FvH4_4g09962

Zinc knuckle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000109
Physical Location & Seq
Forward (+)
12291583 .. 12294966
3384 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g09962.t1

Sequence Viewer

Length: 1152 bp
ATGGTTCTTTGGACGATCCAACTTCATGGTCTCTCTAAGGTGACCACTGTTTTGATCTCTTCTATGCCGATGAAGGTTGAGATCCTTGGACTCCCACCACGTTTGTTCACGGAAGAGGCTGCAGGGAAGGTTGGTGATCTCTTAGGGCAAGTGTTGTTTCTGGATAAGATTGGTTTGCAGCGTGGAATTCGAGCCAACGTCCGGCTCATCCATGATATATCTGATCCAGTGAGGGAGGCATTCCCTCCGATGCCCTTTGAGTTTGATTTGGGTGATTGGAAAGCGACGGTTATGCTTTCTTTCAAGTATGAAAGGTTGGTAGGGTTTTGCCGAGTTTGTGGTCTGTTGGAGCATCTCTCTCAGGGGTGTGGCGGTCCACCGGATGCAACAAAGGTTCAGCAGGTTAGTTTGGTGCCAGCGGCAGAGGTGGAGAAGGATATCCTAGGGTTTGGACGCTTTCCTGTCACCAAAAACCCTAACCCTAGCTTTCGGCAGGGTGTAAGGTTGAATAGGGTTTGCTTGAATCCTTCCCCTGCTTCGGTGAATCCCTTCTCAGGTGGAGCTCTCTCGGCTTTGAGTTCGAGTTCGTCGTCGTCGCAGCCGGGAAGTTTCTTCTCTATTCCTGGTGTTTCGGCCTCAGAGTTGGCAAGGCAGCTGGCTTCCTTCAAGTCTCCTTCTCCGACCTTTCTGCCGGCTGTGGGAATGGATTCAGTGGGTCTACCAGTCATTCAGATTCCGGCGGCAGTCTATAATCCGATTATTAGAGTACAGAGAGATGCTGACTTAACCCTCATTCCAATGGGTAAGAGAGCTCAGAGTGATGATGCTCCTATGGAGGTAATCCCTTATGAGCCTTCCTTTGTTCCTGAGATGTATTTGGCTTTTAAGGATGGGAGGATCCAAATCTCGTCGAATAAGAAGAAAATTATGGAGGTGCAGCCAGGGAAGGCAGGAGCCAACTCTAGGGGCCCTAGGAAAGCTAAGAAGAGGAGTTTTGGTGCTCATCGGGTTCTTGAGATGGGAGAGAGCTCTGGCGGCTCTACAGGGATGTTGGATCAGTCTGGGGTGGTGATAGAAGCTATAGAGGATGTTGTTGTCGCTGCCAATTCCAGTGATTTTGTGTCGGAGTCCGGGGAGATCCCTTCTGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

384

Amino Acids

41.01

Weight (kDa)

