RLG00000015588

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000109
Physical Location & Seq
Reverse (-)
68268032 .. 68268863
832 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015588

Sequence Viewer

Length: 627 bp
ATGGTAGACGAGGTCTCTGCCAAGCTTACGGCTGCCTTTGCCATCTCCAAGAAGGGGAAGGTGACTTTTGGTGACGGCGCCGCTCTCTCCAATCACCACTATGCAATTGGACGTCGTCTCTCTGCCAAAGGTAAAGTGGACGCTAAAGCTCTCATGGGGACCCTATCTTCGGTGTGGAATCTAAAAAACAGGATGTCTGTTAGAGATCAAGGGGATCGTTTCGTCCTCAAATTCATGGTGGAGGGTGAGCGAGATCATGTGTCAACAACGGGCCTTGATTTTACGGTAGAGGTGCTAGGCCTTCCTCTGGCTCTCATGACAAACAAGGCGTCACTCATGGTAAGGGGTACGCTTGGGGAGGTTCTGTTTCTGGACAAGGTTGGGATCTGGCGAGGCACCAAGGAGCAAAGCTGTGGTTTGCTTGAGCACTTTGAGAATGGTTGCAGTGGGCCGCCGTTCCAAAAGACGGTTGATTCAATGCTTGAGAACGTGGTTGCTGGAAACTCTAGATCTGCTAGGGTTTCAAGTGGTGTGGTGACTGGGCTGCCCAATTCTGGCCTGATTGGGACATTGCTACTCTCTGGTGGTGGTGGTGATGGAGGAAATCAGTGGCATGGGCCAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

21.96

Weight (kDa)

9.17

Isoelectric Point (pI)

