Rmu_sc0003558.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003558.1
OG0000109
Physical Location & Seq
Reverse (-)
2 .. 1156
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003558.1_g000001.1.cds

Sequence Viewer

Length: 1155 bp
atggttgatcacgtcaccgctcgtctcgctgccgccttggccatctcggaggacggcctgacgtcctttggccccgctggcgctgctgctgtgtcttccaaccattttgctgtgggtaaattgctctctgttactgctaaatgtcgcgcctatcccaaggcttttatgggcaccatgacctctatctgggggcttggtaatcgtttgtctatcagggcacaccaaaaccggtatgtgtttcaattctctcacttggaagacagatcaaggattgtggatggtggtccgtggttctttggtaagtgggcgcttgctatggcggagttcgatggcctgcagagtgtcgctgctgtcccgctcctctctgtgccgatttgggttgagattatgggcctccctcctgctcttatcactaagggatcagtggcgttaggggaggtgttgtacctcgacaggccggggattcgaaagggtacggcgagggttcagattcgacatgtcttgtcaacgccggtgcttcaggtattccctcattccatttttgatttcacgtctggagcttctgctactatgagattcaaatatgaacatctcgttggattctgtcgtgtctgtgggatgatggagcacccacgatctggttgtactggagccctagaggcggtggtggtcttagtcggccataaccctaaccctaactctgctagggtttcatcacctgctagtcagcaagctctaagccttgttgaggtgttggctcaatctccagcaccgaatttgttcgctgctacgcccagatcacttcacattcctggtatttttggatcggccttcgctgcacatttggccaaggttccagctccagtaactgtacctatcatgaagcctatgcaggttgatgatatggccgataatctcattacagggaagaagagatctgcagcggtggctttagtacaatattcaaagcgcaagagagcagatgttgtgccccctccaactacttcggttgtgttggattttgaaccagaactagctctgaagaataccaatggcatcattctggtgtcccctgctaagaaggcaaaggttgggcgccctccgagtcggaagaacaaccctaaacctgctagtttgaagcccaggaagctgaca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

385

Amino Acids

41.18

Weight (kDa)

10.13

Isoelectric Point (pI)

