Rmu_sc0006959.1_g000019

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006959.1
OG0000109
Physical Location & Seq
Reverse (-)
69969 .. 71207
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006959.1_g000019.1.cds

Sequence Viewer

Length: 546 bp
atggcgttcaagcctgaagctctggtcggagctaccagagtcgaactccgtctcgatcagagccacaaaatagcgccgcctcaacgaagttctgagatcgtcgacggagaggccgaacttccggtcgctctgaaccgggtgaccggaatccgacaaccggtgaccggttaccagattcaagcaaaaattgaccagaatccagcggccgatgacggggctccgacgaagtcttctatgaatcgattgtctgtgcatgagcagggagacaaattcgtgctgaaatttatggtggagaaggagcacaaccagatcatcaacagtggccctttgttttacagcaggtctctgctttcccttaccgcatttgatgggttggaggatccggctagggttccgatctctacattctcggtatgggacaaaatcttaggtcttccaccagtgctgatgacagaggaggttgtgtatatggtcatattagaggtggcaagcgggccactagccatgagcacggtacagcccaagcccgttagtggcccggcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

181

Amino Acids

19.69

Weight (kDa)

5.39

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 330
AccI GTMKAC 1 cut(s) 102
AciI CCGC 4 cut(s) 77, 203, 360, 492
AclWI GGATC 2 cut(s) 374, 387
AcoI YGGCCR 1 cut(s) 204
AcsI RAATTY 2 cut(s) 269, 281
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 1 cut(s) 516
AfiI CCNNNNNNNGG 4 cut(s) 157, 164, 213, 533
AgeI ACCGGT 2 cut(s) 157, 164
AgsI TTSAA 2 cut(s) 10, 179
AluBI AGCT 2 cut(s) 20, 32
AluI AGCT 2 cut(s) 20, 32
Alw21I GWGCWC 2 cut(s) 303, 512
Alw26I GTCTC 3 cut(s) 56, 258, 348
AlwI GGATC 2 cut(s) 374, 387
AoxI GGCC 5 cut(s) 111, 204, 322, 494, 535
ApoI RAATTY 2 cut(s) 269, 281
ArsI GACNNNNNNTTYG 2 cut(s) 108, 140
AsiGI ACCGGT 2 cut(s) 157, 164
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 3 cut(s) 323, 494, 536
AsuC2I CCSGG 2 cut(s) 137, 539
AsuHPI GGTGA 2 cut(s) 151, 172
BamHI GGATCC 1 cut(s) 379
BanII GRGCYC 1 cut(s) 220
BbsI GAAGAC 2 cut(s) 222, 425
Bbv12I GWGCWC 2 cut(s) 303, 512
BccI CCATC 1 cut(s) 362
BcnI CCSGG 2 cut(s) 137, 539
BcoDI GTCTC 3 cut(s) 56, 258, 348
BfaI CTAG 2 cut(s) 387, 500
BfoI RGCGCY 1 cut(s) 77
BfuAI ACCTGC 1 cut(s) 330
BisI GCNGC 2 cut(s) 77, 204
BlsI GCNGC 2 cut(s) 78, 205
Bme1390I CCNGG 2 cut(s) 137, 539
BmgT120I GGNCC 3 cut(s) 323, 494, 536
BmiI GGNNCC 3 cut(s) 219, 381, 393
BmrFI CCNGG 2 cut(s) 137, 539
BpiI GAAGAC 2 cut(s) 222, 425
BplI GAGNNNNNCTC 2 cut(s) 30, 62
BpuMI CCSGG 2 cut(s) 137, 539
Bsa29I ATCGAT 1 cut(s) 241
BsaI GGTCTC 1 cut(s) 348
BsaWI WCCGGW 4 cut(s) 121, 143, 157, 164
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bsc4I CCNNNNNNNGG 4 cut(s) 157, 164, 213, 533
Bse118I RCCGGY 2 cut(s) 157, 164
Bse1I ACTGG 1 cut(s) 440
BseCI ATCGAT 1 cut(s) 241
BseLI CCNNNNNNNGG 4 cut(s) 157, 164, 213, 533
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 440
BseRI GAGGAG 1 cut(s) 470
BseX3I CGGCCG 1 cut(s) 204
Bsh1285I CGRYCG 2 cut(s) 126, 207
BshFI GGCC 5 cut(s) 113, 206, 324, 496, 537
