FvH4_4g06570

Rho (Ras homology) subfamily of Ras-like small GTPases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000109
Physical Location & Seq
Reverse (-)
5829015 .. 5829767
753 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06570.t1

Sequence Viewer

Length: 594 bp
ATGAAGGCCCTATTTGGCCATGGGGGTGCGACTAGGGTTTCTGCAAATCCTAACCCTAAATCTGTTCCAAGCTTGTTTGGGAAGCAATCCAACTTGTTAGGAGGCGGGTCCTCTTCTGGTGTTAAGGCTTCAGGGTTGCAGAGCTTTTCCTCTCCTCTTGCTATTCCATTTGCAGGTACAATCTCTGGTGGAAGTGACTCTGAGTTCCCAAAGGTATCCTTCTCTTTGCTAGGGATCATGGCTGCCAATCTGGCGGTCCAGGTTGCTCAATTTCGGACTCCTCCTGCTGCTGATTTGGGGTTTGTTGCGTTGGTCCTGTATGAGCTTACTTTTGCGTCGAAAATGGCTTTGGCTCATTCTAGTGGGATTATCACAGAGTCACCGGCCAAGAAGAGGAAGGTGGGGAGACCACGTGGTTCTAAGAACAAGAGAGTGGTGGTTGAGAAGGATTCTAAGAAAGCTGGGAATGATGTTGAGGGGTCAGTCTCAGAGGCTAGTCCGAAGACCAATGTGCTAGTGTCTGAGGATTATGTGCTTGAGGAGATATCTCCTTCTATTGTTGATGTTTCTCCCAGGGAGACTCCCTTTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632 Ras

Protein Analysis

198

Amino Acids

20.41

Weight (kDa)

9.62

Isoelectric Point (pI)