32.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 727
AatII GACGTC 1 cut(s) 65
Acc36I ACCTGC 3 cut(s) 727, 883, 1135
AccB1I GGYRCC 2 cut(s) 170, 1095
AccB7I CCANNNNNTGG 1 cut(s) 638
AccBSI CCGCTC 2 cut(s) 20, 358
AccII CGCG 1 cut(s) 147
AciI CCGC 7 cut(s) 18, 33, 75, 320, 356, 662, 944
AclWI GGATC 2 cut(s) 427, 832
AcoI YGGCCR 4 cut(s) 39, 679, 846, 906
AcsI RAATTY 1 cut(s) 775
AcuI CTGAAG 2 cut(s) 503, 1061
AcyI GRCGYC 2 cut(s) 62, 1096
AfaI GTAC 5 cut(s) 446, 475, 646, 873, 957
AfiI CCNNNNNNNGG 4 cut(s) 186, 638, 661, 748
AflIII ACRYGT 1 cut(s) 496
AgeI ACCGGT 1 cut(s) 228
AgsI TTSAA 5 cut(s) 242, 580, 966, 1025, 1138
AjiI CACGTC 2 cut(s) 13, 552
AjnI CCWGG 2 cut(s) 811, 1142
AjuI GAANNNNNNNTTGG 2 cut(s) 579, 611
AluBI AGCT 5 cut(s) 560, 734, 860, 1037, 1150
AluI AGCT 5 cut(s) 560, 734, 860, 1037, 1150
Alw21I GWGCWC 1 cut(s) 630
Alw26I GTCTC 1 cut(s) 29
AlwI GGATC 2 cut(s) 427, 832
AlwNI CAGNNNCTG 1 cut(s) 869
ApeKI GCWGC 7 cut(s) 29, 83, 86, 347, 785, 836, 941
ApoI RAATTY 1 cut(s) 775
AsiGI ACCGGT 1 cut(s) 228
Asp700I GAANNNNTTC 1 cut(s) 779
AspLEI GCGC 5 cut(s) 83, 149, 310, 972, 1098
AspS9I GGNCC 3 cut(s) 71, 284, 391
AsuC2I CCSGG 1 cut(s) 459
AsuHPI GGTGA 2 cut(s) 7, 708
AsuII TTCGAA 1 cut(s) 466
AvaII GGWCC 1 cut(s) 284
BaeGI GKGCMC 3 cut(s) 173, 220, 993
BalI TGGCCA 2 cut(s) 41, 848
BanI GGYRCC 2 cut(s) 170, 1095
BanII GRGCYC 1 cut(s) 655
BbsI GAAGAC 2 cut(s) 87, 264
Bbv12I GWGCWC 1 cut(s) 630
BbvI GCAGC 7 cut(s) 16, 70, 73, 334, 772, 823, 953
BccI CCATC 4 cut(s) 50, 272, 323, 616
BceAI ACGGC 2 cut(s) 70, 492
BciT130I CCWGG 2 cut(s) 813, 1144
BclI TGATCA 1 cut(s) 7
BcnI CCSGG 1 cut(s) 459
BcoDI GTCTC 1 cut(s) 29
BfaI CTAG 5 cut(s) 656, 705, 723, 1034, 1131
BfmI CTRYAG 2 cut(s) 335, 939
BfoI RGCGCY 3 cut(s) 84, 311, 1099
BfuAI ACCTGC 3 cut(s) 727, 883, 1135
BglI GCCNNNNNGGC 3 cut(s) 38, 78, 659
BglII AGATCT 1 cut(s) 935
BisI GCNGC 8 cut(s) 30, 33, 84, 87, 348, 786, 837, 942
BlsI GCNGC 8 cut(s) 31, 34, 85, 88, 349, 787, 838, 943
Bme1390I CCNGG 3 cut(s) 459, 813, 1144
Bme18I GGWCC 1 cut(s) 284
BmgBI CACGTC 2 cut(s) 13, 552
BmgT120I GGNCC 3 cut(s) 71, 284, 391
BmiI GGNNCC 5 cut(s) 73, 172, 652, 855, 1097
BmrFI CCNGG 3 cut(s) 459, 813, 1144
BmsI GCATC 1 cut(s) 1065
BpiI GAAGAC 2 cut(s) 87, 264
BpmI CTGGAG 4 cut(s) 576, 669, 750, 846
Bpu14I TTCGAA 1 cut(s) 466
BpuMI CCSGG 1 cut(s) 459
BsaHI GRCGYC 2 cut(s) 62, 1096
BsaJI CCNNGG 6 cut(s) 36, 156, 287, 458, 849, 1142
BsaWI WCCGGW 1 cut(s) 228
BsaXI ACNNNNNCTCC 2 cut(s) 428, 458
Bsc4I CCNNNNNNNGG 4 cut(s) 186, 638, 661, 748
Bse118I RCCGGY 2 cut(s) 228, 511
Bse1I ACTGG 2 cut(s) 652, 863
BseBI CCWGG 2 cut(s) 813, 1144
BseDI CCNNGG 6 cut(s) 36, 156, 287, 458, 849, 1142
BseGI GGATG 2 cut(s) 283, 624
BseLI CCNNNNNNNGG 4 cut(s) 186, 638, 661, 748
BseNI ACTGG 2 cut(s) 652, 863