BshTI ACCGGT 2 cut(s) 157, 164
BshVI ATCGAT 1 cut(s) 241
BsiEI CGRYCG 2 cut(s) 126, 207
BsiHKAI GWGCWC 2 cut(s) 303, 512
BsiSI CCGG 7 cut(s) 122, 136, 144, 158, 165, 383, 539
BslFI GGGAC 1 cut(s) 431
BslI CCNNNNNNNGG 4 cut(s) 157, 164, 213, 533
BsmAI GTCTC 3 cut(s) 56, 258, 348
BsmBI CGTCTC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 431
BsnI GGCC 5 cut(s) 113, 206, 324, 496, 537
Bso31I GGTCTC 1 cut(s) 348
Bsp1286I GDGCHC 3 cut(s) 220, 303, 512
Bsp143I GATC 5 cut(s) 55, 96, 309, 379, 396
BspACI CCGC 4 cut(s) 77, 203, 360, 492
BspANI GGCC 5 cut(s) 113, 206, 324, 496, 537
BspCNI CTCAG 1 cut(s) 85
BspDI ATCGAT 1 cut(s) 241
BspLI GGNNCC 3 cut(s) 219, 381, 393
BspMI ACCTGC 1 cut(s) 330
BspPI GGATC 2 cut(s) 374, 387
BspTNI GGTCTC 1 cut(s) 348
BsrFI RCCGGY 2 cut(s) 157, 164
BsrI ACTGG 1 cut(s) 440
BssAI RCCGGY 2 cut(s) 157, 164
BssMI GATC 5 cut(s) 55, 96, 309, 379, 396
Bst4CI ACNGT 2 cut(s) 320, 514
BstC8I GCNNGC 2 cut(s) 490, 494
BstDEI CTNAG 2 cut(s) 93, 427
BstEII GGTNACC 3 cut(s) 139, 160, 167
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 5 cut(s) 58, 99, 312, 382, 399
BstMAI GTCTC 3 cut(s) 56, 258, 348
BstMBI GATC 5 cut(s) 55, 96, 309, 379, 396
BstMCI CGRYCG 2 cut(s) 126, 207
BstPI GGTNACC 3 cut(s) 139, 160, 167
BstSCI CCNGG 2 cut(s) 135, 537
BstV2I GAAGAC 2 cut(s) 222, 425
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
BstZI CGGCCG 1 cut(s) 204
Bsu15I ATCGAT 1 cut(s) 241
BsuRI GGCC 5 cut(s) 113, 206, 324, 496, 537
BsuTUI ATCGAT 1 cut(s) 241
BtsIMutI CAGTG 2 cut(s) 325, 447
BveI ACCTGC 1 cut(s) 330
Cac8I GCNNGC 2 cut(s) 490, 494
CfoI GCGC 1 cut(s) 76
Cfr10I RCCGGY 2 cut(s) 157, 164
Cfr13I GGNCC 3 cut(s) 323, 494, 536
ClaI ATCGAT 1 cut(s) 241
Csp6I GTAC 1 cut(s) 515
CspAI ACCGGT 2 cut(s) 157, 164
CviAII CATG 2 cut(s) 254, 505
CviQI GTAC 1 cut(s) 515
DdeI CTNAG 2 cut(s) 93, 427
DpnI GATC 5 cut(s) 57, 98, 311, 381, 398
DpnII GATC 5 cut(s) 55, 96, 309, 379, 396
EaeI YGGCCR 1 cut(s) 204
EagI CGGCCG 1 cut(s) 204
EclXI CGGCCG 1 cut(s) 204
Eco24I GRGCYC 1 cut(s) 220
Eco31I GGTCTC 1 cut(s) 348
Eco52I CGGCCG 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 36
Eco91I GGTNACC 3 cut(s) 139, 160, 167
EcoO65I GGTNACC 3 cut(s) 139, 160, 167
EcoT38I GRGCYC 1 cut(s) 220
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 2 cut(s) 257, 508
FaiI YATR 9 cut(s) 236, 255, 287, 415, 468, 470, 476, 506, 544
FaqI GGGAC 1 cut(s) 431
FatI CATG 2 cut(s) 253, 504
FauI CCCGC 1 cut(s) 485
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 2 cut(s) 77, 204
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 2 cut(s) 77, 204
FspBI CTAG 2 cut(s) 387, 500
GlaI GCGC 1 cut(s) 75
GluI GCNGC 2 cut(s) 77, 204
HaeII RGCGCY 1 cut(s) 77
HaeIII GGCC 5 cut(s) 113, 206, 324, 496, 537
