Rroxscaffold_5G00335340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000109
Physical Location & Seq
Reverse (-)
2743954 .. 2744539
586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00335340.1

Sequence Viewer

Length: 492 bp
ATGGTTGATCATGTTACCGCTCTTCGGCAACAACATTGGCGATCTCTCGAAGATGGTCGGACGTCCTTTGGCCCGCCGGTGTCGCTGCAGTTGTCTTCCCAACCCTTTGCGGTGGGGAGACTTCTCTCCATCATGGCCAAGCGTCGGGCTGATCCCAAGGCTTTCTTGGGGACCATAACCTCCCTATGGGGTCTTGGGAATCGTCTCTATGCACGTGTGGTCAAGGATCGTTTTGTGTTTCGGTTTTCAAATCTAGAGGATCATCCGAGGACACCGAGGGAGGGCCGTGGTTGGCAAGTTGGCGCCGGCTATGGCCGAGGCACCGTGGCGCTCATTGGAGCTACCTTAGGGGAGATAGTGCATCCGGACAAGACCGGAATTCGCAAGGGCACGGCGGCACGGGTTCGTATCCGCCACCTTTCGTCGTCTCCGGTGAAACGGGTTTTCCCTCCATCCACCTTTGATTTCACCTCGGGGCATTTGCTAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.11

Weight (kDa)

11.58

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 65
AccB1I GGYRCC 2 cut(s) 302, 320
AccBSI CCGCTC 1 cut(s) 20
AccIII TCCGGA 1 cut(s) 364
AciI CCGC 5 cut(s) 18, 74, 110, 395, 412
AclWI GGATC 3 cut(s) 146, 234, 267
AcoI YGGCCR 2 cut(s) 135, 313
AcsI RAATTY 1 cut(s) 378
AcvI CACGTG 1 cut(s) 215
AcyI GRCGYC 2 cut(s) 62, 303
AfiI CCNNNNNNNGG 4 cut(s) 24, 144, 186, 281
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 1 cut(s) 249
AluBI AGCT 1 cut(s) 341
AluI AGCT 1 cut(s) 341
Alw26I GTCTC 3 cut(s) 112, 209, 432
AlwI GGATC 3 cut(s) 146, 234, 267
Ama87I CYCGRG 1 cut(s) 472
Aor13HI TCCGGA 1 cut(s) 364
AoxI GGCC 4 cut(s) 70, 135, 283, 313
ApeKI GCWGC 1 cut(s) 85
ApoI RAATTY 1 cut(s) 378
AspLEI GCGC 2 cut(s) 305, 331
AspS9I GGNCC 3 cut(s) 71, 171, 283
AsuHPI GGTGA 2 cut(s) 445, 460
AvaI CYCGRG 1 cut(s) 472
AvaII GGWCC 1 cut(s) 171
AxyI CCTNAGG 1 cut(s) 346
BaeGI GKGCMC 1 cut(s) 392
BalI TGGCCA 1 cut(s) 137
BanI GGYRCC 2 cut(s) 302, 320
BbrPI CACGTG 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 72
BccI CCATC 3 cut(s) 47, 137, 460
BceAI ACGGC 2 cut(s) 270, 408
BciVI GTATCC 1 cut(s) 419
BclI TGATCA 1 cut(s) 7
BcoDI GTCTC 3 cut(s) 112, 209, 432
BfaI CTAG 1 cut(s) 254
BfmI CTRYAG 1 cut(s) 86
BfoI RGCGCY 2 cut(s) 306, 332
BfuI GTATCC 1 cut(s) 419
BisI GCNGC 2 cut(s) 86, 396
BlsI GCNGC 2 cut(s) 87, 397
Bme18I GGWCC 1 cut(s) 171
BmeT110I CYCGRG 1 cut(s) 472
BmgT120I GGNCC 3 cut(s) 71, 171, 283
BmiI GGNNCC 3 cut(s) 172, 304, 322