BseRI GAGGAG 1 cut(s) 350
BseSI GKGCMC 3 cut(s) 173, 220, 993
BseXI GCAGC 7 cut(s) 16, 70, 73, 334, 772, 823, 953
BsgI GTGCAG 1 cut(s) 822
Bsh1236I CGCG 1 cut(s) 147
BshNI GGYRCC 2 cut(s) 170, 1095
BshTI ACCGGT 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 630
BsiSI CCGG 3 cut(s) 229, 458, 512
BslFI GGGAC 2 cut(s) 338, 1054
BslI CCNNNNNNNGG 4 cut(s) 186, 638, 661, 748
BsmAI GTCTC 1 cut(s) 29
BsmBI CGTCTC 1 cut(s) 29
BsmFI GGGAC 2 cut(s) 338, 1054
Bsp119I TTCGAA 1 cut(s) 466
Bsp1286I GDGCHC 5 cut(s) 173, 220, 630, 655, 993
Bsp143I GATC 7 cut(s) 7, 263, 419, 635, 797, 824, 935
BspACI CCGC 7 cut(s) 18, 33, 75, 320, 356, 662, 944
BspFNI CGCG 1 cut(s) 147
BspHI TCATGA 1 cut(s) 879
BspLI GGNNCC 5 cut(s) 73, 172, 652, 855, 1097
BspMAI CTGCAG 2 cut(s) 339, 943
BspMI ACCTGC 3 cut(s) 727, 883, 1135
BspPI GGATC 2 cut(s) 427, 832
BspT104I TTCGAA 1 cut(s) 466
BspT107I GGYRCC 2 cut(s) 170, 1095
BsrBI CCGCTC 2 cut(s) 20, 358
BsrFI RCCGGY 2 cut(s) 228, 511
BsrI ACTGG 2 cut(s) 652, 863
BssAI RCCGGY 2 cut(s) 228, 511
BssECI CCNNGG 6 cut(s) 36, 156, 287, 458, 849, 1142
BssMI GATC 7 cut(s) 7, 263, 419, 635, 797, 824, 935
BssNI GRCGYC 2 cut(s) 62, 1096
BssT1I CCWWGG 3 cut(s) 36, 156, 849
Bst2UI CCWGG 2 cut(s) 813, 1144
Bst4CI ACNGT 1 cut(s) 871
Bst6I CTCTTC 1 cut(s) 926
BstACI GRCGYC 2 cut(s) 62, 1096
BstBI TTCGAA 1 cut(s) 466
BstC8I GCNNGC 4 cut(s) 79, 312, 335, 732
BstDEI CTNAG 4 cut(s) 414, 673, 737, 1077
BstDSI CCRYGG 1 cut(s) 287
BstENI CCTNNNNNAGG 1 cut(s) 746
BstF5I GGATG 2 cut(s) 283, 624
BstFNI CGCG 1 cut(s) 147
BstH2I RGCGCY 3 cut(s) 84, 311, 1099
BstHHI GCGC 5 cut(s) 83, 149, 310, 972, 1098
BstKTI GATC 7 cut(s) 10, 266, 422, 638, 800, 827, 938
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 7 cut(s) 7, 263, 419, 635, 797, 824, 935
BstNI CCWGG 2 cut(s) 813, 1144
BstNSI RCATGY 1 cut(s) 500
BstSCI CCNGG 3 cut(s) 457, 811, 1142
BstSFI CTRYAG 2 cut(s) 335, 939
BstSLI GKGCMC 3 cut(s) 173, 220, 993
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 7 cut(s) 16, 70, 73, 334, 772, 823, 953
BstV2I GAAGAC 2 cut(s) 87, 264
BstX2I RGATCY 1 cut(s) 935
BstYI RGATCY 1 cut(s) 935
BtgI CCRYGG 1 cut(s) 287
BtrI CACGTC 2 cut(s) 13, 552
BtsCI GGATG 2 cut(s) 283, 624
BtsIMutI CAGTG 1 cut(s) 429
BveI ACCTGC 3 cut(s) 727, 883, 1135
Cac8I GCNNGC 4 cut(s) 79, 312, 335, 732
CaiI CAGNNNCTG 1 cut(s) 869
CciI TCATGA 1 cut(s) 879
CfoI GCGC 5 cut(s) 83, 149, 310, 972, 1098
Cfr10I RCCGGY 2 cut(s) 228, 511
Cfr13I GGNCC 3 cut(s) 71, 284, 391
Csp6I GTAC 5 cut(s) 445, 474, 645, 872, 956
CspAI ACCGGT 1 cut(s) 228
CspCI CAANNNNNGTGG 2 cut(s) 255, 290
CviAII CATG 3 cut(s) 175, 497, 880
CviQI GTAC 5 cut(s) 445, 474, 645, 872, 956
DdeI CTNAG 4 cut(s) 414, 673, 737, 1077
DinI GGCGCC 1 cut(s) 1097
DpnI GATC 7 cut(s) 9, 265, 421, 637, 799, 826, 937
