Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000109

Physical Location & Seq

Genomic Coordinates Reverse (-)

76993131 .. 76994140

Gene Structure 1010 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG540600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTCTGGAACCAACGTCGTGCCTGGGGCGCAGCATCAGGCCGGGCGTTTGGAGGCGCGGATCTTGATTGTCTCTCCCCCAAAGAAGCGTAAGGTGGGTAGGCCTTTAGGTGCAAAGAATAAGCTCCGGGTGGAGGAGATTTACCCCTGGAAGTTGGGGACTGCTTTAACTAAGAAAGGTAAGAAGCGTCAATTTCATATTGCTAAGAAAGCTCTGGTCATGGAGGAAGATAAGGCAGTATGGGAGGTTCCTGTGGGGAAGGATGCTGTGGAGGAGATTGCTCCAATGGCAACAGTTAATTCTGAGAAGACCACGGTGGCGGAGGAGACCGCCGTGGGGGAGGCTACTCCCATGAGTGTGGTTACTGTGGATCCTGGGGATGCCTCATCTGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006820 GO:0007275 GO:0007568 GO:0008150 GO:0008324 GO:0008509 GO:0009987 GO:0010035 GO:0010150 GO:0010167 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015103 GO:0015112 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015386 GO:0015491 GO:0015672 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0044464 GO:0046873 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071705 GO:0071804 GO:0071805 GO:0071944 GO:0090693 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098771 GO:0099402 GO:0099516 GO:1901698 GO:1901700 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

131

Amino Acids

14.05

Weight (kDa)