BmsI GCATC 1 cut(s) 370
BpiI GAAGAC 1 cut(s) 87
BsaAI YACGTR 1 cut(s) 215
BsaHI GRCGYC 2 cut(s) 62, 303
BsaJI CCNNGG 7 cut(s) 156, 266, 275, 286, 316, 324, 471
BsaWI WCCGGW 3 cut(s) 364, 374, 430
Bsc4I CCNNNNNNNGG 4 cut(s) 24, 144, 186, 281
Bse118I RCCGGY 2 cut(s) 76, 305
Bse21I CCTNAGG 1 cut(s) 346
BseAI TCCGGA 1 cut(s) 364
BseDI CCNNGG 7 cut(s) 156, 266, 275, 286, 316, 324, 471
BseGI GGATG 3 cut(s) 262, 361, 452
BseLI CCNNNNNNNGG 4 cut(s) 24, 144, 186, 281
BseSI GKGCMC 1 cut(s) 392
BseXI GCAGC 1 cut(s) 72
BshFI GGCC 4 cut(s) 72, 137, 285, 315
BshNI GGYRCC 2 cut(s) 302, 320
BsiHKCI CYCGRG 1 cut(s) 472
BsiSI CCGG 5 cut(s) 77, 306, 365, 375, 431
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 4 cut(s) 24, 144, 186, 281
BsmAI GTCTC 3 cut(s) 112, 209, 432
BsmBI CGTCTC 2 cut(s) 209, 432
BsmFI GGGAC 1 cut(s) 184
BsnI GGCC 4 cut(s) 72, 137, 285, 315
BsoBI CYCGRG 1 cut(s) 472
Bsp1286I GDGCHC 1 cut(s) 392
Bsp13I TCCGGA 1 cut(s) 364
Bsp143I GATC 5 cut(s) 7, 41, 151, 226, 259
BspACI CCGC 5 cut(s) 18, 74, 110, 395, 412
BspANI GGCC 4 cut(s) 72, 137, 285, 315
BspEI TCCGGA 1 cut(s) 364
BspLI GGNNCC 3 cut(s) 172, 304, 322
BspMAI CTGCAG 1 cut(s) 90
BspPI GGATC 3 cut(s) 146, 234, 267
BspQI GCTCTTC 1 cut(s) 27
BspT107I GGYRCC 2 cut(s) 302, 320
BsrBI CCGCTC 1 cut(s) 20
BsrFI RCCGGY 2 cut(s) 76, 305
BssAI RCCGGY 2 cut(s) 76, 305
BssECI CCNNGG 7 cut(s) 156, 266, 275, 286, 316, 324, 471
BssMI GATC 5 cut(s) 7, 41, 151, 226, 259
BssNI GRCGYC 2 cut(s) 62, 303
BssT1I CCWWGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 325
Bst6I CTCTTC 1 cut(s) 27
BstACI GRCGYC 2 cut(s) 62, 303
BstBAI YACGTR 1 cut(s) 215
BstC8I GCNNGC 2 cut(s) 74, 307
BstDEI CTNAG 1 cut(s) 346
BstDSI CCRYGG 2 cut(s) 286, 324
BstF5I GGATG 3 cut(s) 262, 361, 452
BstH2I RGCGCY 2 cut(s) 306, 332
BstHHI GCGC 2 cut(s) 305, 331
BstKTI GATC 5 cut(s) 10, 44, 154, 229, 262
BstMAI GTCTC 3 cut(s) 112, 209, 432
BstMBI GATC 5 cut(s) 7, 41, 151, 226, 259
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstSFI CTRYAG 1 cut(s) 86
BstSLI GKGCMC 1 cut(s) 392
BstV1I GCAGC 1 cut(s) 72
BstV2I GAAGAC 1 cut(s) 87
Bsu36I CCTNAGG 1 cut(s) 346
BsuI GTATCC 1 cut(s) 419
BsuRI GGCC 4 cut(s) 72, 137, 285, 315
BtgI CCRYGG 2 cut(s) 286, 324
BtsCI GGATG 3 cut(s) 262, 361, 452