DpnII GATC 7 cut(s) 7, 263, 419, 635, 797, 824, 935
EaeI YGGCCR 4 cut(s) 39, 679, 846, 906
Eam1104I CTCTTC 1 cut(s) 926
EarI CTCTTC 1 cut(s) 926
EciI GGCGGA 1 cut(s) 335
Eco130I CCWWGG 3 cut(s) 36, 156, 849
Eco24I GRGCYC 1 cut(s) 655
Eco47I GGWCC 1 cut(s) 284
Eco57I CTGAAG 2 cut(s) 503, 1061
EcoNI CCTNNNNNAGG 1 cut(s) 746
EcoRII CCWGG 2 cut(s) 811, 1142
EcoT14I CCWWGG 3 cut(s) 36, 156, 849
EcoT38I GRGCYC 1 cut(s) 655
EgeI GGCGCC 1 cut(s) 1097
EheI GGCGCC 1 cut(s) 1097
ErhI CCWWGG 3 cut(s) 36, 156, 849
Esp3I CGTCTC 1 cut(s) 29
FaeI CATG 3 cut(s) 178, 500, 883
FaqI GGGAC 2 cut(s) 338, 1054
FatI CATG 3 cut(s) 174, 496, 879
FauI CCCGC 2 cut(s) 82, 363
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 8 cut(s) 30, 33, 84, 87, 348, 786, 837, 942
FokI GGATG 2 cut(s) 290, 631
FriOI GRGCYC 1 cut(s) 655
Fsp4HI GCNGC 8 cut(s) 30, 33, 84, 87, 348, 786, 837, 942
FspBI CTAG 5 cut(s) 656, 705, 723, 1034, 1131
GlaI GCGC 5 cut(s) 82, 148, 309, 971, 1097
GluI GCNGC 8 cut(s) 30, 33, 84, 87, 348, 786, 837, 942
GsuI CTGGAG 4 cut(s) 576, 669, 750, 846
HaeII RGCGCY 3 cut(s) 84, 311, 1099
HapII CCGG 3 cut(s) 229, 458, 512
HhaI GCGC 5 cut(s) 83, 149, 310, 972, 1098
Hin1I GRCGYC 2 cut(s) 62, 1096
Hin1II CATG 3 cut(s) 178, 500, 883
Hin6I GCGC 5 cut(s) 81, 147, 308, 970, 1096
HinP1I GCGC 5 cut(s) 81, 147, 308, 970, 1096
HincII GTYRAC 1 cut(s) 507
HindII GTYRAC 1 cut(s) 507
HinfI GANTC 5 cut(s) 463, 490, 576, 600, 1105
HpaII CCGG 3 cut(s) 229, 458, 512
HphI GGTGA 2 cut(s) 7, 708
Hpy166II GTNNAC 1 cut(s) 507
Hpy188I TCNGA 5 cut(s) 49, 489, 1041, 1104, 1110
Hpy188III TCNNGA 2 cut(s) 555, 880
Hpy8I GTNNAC 1 cut(s) 507
HpyAV CCTTC 2 cut(s) 841, 1075
HpyCH4III ACNGT 1 cut(s) 871
HpyCH4IV ACGT 3 cut(s) 12, 62, 551
HpyCH4V TGCA 4 cut(s) 337, 839, 892, 941
HpyF3I CTNAG 4 cut(s) 414, 673, 737, 1077
HpySE526I ACGT 3 cut(s) 12, 62, 551
Hsp92I GRCGYC 2 cut(s) 62, 1096
Hsp92II CATG 3 cut(s) 178, 500, 883
HspAI GCGC 5 cut(s) 81, 147, 308, 970, 1096
KasI GGCGCC 1 cut(s) 1095
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 7 cut(s) 7, 263, 419, 635, 797, 824, 935
LmnI GCTCC 5 cut(s) 363, 557, 625, 650, 865
Lsp1109I GCAGC 7 cut(s) 16, 70, 73, 334, 772, 823, 953
LweI GCATC 1 cut(s) 1065
MaeI CTAG 5 cut(s) 656, 705, 723, 1034, 1131
MaeII ACGT 3 cut(s) 12, 62, 551
MaeIII GTNAC 3 cut(s) 13, 130, 865
MalI GATC 7 cut(s) 9, 265, 421, 637, 799, 826, 937
MbiI CCGCTC 2 cut(s) 20, 358
MboI GATC 7 cut(s) 7, 263, 419, 635, 797, 824, 935
MboII GAAGA 6 cut(s) 87, 269, 940, 943, 1054, 1123
MflI RGATCY 1 cut(s) 935
MhlI GDGCHC 5 cut(s) 173, 220, 630, 655, 993
MlsI TGGCCA 2 cut(s) 41, 848
MluCI AATT 3 cut(s) 119, 242, 775
MluNI TGGCCA 2 cut(s) 41, 848
Mly113I GGCGCC 1 cut(s) 1096
MlyI GAGTC 1 cut(s) 1114
MmeI TCCRAC 5 cut(s) 123, 577, 996, 1022, 1088
