FvH4_6g31171

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000109
Physical Location & Seq
Forward (+)
24349029 .. 24349980
952 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31171.t1

Sequence Viewer

Length: 870 bp
ATGAAGGTAATCCATAGTATTTTAGATCCAATTCACGAGACGCTTCCTCATATTATCTATGAATTTGGTTCCGATAAGGTTACTGCTCTCCTCTCTTTCAACTATGAGAGGACAATAGGGTTTTGTCATGTGTGTGGACTTTTGGAACATGCTGCTACAGGCTACGGTGGTCCACCAGACTTGTTGCAGGTTCAAGTTCTAAGAGACAGTCCTCAAGCGCAAAATGGTGGTGGTTTCTCATTTGGTTTTGGGTCTGGTGCAACTTCTGGTGCGTTTCAGATGGGCAATGATCTTCTCCCCCTTGGAGTTGACAAAGGCAAGGGGCTTGTTGTGGATTACACTAATTTGTTCAAACCTGTGTTGCCAACTTTAGGGTTCTCATTCTCCATTCGAGGGATCTCAGCTTCAGAACTTGCTTTGAACATTGAAATTTTTTGGTCTCCATTACCACTTGCAACGCCTGCATCGATTTCGGTGCCAATTATTCAAGAGATCACAGCTCCTGCTTTGCTCTCTAGGGTGAAACGAGATGCAGTGTTGGCTTTGGGTGGTTTGGGGAAGTGGGTTAGGTCTGAGACTGCTCTTGTGGGGTATGTGGTACCTTTCGAGCTCCCATTTGTGGCTGAGCTTGCTCTGCCTCATGAGGACGGCAAAATTAGGGTGTCGCCGGCAAATAAACGTAAAGTTGACAGGCTAGTCGGATCTAAGAACCATCTGAAACTTGAAGATATGAAACTATGGACGCTTGGTGTGACCACCAGACCAAAGAAACACGAAAAGAGGAGTTTTGGGATGAAGAAAGGTACTGTGTTTTTTGCTGATTCTAGCCCAATTGTTCTTTCGGGTTCTAGGAGTGCGGAGGCGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

290

Amino Acids

31.17

Weight (kDa)