Cac8I GCNNGC 2 cut(s) 74, 307
CfoI GCGC 2 cut(s) 305, 331
Cfr10I RCCGGY 2 cut(s) 76, 305
Cfr13I GGNCC 3 cut(s) 71, 171, 283
CseI GACGC 1 cut(s) 131
CviAII CATG 2 cut(s) 11, 133
CviJI RGCY 8 cut(s) 72, 137, 149, 161, 285, 309, 315, 341
CviKI_1 RGCY 8 cut(s) 72, 137, 149, 161, 285, 309, 315, 341
DdeI CTNAG 1 cut(s) 346
DinI GGCGCC 1 cut(s) 304
DpnI GATC 5 cut(s) 9, 43, 153, 228, 261
DpnII GATC 5 cut(s) 7, 41, 151, 226, 259
EaeI YGGCCR 2 cut(s) 135, 313
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
EciI GGCGGA 1 cut(s) 401
Eco130I CCWWGG 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 171
Eco72I CACGTG 1 cut(s) 215
Eco81I CCTNAGG 1 cut(s) 346
Eco88I CYCGRG 1 cut(s) 472
EcoRI GAATTC 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 156
EgeI GGCGCC 1 cut(s) 304
EheI GGCGCC 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 156
Esp3I CGTCTC 2 cut(s) 209, 432
FaeI CATG 2 cut(s) 14, 136
FaiI YATR 6 cut(s) 12, 134, 176, 187, 210, 312
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FaqI GGGAC 1 cut(s) 184
FatI CATG 2 cut(s) 10, 132
FauI CCCGC 1 cut(s) 81
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 2 cut(s) 86, 396
FokI GGATG 3 cut(s) 249, 348, 439
Fsp4HI GCNGC 2 cut(s) 86, 396
FspBI CTAG 1 cut(s) 254
GlaI GCGC 2 cut(s) 304, 330
GluI GCNGC 2 cut(s) 86, 396
HaeII RGCGCY 2 cut(s) 306, 332
HaeIII GGCC 4 cut(s) 72, 137, 285, 315
HapII CCGG 5 cut(s) 77, 306, 365, 375, 431
HgaI GACGC 1 cut(s) 131
HhaI GCGC 2 cut(s) 305, 331
Hin1I GRCGYC 2 cut(s) 62, 303
Hin1II CATG 2 cut(s) 14, 136
Hin6I GCGC 2 cut(s) 303, 329
HinP1I GCGC 2 cut(s) 303, 329
HinfI GANTC 1 cut(s) 199
HpaII CCGG 5 cut(s) 77, 306, 365, 375, 431
HphI GGTGA 2 cut(s) 445, 460
Hpy188I TCNGA 2 cut(s) 60, 267
Hpy188III TCNNGA 3 cut(s) 47, 254, 365
Hpy99I CGWCG 2 cut(s) 147, 427
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4IV ACGT 2 cut(s) 62, 214
HpyCH4V TGCA 3 cut(s) 88, 212, 361
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
HpyF3I CTNAG 1 cut(s) 346
HpySE526I ACGT 2 cut(s) 62, 214
Hsp92I GRCGYC 2 cut(s) 62, 303
Hsp92II CATG 2 cut(s) 14, 136
HspAI GCGC 2 cut(s) 303, 329
KasI GGCGCC 1 cut(s) 302
Kpn2I TCCGGA 1 cut(s) 364
KroI GCCGGC 1 cut(s) 305
KroNI GCCGGC 1 cut(s) 307