9.52

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000109)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis	RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata	RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora	Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii	Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa	Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha	Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana	Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	58
AciI	CCGC	3 cut(s)	58, 320, 330
AclWI	GGATC	3 cut(s)	68, 365, 378
AfiI	CCNNNNNNNGG	2 cut(s)	133, 336
AjnI	CCWGG	3 cut(s)	22, 146, 373
AluBI	AGCT	2 cut(s)	124, 212
AluI	AGCT	2 cut(s)	124, 212
Alw26I	GTCTC	2 cut(s)	76, 320
AlwI	GGATC	3 cut(s)	68, 365, 378
AoxI	GGCC	2 cut(s)	39, 101
ApeKI	GCWGC	1 cut(s)	31
AspLEI	GCGC	2 cut(s)	31, 58
AsuC2I	CCSGG	2 cut(s)	43, 128
BamHI	GGATCC	1 cut(s)	370
BbsI	GAAGAC	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	43
BceAI	ACGGC	1 cut(s)	317
BciT130I	CCWGG	3 cut(s)	24, 148, 375
BcnI	CCSGG	2 cut(s)	43, 128
BcoDI	GTCTC	2 cut(s)	76, 320
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
Bme1390I	CCNGG	5 cut(s)	24, 43, 128, 148, 375
BmiI	GGNNCC	3 cut(s)	10, 249, 372
BmrFI	CCNGG	5 cut(s)	24, 43, 128, 148, 375
BmsI	GCATC	3 cut(s)	43, 253, 370
BpiI	GAAGAC	1 cut(s)	314
BpuMI	CCSGG	2 cut(s)	43, 128
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	5 cut(s)	23, 146, 312, 333, 374
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 336
BseBI	CCWGG	3 cut(s)	24, 148, 375
BseDI	CCNNGG	5 cut(s)	23, 146, 312, 333, 374
BseGI	GGATG	2 cut(s)	268, 385
BseLI	CCNNNNNNNGG	2 cut(s)	133, 336
BseMII	CTCAG	1 cut(s)	294
BseRI	GAGGAG	3 cut(s)	149, 287, 338
BseXI	GCAGC	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	58
BshFI	GGCC	2 cut(s)	41, 103
BsiSI	CCGG	2 cut(s)	42, 127
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	2 cut(s)	133, 336
BsmAI	GTCTC	2 cut(s)	76, 320
BsmFI	GGGAC	1 cut(s)	172
BsnI	GGCC	2 cut(s)	41, 103
Bso31I	GGTCTC	1 cut(s)	320
Bsp143I	GATC	2 cut(s)	60, 370
BspACI	CCGC	3 cut(s)	58, 320, 330
BspANI	GGCC	2 cut(s)	41, 103
BspCNI	CTCAG	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	58
BspLI	GGNNCC	3 cut(s)	10, 249, 372
BspPI	GGATC	3 cut(s)	68, 365, 378
BspTNI	GGTCTC	1 cut(s)	320
BssECI	CCNNGG	5 cut(s)	23, 146, 312, 333, 374
BssMI	GATC	2 cut(s)	60, 370
Bst2UI	CCWGG	3 cut(s)	24, 148, 375
Bst4CI	ACNGT	3 cut(s)	295, 316, 367
BstDEI	CTNAG	3 cut(s)	171, 204, 303
BstDSI	CCRYGG	2 cut(s)	312, 333
BstF5I	GGATG	2 cut(s)	268, 385
BstFNI	CGCG	1 cut(s)	58
BstHHI	GCGC	2 cut(s)	31, 58
BstKTI	GATC	2 cut(s)	63, 373
BstMAI	GTCTC	2 cut(s)	76, 320
BstMBI	GATC	2 cut(s)	60, 370
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 209, 287, 389
BstNI	CCWGG	3 cut(s)	24, 148, 375
BstSCI	CCNGG	5 cut(s)	22, 41, 126, 146, 373
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	43
BstV2I	GAAGAC	1 cut(s)	314
BstX2I	RGATCY	2 cut(s)	60, 370
BstXI	CCANNNNNNTGG	1 cut(s)	358
BstYI	RGATCY	2 cut(s)	60, 370
BsuRI	GGCC	2 cut(s)	41, 103
BtgI	CCRYGG	2 cut(s)	312, 333
BtsCI	GGATG	2 cut(s)	268, 385
CfoI	GCGC	2 cut(s)	31, 58
CseI	GACGC	1 cut(s)	176
CviAII	CATG	2 cut(s)	220, 352
CviJI	RGCY	5 cut(s)	41, 103, 124, 212, 344
CviKI_1	RGCY	5 cut(s)	41, 103, 124, 212, 344
DdeI	CTNAG	3 cut(s)	171, 204, 303
DpnI	GATC	2 cut(s)	62, 372
DpnII	GATC	2 cut(s)	60, 370
EciI	GGCGGA	1 cut(s)	335
Eco147I	AGGCCT	1 cut(s)	103
Eco31I	GGTCTC	1 cut(s)	320
EcoRII	CCWGG	3 cut(s)	22, 146, 373
FaeI	CATG	2 cut(s)	223, 355
FaiI	YATR	4 cut(s)	198, 221, 241, 353
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	2 cut(s)	219, 351
Fnu4HI	GCNGC	1 cut(s)	32
FokI	GGATG	2 cut(s)	275, 392
Fsp4HI	GCNGC	1 cut(s)	32
GlaI	GCGC	2 cut(s)	30, 57
GluI	GCNGC	1 cut(s)	32
HaeIII	GGCC	2 cut(s)	41, 103
HapII	CCGG	2 cut(s)	42, 127
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	2 cut(s)	31, 58
Hin1II	CATG	2 cut(s)	223, 355
Hin6I	GCGC	2 cut(s)	29, 56
HinP1I	GCGC	2 cut(s)	29, 56
HpaII	CCGG	2 cut(s)	42, 127
Hpy188I	TCNGA	1 cut(s)	304
Hpy188III	TCNNGA	2 cut(s)	6, 64
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	3 cut(s)	295, 316, 367
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	1 cut(s)	113
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 209, 287, 389
HpyF3I	CTNAG	3 cut(s)	171, 204, 303
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	2 cut(s)	223, 355
HspAI	GCGC	2 cut(s)	29, 56
Kzo9I	GATC	2 cut(s)	60, 370
LmnI	GCTCC	2 cut(s)	129, 286
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	3 cut(s)	43, 253, 370
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	2 cut(s)	62, 372
MboI	GATC	2 cut(s)	60, 370
MboII	GAAGA	2 cut(s)	239, 319
MflI	RGATCY	2 cut(s)	60, 370
MluCI	AATT	2 cut(s)	191, 298
MnlI	CCTC	8 cut(s)	46, 127, 217, 238, 265, 316, 334, 394
MseI	TTAA	2 cut(s)	167, 297
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	2 cut(s)	42, 127
MspR9I	CCNGG	5 cut(s)	24, 43, 128, 148, 375
MvaI	CCWGG	3 cut(s)	24, 148, 375
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	4 cut(s)	28, 209, 287, 389
NciI	CCSGG	2 cut(s)	43, 128
NdeII	GATC	2 cut(s)	60, 370
NlaIII	CATG	2 cut(s)	223, 355
NlaIV	GGNNCC	3 cut(s)	10, 249, 372
PceI	AGGCCT	1 cut(s)	103
PkrI	GCNGC	1 cut(s)	33
Psp6I	CCWGG	3 cut(s)	22, 146, 373
PspGI	CCWGG	3 cut(s)	22, 146, 373
PspN4I	GGNNCC	3 cut(s)	10, 249, 372
PsrI	GAACNNNNNNTAC	2 cut(s)	231, 263
PsuI	RGATCY	2 cut(s)	60, 370
RseI	CAYNNNNRTG	1 cut(s)	356
SaqAI	TTAA	2 cut(s)	167, 297
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	2 cut(s)	60, 370
ScrFI	CCNGG	5 cut(s)	24, 43, 128, 148, 375
SetI	ASST	7 cut(s)	18, 96, 112, 126, 181, 214, 249
SfaNI	GCATC	3 cut(s)	43, 253, 370
SmiMI	CAYNNNNRTG	1 cut(s)	356
Sse9I	AATT	2 cut(s)	191, 298
SseBI	AGGCCT	1 cut(s)	103
SsiI	CCGC	3 cut(s)	58, 320, 330
StuI	AGGCCT	1 cut(s)	103
StyD4I	CCNGG	5 cut(s)	22, 41, 126, 146, 373
TaaI	ACNGT	3 cut(s)	295, 316, 367
TaiI	ACGT	1 cut(s)	18
TasI	AATT	2 cut(s)	191, 298
Tru1I	TTAA	2 cut(s)	167, 297
Tru9I	TTAA	2 cut(s)	167, 297
TseI	GCWGC	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.