8.98

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 695
Acc36I ACCTGC 1 cut(s) 178
Acc65I GGTACC 1 cut(s) 598
AccB1I GGYRCC 2 cut(s) 475, 598
AciI CCGC 1 cut(s) 857
AclWI GGATC 3 cut(s) 20, 404, 709
AcsI RAATTY 2 cut(s) 62, 429
AcuI CTGAAG 1 cut(s) 390
AfaI GTAC 2 cut(s) 600, 805
AfiI CCNNNNNNNGG 3 cut(s) 371, 393, 619
AgsI TTSAA 7 cut(s) 100, 194, 352, 421, 428, 488, 725
AjuI GAANNNNNNNTTGG 2 cut(s) 823, 855
AluBI AGCT 4 cut(s) 404, 500, 610, 628
AluI AGCT 4 cut(s) 404, 500, 610, 628
Alw21I GWGCWC 1 cut(s) 612
Alw26I GTCTC 4 cut(s) 32, 198, 444, 569
AlwI GGATC 3 cut(s) 20, 404, 709
AlwNI CAGNNNCTG 1 cut(s) 503
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 2 cut(s) 62, 429
Asp718I GGTACC 1 cut(s) 598
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 532
AvaII GGWCC 1 cut(s) 170
BanI GGYRCC 2 cut(s) 475, 598
BanII GRGCYC 1 cut(s) 612
BauI CACGAG 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 612
BbvI GCAGC 1 cut(s) 139
BccI CCATC 2 cut(s) 274, 720
BceAI ACGGC 1 cut(s) 664
BcgI CGANNNNNNTGC 4 cut(s) 453, 457, 487, 491
BcoDI GTCTC 4 cut(s) 32, 198, 444, 569
BfaI CTAG 4 cut(s) 516, 695, 825, 849
BfmI CTRYAG 1 cut(s) 156
BfuAI ACCTGC 1 cut(s) 178
BisI GCNGC 1 cut(s) 153
BlpI GCTNAGC 1 cut(s) 624
BlsI GCNGC 1 cut(s) 154
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 3 cut(s) 70, 477, 600
BmsI GCATC 2 cut(s) 473, 520
Bpu1102I GCTNAGC 1 cut(s) 624
BpuEI CTTGAG 1 cut(s) 198
Bsa29I ATCGAT 1 cut(s) 467
BsaI GGTCTC 1 cut(s) 444
BsaJI CCNNGG 1 cut(s) 301
BsaXI ACNNNNNCTCC 1 cut(s) 851
Bsc4I CCNNNNNNNGG 3 cut(s) 371, 393, 619
Bse118I RCCGGY 1 cut(s) 667
Bse3DI GCAATG 1 cut(s) 292
BseCI ATCGAT 1 cut(s) 467
BseDI CCNNGG 1 cut(s) 301
BseGI GGATG 1 cut(s) 798
BseLI CCNNNNNNNGG 3 cut(s) 371, 393, 619
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 3 cut(s) 414, 564, 615
BseRI GAGGAG 2 cut(s) 80, 796
BseXI GCAGC 1 cut(s) 139
BshNI GGYRCC 2 cut(s) 475, 598
BshVI ATCGAT 1 cut(s) 467
BsiHKAI GWGCWC 1 cut(s) 612
BsiSI CCGG 1 cut(s) 668
BslI CCNNNNNNNGG 3 cut(s) 371, 393, 619
BsmAI GTCTC 4 cut(s) 32, 198, 444, 569
BsmBI CGTCTC 1 cut(s) 32
Bso31I GGTCTC 1 cut(s) 444
Bsp1286I GDGCHC 1 cut(s) 612
Bsp143I GATC 5 cut(s) 25, 289, 396, 492, 701
Bsp1720I GCTNAGC 1 cut(s) 624
BspACI CCGC 1 cut(s) 857
BspCNI CTCAG 3 cut(s) 413, 565, 616
BspDI ATCGAT 1 cut(s) 467
BspHI TCATGA 1 cut(s) 640
BspLI GGNNCC 3 cut(s) 70, 477, 600
BspMI ACCTGC 1 cut(s) 178
BspPI GGATC 3 cut(s) 20, 404, 709
BspT107I GGYRCC 2 cut(s) 475, 598
BspTNI GGTCTC 1 cut(s) 444
BsrDI GCAATG 1 cut(s) 292
BsrFI RCCGGY 1 cut(s) 667
BssAI RCCGGY 1 cut(s) 667
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 5 cut(s) 25, 289, 396, 492, 701
BssSI CACGAG 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 301
Bst2BI CACGAG 1 cut(s) 35
Bst4CI ACNGT 3 cut(s) 167, 209, 808
BstAPI GCANNNNNTGC 1 cut(s) 461
BstC8I GCNNGC 3 cut(s) 462, 630, 669
BstDEI CTNAG 5 cut(s) 200, 400, 573, 624, 705
BstF5I GGATG 1 cut(s) 798
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 5 cut(s) 28, 292, 399, 495, 704
BstMAI GTCTC 4 cut(s) 32, 198, 444, 569
BstMBI GATC 5 cut(s) 25, 289, 396, 492, 701
BstMWI GCNNNNNNNGC 4 cut(s) 461, 539, 629, 634
BstNSI RCATGY 1 cut(s) 152
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 139
BstX2I RGATCY 3 cut(s) 25, 396, 701
BstYI RGATCY 3 cut(s) 25, 396, 701
Bsu15I ATCGAT 1 cut(s) 467
BsuTUI ATCGAT 1 cut(s) 467
BtsCI GGATG 1 cut(s) 798
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 1 cut(s) 540
BveI ACCTGC 1 cut(s) 178
Cac8I GCNNGC 3 cut(s) 462, 630, 669
CaiI CAGNNNCTG 1 cut(s) 503
CciI TCATGA 1 cut(s) 640
CfoI GCGC 1 cut(s) 220
Cfr10I RCCGGY 1 cut(s) 667
Cfr13I GGNCC 1 cut(s) 170
ClaI ATCGAT 1 cut(s) 467
CseI GACGC 2 cut(s) 49, 751
Csp6I GTAC 2 cut(s) 599, 804
CspCI CAANNNNNGTGG 2 cut(s) 162, 197
CviAII CATG 3 cut(s) 128, 149, 641
CviQI GTAC 2 cut(s) 599, 804
DdeI CTNAG 5 cut(s) 200, 400, 573, 624, 705
DpnI GATC 5 cut(s) 27, 291, 398, 494, 703