21.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 115
AccB1I GGYRCC 2 cut(s) 77, 395
AccBSI CCGCTC 1 cut(s) 83
AccI GTMKAC 1 cut(s) 6
AciI CCGC 2 cut(s) 81, 452
AclWI GGATC 2 cut(s) 222, 392
AcsI RAATTY 1 cut(s) 230
AcyI GRCGYC 3 cut(s) 78, 112, 329
AfaI GTAC 1 cut(s) 349
AfiI CCNNNNNNNGG 5 cut(s) 54, 169, 307, 466, 554
AgsI TTSAA 2 cut(s) 477, 525
AluBI AGCT 4 cut(s) 25, 149, 411, 624
AluI AGCT 4 cut(s) 25, 149, 411, 624
Alw21I GWGCWC 1 cut(s) 429
Alw26I GTCTC 2 cut(s) 19, 122
AlwI GGATC 2 cut(s) 222, 392
AoxI GGCC 5 cut(s) 271, 298, 449, 556, 617
ApeKI GCWGC 2 cut(s) 32, 544
ApoI RAATTY 1 cut(s) 230
ArsI GACNNNNNNTTYG 4 cut(s) 151, 183, 314, 346
AspLEI GCGC 1 cut(s) 80
AspS9I GGNCC 4 cut(s) 159, 271, 449, 617
AsuHPI GGTGA 6 cut(s) 73, 83, 86, 257, 547, 605
AvaII GGWCC 1 cut(s) 159
BanI GGYRCC 2 cut(s) 77, 395
Bbv12I GWGCWC 1 cut(s) 429
BbvI GCAGC 2 cut(s) 19, 531
BccI CCATC 2 cut(s) 50, 590
BceAI ACGGC 3 cut(s) 45, 91, 439
BcgI CGANNNNNNTGC 1 cut(s) 33
BcoDI GTCTC 2 cut(s) 19, 122
BfaI CTAG 3 cut(s) 296, 507, 516
BfoI RGCGCY 1 cut(s) 81
BglII AGATCT 1 cut(s) 509
BisI GCNGC 4 cut(s) 33, 81, 452, 545
BlsI GCNGC 4 cut(s) 34, 82, 453, 546
Bme18I GGWCC 1 cut(s) 159
BmgT120I GGNCC 4 cut(s) 159, 271, 449, 617
BmiI GGNNCC 4 cut(s) 79, 160, 161, 397
BmrI ACTGGG 1 cut(s) 549
BmuI ACTGGG 1 cut(s) 549
BpuEI CTTGAG 2 cut(s) 443, 503
BsaHI GRCGYC 3 cut(s) 78, 112, 329
BsaI GGTCTC 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 399
BsaXI ACNNNNNCTCC 2 cut(s) 350, 380
Bsc4I CCNNNNNNNGG 5 cut(s) 54, 169, 307, 466, 554
Bse1I ACTGG 1 cut(s) 544
Bse3DI GCAATG 1 cut(s) 569
BseDI CCNNGG 1 cut(s) 399
BseGI GGATG 1 cut(s) 198
BseLI CCNNNNNNNGG 5 cut(s) 54, 169, 307, 466, 554
BseMI GCAATG 1 cut(s) 569
BseNI ACTGG 1 cut(s) 544
BseXI GCAGC 2 cut(s) 19, 531
BshFI GGCC 5 cut(s) 273, 300, 451, 558, 619
BshNI GGYRCC 2 cut(s) 77, 395
BsiHKAI GWGCWC 1 cut(s) 429
BslFI GGGAC 2 cut(s) 172, 580
BslI CCNNNNNNNGG 5 cut(s) 54, 169, 307, 466, 554
BsmAI GTCTC 2 cut(s) 19, 122
BsmBI CGTCTC 1 cut(s) 122
BsmFI GGGAC 2 cut(s) 172, 580
BsnI GGCC 5 cut(s) 273, 300, 451, 558, 619
Bso31I GGTCTC 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 429
Bsp143I GATC 5 cut(s) 205, 214, 253, 384, 509
BspACI CCGC 2 cut(s) 81, 452
BspANI GGCC 5 cut(s) 273, 300, 451, 558, 619
BspHI TCATGA 1 cut(s) 315
BspLI GGNNCC 4 cut(s) 79, 160, 161, 397
BspPI GGATC 2 cut(s) 222, 392
BspT107I GGYRCC 2 cut(s) 77, 395
BspTNI GGTCTC 1 cut(s) 19
BsrBI CCGCTC 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 569
BsrI ACTGG 1 cut(s) 544
BssECI CCNNGG 1 cut(s) 399
BssMI GATC 5 cut(s) 205, 214, 253, 384, 509
BssNI GRCGYC 3 cut(s) 78, 112, 329
BssT1I CCWWGG 1 cut(s) 399
Bst4CI ACNGT 2 cut(s) 286, 469
BstACI GRCGYC 3 cut(s) 78, 112, 329
BstF5I GGATG 1 cut(s) 198
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 5 cut(s) 208, 217, 256, 387, 512
BstMAI GTCTC 2 cut(s) 19, 122
BstMBI GATC 5 cut(s) 205, 214, 253, 384, 509
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 19, 531
BstX2I RGATCY 2 cut(s) 384, 509
BstYI RGATCY 2 cut(s) 384, 509
BsuRI GGCC 5 cut(s) 273, 300, 451, 558, 619
BtsCI GGATG 1 cut(s) 198
BtsI GCAGTG 1 cut(s) 451
BtsIMutI CAGTG 2 cut(s) 451, 614
CciI TCATGA 1 cut(s) 315
CfoI GCGC 1 cut(s) 80
Cfr13I GGNCC 4 cut(s) 159, 271, 449, 617
CseI GACGC 2 cut(s) 149, 318
Csp6I GTAC 1 cut(s) 348
CspCI CAANNNNNGTGG 2 cut(s) 513, 548
CviAII CATG 6 cut(s) 154, 235, 257, 316, 337, 614
CviQI GTAC 1 cut(s) 348
DinI GGCGCC 1 cut(s) 79
DpnI GATC 5 cut(s) 207, 216, 255, 386, 511
DpnII GATC 5 cut(s) 205, 214, 253, 384, 509
Eco130I CCWWGG 1 cut(s) 399
Eco147I AGGCCT 1 cut(s) 300
Eco31I GGTCTC 1 cut(s) 19
Eco47I GGWCC 1 cut(s) 159
EcoO109I RGGNCCY 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 399
EgeI GGCGCC 1 cut(s) 79
EheI GGCGCC 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 399
Esp3I CGTCTC 1 cut(s) 122
