) 331, 363
TaiI ACGT 4 cut(s) 87, 231, 238, 779
TaqI TCGA 1 cut(s) 203
TasI AATT 2 cut(s) 687, 836
TauI GCSGC 2 cut(s) 32, 382
Tru1I TTAA 2 cut(s) 95, 623
Tru9I TTAA 2 cut(s) 95, 623
TscAI CASTG 2 cut(s) 52, 336
TseFI GTSAC 1 cut(s) 772
TseI GCWGC 3 cut(s) 32, 121, 259
Tsp45I GTSAC 1 cut(s) 772
TspDTI ATGAA 3 cut(s) 54, 459, 795
TspGWI ACGGA 1 cut(s) 178
TspRI CASTG 2 cut(s) 52, 336
Vha464I CTTAAG 1 cut(s) 94
XagI CCTNNNNNAGG 2 cut(s) 205, 504
XapI RAATTY 1 cut(s) 836
XspI CTAG 2 cut(s) 827, 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.