DpnII GATC 5 cut(s) 25, 289, 396, 492, 701
DrdI GACNNNNNNGTC 1 cut(s) 695
DseDI GACNNNNNNGTC 1 cut(s) 695
Ecl136II GAGCTC 1 cut(s) 610
Eco130I CCWWGG 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 612
Eco31I GGTCTC 1 cut(s) 444
Eco47I GGWCC 1 cut(s) 170
Eco53kI GAGCTC 1 cut(s) 610
Eco57I CTGAAG 1 cut(s) 390
EcoICRI GAGCTC 1 cut(s) 610
EcoT14I CCWWGG 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 301
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 3 cut(s) 131, 152, 644
FatI CATG 3 cut(s) 127, 148, 640
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 805
FriOI GRGCYC 1 cut(s) 612
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 4 cut(s) 516, 695, 825, 849
GlaI GCGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 153
HapII CCGG 1 cut(s) 668
HgaI GACGC 2 cut(s) 49, 751
HhaI GCGC 1 cut(s) 220
Hin1II CATG 3 cut(s) 131, 152, 644
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HincII GTYRAC 2 cut(s) 310, 688
HindII GTYRAC 2 cut(s) 310, 688
HinfI GANTC 1 cut(s) 821
HpaII CCGG 1 cut(s) 668
HphI GGTGA 1 cut(s) 532
Hpy166II GTNNAC 4 cut(s) 137, 173, 310, 688
Hpy188I TCNGA 6 cut(s) 73, 279, 409, 574, 701, 717
Hpy188III TCNNGA 3 cut(s) 35, 488, 641
Hpy8I GTNNAC 4 cut(s) 137, 173, 310, 688
HpyCH4III ACNGT 3 cut(s) 167, 209, 808
HpyCH4IV ACGT 1 cut(s) 679
HpyCH4V TGCA 5 cut(s) 187, 260, 455, 464, 533
HpyF10VI GCNNNNNNNGC 4 cut(s) 461, 539, 629, 634
HpyF3I CTNAG 5 cut(s) 200, 400, 573, 624, 705
HpySE526I ACGT 1 cut(s) 679
Hsp92II CATG 3 cut(s) 131, 152, 644
HspAI GCGC 1 cut(s) 218
KpnI GGTACC 1 cut(s) 602
KroI GCCGGC 1 cut(s) 667
KroNI GCCGGC 1 cut(s) 669
Kzo9I GATC 5 cut(s) 25, 289, 396, 492, 701
LmnI GCTCC 2 cut(s) 505, 615
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 2 cut(s) 473, 520
MaeI CTAG 4 cut(s) 516, 695, 825, 849
MaeII ACGT 1 cut(s) 679
MaeIII GTNAC 2 cut(s) 79, 751
MalI GATC 5 cut(s) 27, 291, 398, 494, 703
MboI GATC 5 cut(s) 25, 289, 396, 492, 701
MboII GAAGA 3 cut(s) 284, 737, 808
MfeI CAATTG 1 cut(s) 831
MflI RGATCY 3 cut(s) 25, 396, 701
MhlI GDGCHC 1 cut(s) 612
MluCI AATT 7 cut(s) 30, 62, 343, 429, 480, 654, 831
MmeI TCCRAC 1 cut(s) 679
MnlI CCTC 9 cut(s) 57, 101, 102, 222, 386, 637, 648, 774, 853
MroNI GCCGGC 1 cut(s) 667
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 1 cut(s) 668
MunI CAATTG 1 cut(s) 831
MwoI GCNNNNNNNGC 4 cut(s) 461, 539, 629, 634
NaeI GCCGGC 1 cut(s) 669
NdeII GATC 5 cut(s) 25, 289, 396, 492, 701
NgoMIV GCCGGC 1 cut(s) 667
NlaIII CATG 3 cut(s) 131, 152, 644
NlaIV GGNNCC 3 cut(s) 70, 477, 600
NmuCI GTSAC 1 cut(s) 751
NspI RCATGY 1 cut(s) 152
PagI TCATGA 1 cut(s) 640
PcsI WCGNNNNNNNCGW 1 cut(s) 464
PdiI GCCGGC 1 cut(s) 669
PfeI GAWTC 1 cut(s) 821
PkrI GCNGC 1 cut(s) 154
Psp124BI GAGCTC 1 cut(s) 612
PspN4I GGNNCC 3 cut(s) 70, 477, 600
PspPI GGNCC 1 cut(s) 170
PstNI CAGNNNCTG 1 cut(s) 503
PsuI RGATCY 3 cut(s) 25, 396, 701
RsaI GTAC 2 cut(s) 600, 805
RsaNI GTAC 2 cut(s) 599, 804
RseI CAYNNNNRTG 1 cut(s) 132
SacI GAGCTC 1 cut(s) 612
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 5 cut(s) 25, 289, 396, 492, 701
Sau96I GGNCC 1 cut(s) 170
SduI GDGCHC 1 cut(s) 612
SfaNI GCATC 2 cut(s) 473, 520
SfcI CTRYAG 1 cut(s) 156
SinI GGWCC 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 213
SmoI CTYRAG 1 cut(s) 213
Sse9I AATT 7 cut(s) 30, 62, 343, 429, 480, 654, 831
SsiI CCGC 1 cut(s) 857
SspMI CTAG 4 cut(s) 516, 695, 825, 849
SstI GAGCTC 1 cut(s) 612
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 3 cut(s) 167, 209, 808
TaiI ACGT 1 cut(s) 682
TaqI TCGA 3 cut(s) 391, 467, 606
TasI AATT 7 cut(s) 30, 62, 343, 429, 480, 654, 831
TfiI GAWTC 1 cut(s) 821
TscAI CASTG 1 cut(s) 540
TseFI GTSAC 1 cut(s) 751
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 751
TspDTI ATGAA 4 cut(s) 17, 75, 746, 809
TspRI CASTG 1 cut(s) 540
VpaK11BI GGWCC 1 cut(s) 170
XapI RAATTY 2 cut(s) 62, 429
XceI RCATGY 1 cut(s) 152
XspI CTAG 4 cut(s) 516, 695, 825, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.