FaeI CATG 6 cut(s) 157, 238, 260, 319, 340, 617
FaiI YATR 7 cut(s) 102, 155, 236, 258, 317, 338, 615
FaqI GGGAC 2 cut(s) 172, 580
FatI CATG 6 cut(s) 153, 234, 256, 315, 336, 613
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 4 cut(s) 33, 81, 452, 545
FokI GGATG 1 cut(s) 205
Fsp4HI GCNGC 4 cut(s) 33, 81, 452, 545
FspBI CTAG 3 cut(s) 296, 507, 516
GlaI GCGC 1 cut(s) 79
GluI GCNGC 4 cut(s) 33, 81, 452, 545
HaeII RGCGCY 1 cut(s) 81
HaeIII GGCC 5 cut(s) 273, 300, 451, 558, 619
HgaI GACGC 2 cut(s) 149, 318
HhaI GCGC 1 cut(s) 80
Hin1I GRCGYC 3 cut(s) 78, 112, 329
Hin1II CATG 6 cut(s) 157, 238, 260, 319, 340, 617
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HincII GTYRAC 1 cut(s) 264
HindII GTYRAC 1 cut(s) 264
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 2 cut(s) 178, 473
HphI GGTGA 6 cut(s) 73, 83, 86, 257, 547, 605
Hpy166II GTNNAC 3 cut(s) 7, 139, 264
Hpy188III TCNNGA 3 cut(s) 316, 371, 507
Hpy8I GTNNAC 3 cut(s) 7, 139, 264
Hpy99I CGWCG 1 cut(s) 117
HpyAV CCTTC 3 cut(s) 46, 52, 311
HpyCH4III ACNGT 2 cut(s) 286, 469
HpyCH4IV ACGT 2 cut(s) 112, 489
HpyCH4V TGCA 2 cut(s) 104, 444
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpySE526I ACGT 2 cut(s) 112, 489
Hsp92I GRCGYC 3 cut(s) 78, 112, 329
Hsp92II CATG 6 cut(s) 157, 238, 260, 319, 340, 617
HspAI GCGC 1 cut(s) 78
KasI GGCGCC 1 cut(s) 77
KflI GGGWCCC 1 cut(s) 159
Kzo9I GATC 5 cut(s) 205, 214, 253, 384, 509
LmnI GCTCC 1 cut(s) 403
LpnPI CCDG 9 cut(s) 175, 293, 356, 373, 483, 525, 540, 567, 572
Lsp1109I GCAGC 2 cut(s) 19, 531
MaeI CTAG 3 cut(s) 296, 507, 516
MaeII ACGT 2 cut(s) 112, 489
MaeIII GTNAC 4 cut(s) 61, 71, 330, 535
MalI GATC 5 cut(s) 207, 216, 255, 386, 511
MbiI CCGCTC 1 cut(s) 83
MboI GATC 5 cut(s) 205, 214, 253, 384, 509
MboII GAAGA 1 cut(s) 159
MfeI CAATTG 1 cut(s) 105
MflI RGATCY 2 cut(s) 384, 509
MhlI GDGCHC 1 cut(s) 429
MluCI AATT 3 cut(s) 105, 230, 550
Mly113I GGCGCC 1 cut(s) 78
MnlI CCTC 8 cut(s) 4, 235, 236, 283, 315, 352, 386, 593
MslI CAYNNNNRTG 1 cut(s) 99
MunI CAATTG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 38
NarI GGCGCC 1 cut(s) 78
NdeII GATC 5 cut(s) 205, 214, 253, 384, 509
NlaIII CATG 6 cut(s) 157, 238, 260, 319, 340, 617
NlaIV GGNNCC 4 cut(s) 79, 160, 161, 397
NmuCI GTSAC 4 cut(s) 61, 71, 330, 535
PagI TCATGA 1 cut(s) 315
PceI AGGCCT 1 cut(s) 300
PfeI GAWTC 2 cut(s) 178, 473
PflFI GACNNNGTC 2 cut(s) 11, 114
PkrI GCNGC 4 cut(s) 34, 82, 453, 546
PluTI GGCGCC 1 cut(s) 81
PpuMI RGGWCCY 1 cut(s) 159
Psp5II RGGWCCY 1 cut(s) 159
PspN4I GGNNCC 4 cut(s) 79, 160, 161, 397
PspPI GGNCC 4 cut(s) 159, 271, 449, 617
PspPPI RGGWCCY 1 cut(s) 159
PsuI RGATCY 2 cut(s) 384, 509
PsyI GACNNNGTC 2 cut(s) 11, 114
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
RseI CAYNNNNRTG 1 cut(s) 99
SatI GCNGC 4 cut(s) 33, 81, 452, 545
Sau3AI GATC 5 cut(s) 205, 214, 253, 384, 509
Sau96I GGNCC 4 cut(s) 159, 271, 449, 617
SduI GDGCHC 1 cut(s) 429
SfoI GGCGCC 1 cut(s) 79
SinI GGWCC 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 2 cut(s) 422, 482
SmoI CTYRAG 2 cut(s) 422, 482
Sse9I AATT 3 cut(s) 105, 230, 550
SseBI AGGCCT 1 cut(s) 300
SsiI CCGC 2 cut(s) 81, 452
SspDI GGCGCC 1 cut(s) 77
SspMI CTAG 3 cut(s) 296, 507, 516
StuI AGGCCT 1 cut(s) 300
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 2 cut(s) 286, 469
TaiI ACGT 2 cut(s) 115, 492
TasI AATT 3 cut(s) 105, 230, 550
TauI GCSGC 2 cut(s) 83, 454
TfiI GAWTC 2 cut(s) 178, 473
TscAI CASTG 2 cut(s) 451, 614
TseFI GTSAC 4 cut(s) 61, 71, 330, 535
TseI GCWGC 2 cut(s) 32, 544
Tsp45I GTSAC 4 cut(s) 61, 71, 330, 535
TspDTI ATGAA 1 cut(s) 223
TspRI CASTG 2 cut(s) 451, 614
Tth111I GACNNNGTC 2 cut(s) 11, 114
VpaK11BI GGWCC 1 cut(s) 159
XapI RAATTY 1 cut(s) 230
XbaI TCTAGA 1 cut(s) 506
XcmI CCANNNNNNNNNTGG 2 cut(s) 104, 133
XmiI GTMKAC 1 cut(s) 6
XspI CTAG 3 cut(s) 296, 507, 516
ZraI GACGTC 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.