52.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 164
AciI CCGC 2 cut(s) 105, 254
AclWI GGATC 1 cut(s) 242
AcoI YGGCCR 2 cut(s) 16, 384
AcuI CTGAAG 1 cut(s) 114
AcvI CACGTG 1 cut(s) 413
AfaI GTAC 1 cut(s) 178
AfiI CCNNNNNNNGG 2 cut(s) 173, 393
AjnI CCWGG 2 cut(s) 258, 572
AjuI GAANNNNNNNTTGG 2 cut(s) 332, 364
AluBI AGCT 4 cut(s) 72, 144, 325, 461
AluI AGCT 4 cut(s) 72, 144, 325, 461
Alw26I GTCTC 3 cut(s) 400, 490, 572
AlwI GGATC 1 cut(s) 242
AoxI GGCC 3 cut(s) 6, 16, 384
ApeKI GCWGC 2 cut(s) 242, 287
AspS9I GGNCC 4 cut(s) 7, 108, 256, 313
AsuHPI GGTGA 1 cut(s) 372
AvaII GGWCC 3 cut(s) 108, 256, 313
BalI TGGCCA 1 cut(s) 18
BbrPI CACGTG 1 cut(s) 413
BbsI GAAGAC 1 cut(s) 509
BbvI GCAGC 2 cut(s) 229, 274
BciT130I CCWGG 2 cut(s) 260, 574
BciVI GTATCC 1 cut(s) 226
BcoDI GTCTC 3 cut(s) 400, 490, 572
BfaI CTAG 5 cut(s) 33, 230, 360, 495, 515
BfuAI ACCTGC 1 cut(s) 164
BfuI GTATCC 1 cut(s) 226
BglI GCCNNNNNGGC 1 cut(s) 251
BisI GCNGC 2 cut(s) 243, 288
BlsI GCNGC 2 cut(s) 244, 289
Bme1390I CCNGG 2 cut(s) 260, 574
Bme18I GGWCC 3 cut(s) 108, 256, 313
BmgT120I GGNCC 4 cut(s) 7, 108, 256, 313
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 2 cut(s) 260, 574
BpiI GAAGAC 1 cut(s) 509
BpuEI CTTGAG 1 cut(s) 557
BsaAI YACGTR 1 cut(s) 413
BsaI GGTCTC 1 cut(s) 400
BsaJI CCNNGG 3 cut(s) 19, 572, 573
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 393
Bse118I RCCGGY 1 cut(s) 382
BseBI CCWGG 2 cut(s) 260, 574
BseDI CCNNGG 3 cut(s) 19, 572, 573
BseLI CCNNNNNNNGG 2 cut(s) 173, 393
BseMII CTCAG 3 cut(s) 192, 501, 513
BseRI GAGGAG 3 cut(s) 144, 270, 554
BseXI GCAGC 2 cut(s) 229, 274
BseYI CCCAGC 1 cut(s) 461
BshFI GGCC 3 cut(s) 8, 18, 386
BsiSI CCGG 1 cut(s) 383
BslI CCNNNNNNNGG 2 cut(s) 173, 393
BsmAI GTCTC 3 cut(s) 400, 490, 572
BsnI GGCC 3 cut(s) 8, 18, 386
Bso31I GGTCTC 1 cut(s) 400
Bsp143I GATC 1 cut(s) 234
Bsp19I CCATGG 1 cut(s) 19
BspACI CCGC 2 cut(s) 105, 254
BspANI GGCC 3 cut(s) 8, 18, 386
BspCNI CTCAG 3 cut(s) 193, 500, 514
BspLI GGNNCC 1 cut(s) 109
BspMI ACCTGC 1 cut(s) 164
BspPI GGATC 1 cut(s) 242
BspTNI GGTCTC 1 cut(s) 400
BsrFI RCCGGY 1 cut(s) 382
BssAI RCCGGY 1 cut(s) 382
BssECI CCNNGG 3 cut(s) 19, 572, 573
BssMI GATC 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 19
Bst2UI CCWGG 2 cut(s) 260, 574
Bst6I CTCTTC 2 cut(s) 118, 386
BstBAI YACGTR 1 cut(s) 413
BstDEI CTNAG 5 cut(s) 201, 420, 453, 487, 522
BstDSI CCRYGG 1 cut(s) 19
BstKTI GATC 1 cut(s) 237
BstMAI GTCTC 3 cut(s) 400, 490, 572
BstMBI GATC 1 cut(s) 234
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 2 cut(s) 260, 574
BstSCI CCNGG 2 cut(s) 258, 572
BstV1I GCAGC 2 cut(s) 229, 274
BstV2I GAAGAC 1 cut(s) 509
BsuI GTATCC 1 cut(s) 226
BsuRI GGCC 3 cut(s) 8, 18, 386
BtgI CCRYGG 1 cut(s) 19
BveI ACCTGC 1 cut(s) 164
Cfr10I RCCGGY 1 cut(s) 382
Cfr13I GGNCC 4 cut(s) 7, 108, 256, 313
CseI GACGC 1 cut(s) 324
Csp6I GTAC 1 cut(s) 177
CviAII CATG 2 cut(s) 20, 238
CviQI GTAC 1 cut(s) 177
DdeI CTNAG 5 cut(s) 201, 420, 453, 487, 522
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
EaeI YGGCCR 2 cut(s) 16, 384
Eam1104I CTCTTC 2 cut(s) 118, 386
EarI CTCTTC 2 cut(s) 118, 386
Eco130I CCWWGG 1 cut(s) 19
Eco31I GGTCTC 1 cut(s) 400
Eco32I GATATC 1 cut(s) 546
Eco47I GGWCC 3 cut(s) 108, 256, 313
Eco57I CTGAAG 1 cut(s) 114
Eco72I CACGTG 1 cut(s) 413
EcoO109I RGGNCCY 2 cut(s) 7, 108