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 5 cut(s) 7, 41, 151, 226, 259
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 338
LpnPI CCDG 5 cut(s) 90, 319, 378, 388, 444
Lsp1109I GCAGC 1 cut(s) 72
LweI GCATC 1 cut(s) 370
MaeI CTAG 1 cut(s) 254
MaeII ACGT 2 cut(s) 62, 214
MaeIII GTNAC 1 cut(s) 13
MalI GATC 5 cut(s) 9, 43, 153, 228, 261
MbiI CCGCTC 1 cut(s) 20
MboI GATC 5 cut(s) 7, 41, 151, 226, 259
MboII GAAGA 3 cut(s) 14, 62, 87
MhlI GDGCHC 1 cut(s) 392
MlsI TGGCCA 1 cut(s) 137
MluCI AATT 1 cut(s) 378
MluNI TGGCCA 1 cut(s) 137
Mly113I GGCGCC 1 cut(s) 303
MmeI TCCRAC 1 cut(s) 38
MnlI CCTC 8 cut(s) 190, 250, 261, 270, 274, 311, 459, 481
Mox20I TGGCCA 1 cut(s) 137
MroI TCCGGA 1 cut(s) 364
MroNI GCCGGC 1 cut(s) 305
MscI TGGCCA 1 cut(s) 137
Msp20I TGGCCA 1 cut(s) 137
MspI CCGG 5 cut(s) 77, 306, 365, 375, 431
MwoI GCNNNNNNNGC 1 cut(s) 82
NaeI GCCGGC 1 cut(s) 307
NarI GGCGCC 1 cut(s) 303
NdeII GATC 5 cut(s) 7, 41, 151, 226, 259
NgoMIV GCCGGC 1 cut(s) 305
NlaIII CATG 2 cut(s) 14, 136
NlaIV GGNNCC 3 cut(s) 172, 304, 322
NmeAIII GCCGAG 1 cut(s) 341
PciSI GCTCTTC 1 cut(s) 27
PdiI GCCGGC 1 cut(s) 307
PfeI GAWTC 1 cut(s) 199
PkrI GCNGC 2 cut(s) 87, 397
PluTI GGCGCC 1 cut(s) 306
PmaCI CACGTG 1 cut(s) 215
PmlI CACGTG 1 cut(s) 215
Ppu21I YACGTR 1 cut(s) 215
PspCI CACGTG 1 cut(s) 215
PspN4I GGNNCC 3 cut(s) 172, 304, 322
PspPI GGNCC 3 cut(s) 71, 171, 283
PstI CTGCAG 1 cut(s) 90
SapI GCTCTTC 1 cut(s) 27
SatI GCNGC 2 cut(s) 86, 396
Sau3AI GATC 5 cut(s) 7, 41, 151, 226, 259
Sau96I GGNCC 3 cut(s) 71, 171, 283
SduI GDGCHC 1 cut(s) 392
SetI ASST 8 cut(s) 65, 182, 217, 343, 347, 420, 461, 473
SfaNI GCATC 1 cut(s) 370
SfcI CTRYAG 1 cut(s) 86
SfoI GGCGCC 1 cut(s) 304
SgrAI CRCCGGYG 1 cut(s) 76
SinI GGWCC 1 cut(s) 171
Sse9I AATT 1 cut(s) 378
SsiI CCGC 5 cut(s) 18, 74, 110, 395, 412
SspDI GGCGCC 1 cut(s) 302
SspMI CTAG 1 cut(s) 254
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 325
TaiI ACGT 2 cut(s) 65, 217
TaqI TCGA 1 cut(s) 48
TasI AATT 1 cut(s) 378
TauI GCSGC 1 cut(s) 398
TfiI GAWTC 1 cut(s) 199
TseI GCWGC 1 cut(s) 85
VpaK11BI GGWCC 1 cut(s) 171
XapI RAATTY 1 cut(s) 378
XbaI TCTAGA 1 cut(s) 253
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XspI CTAG 1 cut(s) 254
ZraI GACGTC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.