8.28

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 96 - 123 2.7e-08 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 391
AccB1I GGYRCC 1 cut(s) 412
AccI GTMKAC 1 cut(s) 718
AciI CCGC 4 cut(s) 372, 419, 740, 1035
AclWI GGATC 7 cut(s) 10, 76, 218, 892, 905, 1062, 1132
AcsI RAATTY 1 cut(s) 186
AfaI GTAC 1 cut(s) 768
AfiI CCNNNNNNNGG 5 cut(s) 201, 538, 554, 698, 963
AgsI TTSAA 4 cut(s) 304, 508, 523, 667
AjnI CCWGG 2 cut(s) 622, 940
AluBI AGCT 7 cut(s) 486, 563, 655, 812, 980, 1029, 1079
AluI AGCT 7 cut(s) 486, 563, 655, 812, 980, 1029, 1079
Alw21I GWGCWC 4 cut(s) 565, 814, 1003, 1031
Alw26I GTCTC 2 cut(s) 35, 675
AlwI GGATC 7 cut(s) 10, 76, 218, 892, 905, 1062, 1132
AoxI GGCC 2 cut(s) 633, 967
ApaI GGGCCC 1 cut(s) 971
ApeKI GCWGC 6 cut(s) 119, 178, 598, 652, 937, 1100
ApoI RAATTY 1 cut(s) 186
ArsI GACNNNNNNTTYG 2 cut(s) 34, 66
Asp700I GAANNNNTTC 2 cut(s) 548, 706
AspA2I CCTAGG 2 cut(s) 442, 971
AspS9I GGNCC 3 cut(s) 374, 967, 968
AsuC2I CCSGG 2 cut(s) 603, 1132
AsuHPI GGTGA 6 cut(s) 52, 146, 284, 457, 553, 1081
AvaII GGWCC 1 cut(s) 374
AvrII CCTAGG 2 cut(s) 442, 971
BaeGI GKGCMC 1 cut(s) 971
BamHI GGATCC 1 cut(s) 897
BanI GGYRCC 1 cut(s) 412
BanII GRGCYC 4 cut(s) 565, 814, 971, 1031
Bbv12I GWGCWC 4 cut(s) 565, 814, 1003, 1031
BbvI GCAGC 6 cut(s) 106, 190, 610, 664, 949, 1087
BccI CCATC 2 cut(s) 884, 1012
BcgI CGANNNNNNTGC 4 cut(s) 274, 308, 670, 704
BciT130I CCWGG 2 cut(s) 624, 942
BcnI CCSGG 2 cut(s) 603, 1132
BcoDI GTCTC 2 cut(s) 35, 675
BfaI CTAG 4 cut(s) 443, 483, 963, 972
BfmI CTRYAG 3 cut(s) 120, 1041, 1080
BfuAI ACCTGC 1 cut(s) 391
BisI GCNGC 9 cut(s) 120, 179, 420, 599, 653, 741, 938, 1036, 1101
BlnI CCTAGG 2 cut(s) 442, 971
BlsI GCNGC 9 cut(s) 121, 180, 421, 600, 654, 742, 939, 1037, 1102
Bme1390I CCNGG 4 cut(s) 603, 624, 942, 1132
Bme18I GGWCC 1 cut(s) 374
BmgT120I GGNCC 3 cut(s) 374, 967, 968
BmiI GGNNCC 5 cut(s) 414, 899, 955, 968, 969
BmrFI CCNGG 4 cut(s) 603, 624, 942, 1132
BmsI GCATC 5 cut(s) 240, 361, 373, 766, 814
BplI GAGNNNNNCTC 2 cut(s) 341, 373
BpuEI CTTGAG 1 cut(s) 1034
BpuMI CCSGG 2 cut(s) 603, 1132
BsaBI GATNNNNATC 1 cut(s) 902
BsaI GGTCTC 1 cut(s) 35
BsaJI CCNNGG 5 cut(s) 85, 442, 941, 971, 1131
BsaWI WCCGGW 1 cut(s) 379
BsaXI ACNNNNNCTCC 2 cut(s) 982, 1012
Bsc4I CCNNNNNNNGG 5 cut(s) 201, 538, 554, 698, 963
Bse118I RCCGGY 1 cut(s) 691
Bse1I ACTGG 3 cut(s) 227, 722, 1110
Bse8I GATNNNNATC 1 cut(s) 902
BseBI CCWGG 2 cut(s) 624, 942
BseDI CCNNGG 5 cut(s) 85, 442, 941, 971, 1131
BseGI GGATG 5 cut(s) 207, 388, 895, 1053, 1093
BseJI GATNNNNATC 1 cut(s) 902
BseLI CCNNNNNNNGG 5 cut(s) 201, 538, 554, 698, 963
BseMII CTCAG 5 cut(s) 374, 567, 651, 827, 858
BseNI ACTGG 3 cut(s) 227, 722, 1110
BseRI GAGGAG 1 cut(s) 1003
BseSI GKGCMC 1 cut(s) 971