EcoRII CCWGG 2 cut(s) 258, 572
EcoRV GATATC 1 cut(s) 546
EcoT14I CCWWGG 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 19
FaeI CATG 2 cut(s) 23, 241
FaiI YATR 4 cut(s) 21, 239, 321, 531
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FatI CATG 2 cut(s) 19, 237
FauI CCCGC 1 cut(s) 98
Fnu4HI GCNGC 2 cut(s) 243, 288
Fsp4HI GCNGC 2 cut(s) 243, 288
FspBI CTAG 5 cut(s) 33, 230, 360, 495, 515
GluI GCNGC 2 cut(s) 243, 288
GsaI CCCAGC 1 cut(s) 465
HaeIII GGCC 3 cut(s) 8, 18, 386
HapII CCGG 1 cut(s) 383
HgaI GACGC 1 cut(s) 324
Hin1II CATG 2 cut(s) 23, 241
HindIII AAGCTT 1 cut(s) 70
HinfI GANTC 5 cut(s) 197, 277, 377, 449, 580
HpaII CCGG 1 cut(s) 383
HphI GGTGA 1 cut(s) 372
Hpy188I TCNGA 5 cut(s) 202, 276, 490, 501, 523
Hpy99I CGWCG 1 cut(s) 340
HpyAV CCTTC 4 cut(s) 229, 391, 439, 561
HpyCH4IV ACGT 1 cut(s) 412
HpyCH4V TGCA 3 cut(s) 44, 139, 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 5 cut(s) 201, 420, 453, 487, 522
HpySE526I ACGT 1 cut(s) 412
Hsp92II CATG 2 cut(s) 23, 241
Kzo9I GATC 1 cut(s) 234
Lsp1109I GCAGC 2 cut(s) 229, 274
MaeI CTAG 5 cut(s) 33, 230, 360, 495, 515
MaeII ACGT 1 cut(s) 412
MaeIII GTNAC 2 cut(s) 194, 378
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 3 cut(s) 105, 403, 514
MlsI TGGCCA 1 cut(s) 18
MluCI AATT 1 cut(s) 269
MluNI TGGCCA 1 cut(s) 18
MlyI GAGTC 4 cut(s) 191, 271, 386, 574
MmeI TCCRAC 1 cut(s) 114
Mox20I TGGCCA 1 cut(s) 18
MscI TGGCCA 1 cut(s) 18
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 2 cut(s) 24, 360
Msp20I TGGCCA 1 cut(s) 18
MspI CCGG 1 cut(s) 383
MspR9I CCNGG 2 cut(s) 260, 574
MvaI CCWGG 2 cut(s) 260, 574
MwoI GCNNNNNNNGC 1 cut(s) 251
NcoI CCATGG 1 cut(s) 19
NdeII GATC 1 cut(s) 234
NlaIII CATG 2 cut(s) 23, 241
NlaIV GGNNCC 1 cut(s) 109
NmuCI GTSAC 2 cut(s) 194, 378
PasI CCCWGGG 1 cut(s) 573
PfeI GAWTC 1 cut(s) 449
PkrI GCNGC 2 cut(s) 244, 289
PleI GAGTC 4 cut(s) 191, 271, 385, 574
PmaCI CACGTG 1 cut(s) 413
PmlI CACGTG 1 cut(s) 413
PpsI GAGTC 4 cut(s) 191, 271, 385, 574
Ppu21I YACGTR 1 cut(s) 413
PpuMI RGGWCCY 1 cut(s) 108
Psp5II RGGWCCY 1 cut(s) 108
Psp6I CCWGG 2 cut(s) 258, 572
PspCI CACGTG 1 cut(s) 413
PspFI CCCAGC 1 cut(s) 461
PspGI CCWGG 2 cut(s) 258, 572
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 4 cut(s) 7, 108, 256, 313
PspPPI RGGWCCY 1 cut(s) 108
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
RseI CAYNNNNRTG 2 cut(s) 24, 360
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 2 cut(s) 243, 288
Sau3AI GATC 1 cut(s) 234
Sau96I GGNCC 4 cut(s) 7, 108, 256, 313
SchI GAGTC 4 cut(s) 191, 271, 386, 574
ScrFI CCNGG 2 cut(s) 260, 574
SetI ASST 9 cut(s) 74, 146, 178, 216, 264, 327, 402, 415, 463
SinI GGWCC 3 cut(s) 108, 256, 313
SmiMI CAYNNNNRTG 2 cut(s) 24, 360
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 1 cut(s) 269
SsiI CCGC 2 cut(s) 105, 254
SspMI CTAG 5 cut(s) 33, 230, 360, 495, 515
StyD4I CCNGG 2 cut(s) 258, 572
StyI CCWWGG 1 cut(s) 19
TaiI ACGT 1 cut(s) 415
TaqI TCGA 1 cut(s) 338
TasI AATT 1 cut(s) 269
TfiI GAWTC 1 cut(s) 449
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TseFI GTSAC 2 cut(s) 194, 378
TseI GCWGC 2 cut(s) 242, 287
Tsp45I GTSAC 2 cut(s) 194, 378
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 3 cut(s) 108, 256, 313
XspI CTAG 5 cut(s) 33, 230, 360, 495, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.