Mox20I TGGCCA 2 cut(s) 41, 848
MroXI GAANNNNTTC 1 cut(s) 779
MscI TGGCCA 2 cut(s) 41, 848
MslI CAYNNNNRTG 1 cut(s) 1064
Msp20I TGGCCA 2 cut(s) 41, 848
MspA1I CMGCKG 2 cut(s) 77, 944
MspI CCGG 3 cut(s) 229, 458, 512
MspR9I CCNGG 3 cut(s) 459, 813, 1144
MvaI CCWGG 2 cut(s) 813, 1144
MvnI CGCG 1 cut(s) 147
NarI GGCGCC 1 cut(s) 1096
NciI CCSGG 1 cut(s) 459
NdeII GATC 7 cut(s) 7, 263, 419, 635, 797, 824, 935
NlaIII CATG 3 cut(s) 178, 500, 883
NlaIV GGNNCC 5 cut(s) 73, 172, 652, 855, 1097
NmuCI GTSAC 1 cut(s) 13
NspI RCATGY 1 cut(s) 500
NspV TTCGAA 1 cut(s) 466
PagI TCATGA 1 cut(s) 879
PaqCI CACCTGC 1 cut(s) 727
PciI ACATGT 1 cut(s) 496
PdmI GAANNNNTTC 1 cut(s) 779
PfeI GAWTC 4 cut(s) 463, 490, 576, 600
PflMI CCANNNNNTGG 1 cut(s) 638
PinAI ACCGGT 1 cut(s) 228
PkrI GCNGC 8 cut(s) 31, 34, 85, 88, 349, 787, 838, 943
PleI GAGTC 1 cut(s) 1113
PluTI GGCGCC 1 cut(s) 1099
PpsI GAGTC 1 cut(s) 1113
PscI ACATGT 1 cut(s) 496
Psp6I CCWGG 2 cut(s) 811, 1142
PspGI CCWGG 2 cut(s) 811, 1142
PspN4I GGNNCC 5 cut(s) 73, 172, 652, 855, 1097
PspPI GGNCC 3 cut(s) 71, 284, 391
PstI CTGCAG 2 cut(s) 339, 943
PstNI CAGNNNCTG 1 cut(s) 869
PsuI RGATCY 1 cut(s) 935
RsaI GTAC 5 cut(s) 446, 475, 646, 873, 957
RsaNI GTAC 5 cut(s) 445, 474, 645, 872, 956
RseI CAYNNNNRTG 1 cut(s) 1064
SatI GCNGC 8 cut(s) 30, 33, 84, 87, 348, 786, 837, 942
Sau3AI GATC 7 cut(s) 7, 263, 419, 635, 797, 824, 935
Sau96I GGNCC 3 cut(s) 71, 284, 391
SchI GAGTC 1 cut(s) 1114
ScrFI CCNGG 3 cut(s) 459, 813, 1144
SduI GDGCHC 5 cut(s) 173, 220, 630, 655, 993
SfaNI GCATC 1 cut(s) 1065
SfcI CTRYAG 2 cut(s) 335, 939
SfoI GGCGCC 1 cut(s) 1097
SfuI TTCGAA 1 cut(s) 466
SgrAI CRCCGGYG 1 cut(s) 511
SinI GGWCC 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 1064
Sse9I AATT 3 cut(s) 119, 242, 775
SsiI CCGC 7 cut(s) 18, 33, 75, 320, 356, 662, 944
SspDI GGCGCC 1 cut(s) 1095
SspI AATATT 1 cut(s) 962
SspMI CTAG 5 cut(s) 656, 705, 723, 1034, 1131
StyD4I CCNGG 3 cut(s) 457, 811, 1142
StyI CCWWGG 3 cut(s) 36, 156, 849
TaaI ACNGT 1 cut(s) 871
TaiI ACGT 3 cut(s) 15, 65, 554
TaqI TCGA 4 cut(s) 327, 450, 466, 493
TasI AATT 3 cut(s) 119, 242, 775
TatI WGTACW 2 cut(s) 644, 955
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 4 cut(s) 463, 490, 576, 600
TscAI CASTG 1 cut(s) 429
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 7 cut(s) 29, 83, 86, 347, 785, 836, 941
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 3 cut(s) 600, 702, 896
TspGWI ACGGA 1 cut(s) 276
TspRI CASTG 1 cut(s) 429
Van91I CCANNNNNTGG 1 cut(s) 638
VpaK11BI GGWCC 1 cut(s) 284
XagI CCTNNNNNAGG 1 cut(s) 746
XapI RAATTY 1 cut(s) 775
XceI RCATGY 1 cut(s) 500
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 779
XspI CTAG 5 cut(s) 656, 705, 723, 1034, 1131
ZraI GACGTC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.