HapII CCGG 7 cut(s) 122, 136, 144, 158, 165, 383, 539
HhaI GCGC 1 cut(s) 76
Hin1II CATG 2 cut(s) 257, 508
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 5 cut(s) 39, 147, 175, 196, 238
HpaII CCGG 7 cut(s) 122, 136, 144, 158, 165, 383, 539
HphI GGTGA 2 cut(s) 151, 172
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 7 cut(s) 29, 60, 94, 132, 152, 222, 396
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 3 cut(s) 104, 107, 226
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 2 cut(s) 320, 514
HpyCH4V TGCA 1 cut(s) 253
HpyF3I CTNAG 2 cut(s) 93, 427
Hsp92II CATG 2 cut(s) 257, 508
HspAI GCGC 1 cut(s) 74
Kzo9I GATC 5 cut(s) 55, 96, 309, 379, 396
LmnI GCTCC 3 cut(s) 29, 223, 298
MaeI CTAG 2 cut(s) 387, 500
MaeIII GTNAC 3 cut(s) 139, 160, 167
MalI GATC 5 cut(s) 57, 98, 311, 381, 398
MboI GATC 5 cut(s) 55, 96, 309, 379, 396
MboII GAAGA 2 cut(s) 222, 425
MflI RGATCY 1 cut(s) 379
MhlI GDGCHC 3 cut(s) 220, 303, 512
MluCI AATT 3 cut(s) 186, 269, 281
MlyI GAGTC 1 cut(s) 48
MmeI TCCRAC 4 cut(s) 7, 175, 245, 354
MnlI CCTC 6 cut(s) 90, 103, 370, 448, 451, 475
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 7 cut(s) 122, 136, 144, 158, 165, 383, 539
MspR9I CCNGG 2 cut(s) 137, 539
NciI CCSGG 2 cut(s) 137, 539
NdeII GATC 5 cut(s) 55, 96, 309, 379, 396
NlaIII CATG 2 cut(s) 257, 508
NlaIV GGNNCC 3 cut(s) 219, 381, 393
NmuCI GTSAC 2 cut(s) 139, 160
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PfeI GAWTC 4 cut(s) 147, 175, 196, 238
PflFI GACNNNGTC 1 cut(s) 226
PinAI ACCGGT 2 cut(s) 157, 164
PkrI GCNGC 2 cut(s) 78, 205
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PspEI GGTNACC 3 cut(s) 139, 160, 167
PspN4I GGNNCC 3 cut(s) 219, 381, 393
PspPI GGNCC 3 cut(s) 323, 494, 536
PsuI RGATCY 1 cut(s) 379
PsyI GACNNNGTC 1 cut(s) 226
RsaI GTAC 1 cut(s) 516
RsaNI GTAC 1 cut(s) 515
SalI GTCGAC 1 cut(s) 101
SatI GCNGC 2 cut(s) 77, 204
Sau3AI GATC 5 cut(s) 55, 96, 309, 379, 396
Sau96I GGNCC 3 cut(s) 323, 494, 536
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 2 cut(s) 137, 539
SduI GDGCHC 3 cut(s) 220, 303, 512
SetI ASST 6 cut(s) 22, 34, 344, 433, 462, 486
SgrDI CGTCGACG 1 cut(s) 101
Sse9I AATT 3 cut(s) 186, 269, 281
SsiI CCGC 4 cut(s) 77, 203, 360, 492
SspMI CTAG 2 cut(s) 387, 500
StyD4I CCNGG 2 cut(s) 135, 537
TaaI ACNGT 2 cut(s) 320, 514
TaqI TCGA 4 cut(s) 42, 54, 102, 241
TasI AATT 3 cut(s) 186, 269, 281
TauI GCSGC 2 cut(s) 79, 206
TfiI GAWTC 4 cut(s) 147, 175, 196, 238
TscAI CASTG 2 cut(s) 325, 447
TseFI GTSAC 2 cut(s) 139, 160
Tsp45I GTSAC 2 cut(s) 139, 160
TspDTI ATGAA 1 cut(s) 251
TspGWI ACGGA 2 cut(s) 38, 120
TspRI CASTG 2 cut(s) 325, 447
Tth111I GACNNNGTC 1 cut(s) 226
XapI RAATTY 2 cut(s) 269, 281
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 2 cut(s) 387, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.