BseXI GCAGC 6 cut(s) 106, 190, 610, 664, 949, 1087
BsgI GTGCAG 1 cut(s) 956
BshFI GGCC 2 cut(s) 635, 969
BshNI GGYRCC 1 cut(s) 412
BsiHKAI GWGCWC 4 cut(s) 565, 814, 1003, 1031
BsiSI CCGG 6 cut(s) 202, 380, 602, 692, 737, 1131
BslI CCNNNNNNNGG 5 cut(s) 201, 538, 554, 698, 963
BsmAI GTCTC 2 cut(s) 35, 675
BsmI GAATGC 1 cut(s) 239
BsnI GGCC 2 cut(s) 635, 969
Bso31I GGTCTC 1 cut(s) 35
Bsp120I GGGCCC 1 cut(s) 967
Bsp1286I GDGCHC 5 cut(s) 565, 814, 971, 1003, 1031
Bsp143I GATC 8 cut(s) 15, 54, 81, 136, 223, 897, 1054, 1137
BspACI CCGC 4 cut(s) 372, 419, 740, 1035
BspANI GGCC 2 cut(s) 635, 969
BspCNI CTCAG 5 cut(s) 373, 566, 650, 826, 859
BspLI GGNNCC 5 cut(s) 414, 899, 955, 968, 969
BspMAI CTGCAG 1 cut(s) 124
BspMI ACCTGC 1 cut(s) 391
BspPI GGATC 7 cut(s) 10, 76, 218, 892, 905, 1062, 1132
BspT107I GGYRCC 1 cut(s) 412
BspTNI GGTCTC 1 cut(s) 35
BsrFI RCCGGY 1 cut(s) 691
BsrI ACTGG 3 cut(s) 227, 722, 1110
BssAI RCCGGY 1 cut(s) 691
BssECI CCNNGG 5 cut(s) 85, 442, 941, 971, 1131
BssMI GATC 8 cut(s) 15, 54, 81, 136, 223, 897, 1054, 1137
BssT1I CCWWGG 3 cut(s) 85, 442, 971
Bst2UI CCWGG 2 cut(s) 624, 942
Bst4CI ACNGT 2 cut(s) 49, 289
Bst6I CTCTTC 3 cut(s) 64, 108, 980
BstC8I GCNNGC 3 cut(s) 417, 657, 693
BstDEI CTNAG 8 cut(s) 36, 142, 360, 553, 637, 813, 867, 981
BstEII GGTNACC 1 cut(s) 40
BstF5I GGATG 5 cut(s) 207, 388, 895, 1053, 1093
BstKTI GATC 8 cut(s) 18, 57, 84, 139, 226, 900, 1057, 1140
BstMAI GTCTC 2 cut(s) 35, 675
BstMBI GATC 8 cut(s) 15, 54, 81, 136, 223, 897, 1054, 1137
BstMWI GCNNNNNNNGC 2 cut(s) 569, 1035
BstNI CCWGG 2 cut(s) 624, 942
BstPI GGTNACC 1 cut(s) 40
BstSCI CCNGG 4 cut(s) 601, 622, 940, 1130
BstSFI CTRYAG 3 cut(s) 120, 1041, 1080
BstSLI GKGCMC 1 cut(s) 971
BstV1I GCAGC 6 cut(s) 106, 190, 610, 664, 949, 1087
BstX2I RGATCY 3 cut(s) 81, 897, 1137
BstXI CCANNNNNNTGG 1 cut(s) 26
BstYI RGATCY 3 cut(s) 81, 897, 1137
BsuRI GGCC 2 cut(s) 635, 969
BtsCI GGATG 5 cut(s) 207, 388, 895, 1053, 1093
BtsIMutI CAGTG 4 cut(s) 45, 234, 717, 1117
BveI ACCTGC 1 cut(s) 391
Cac8I GCNNGC 3 cut(s) 417, 657, 693
Cfr10I RCCGGY 1 cut(s) 691
Cfr13I GGNCC 3 cut(s) 374, 967, 968
CseI GACGC 1 cut(s) 462
Csp6I GTAC 1 cut(s) 767
CspCI CAANNNNNGTGG 2 cut(s) 84, 119
CviAII CATG 2 cut(s) 26, 212
CviQI GTAC 1 cut(s) 767
DdeI CTNAG 8 cut(s) 36, 142, 360, 553, 637, 813, 867, 981
DpnI GATC 8 cut(s) 17, 56, 83, 138, 225, 899, 1056, 1139
DpnII GATC 8 cut(s) 15, 54, 81, 136, 223, 897, 1054, 1137
Eam1104I CTCTTC 3 cut(s) 64, 108, 980
EarI CTCTTC 3 cut(s) 64, 108, 980
Ecl136II GAGCTC 3 cut(s) 563, 812, 1029
Eco130I CCWWGG 3 cut(s) 85, 442, 971
Eco24I GRGCYC 4 cut(s) 565, 814, 971, 1031
Eco31I GGTCTC 1 cut(s) 35
Eco32I GATATC 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 374
Eco53kI GAGCTC 3 cut(s) 563, 812, 1029
Eco91I GGTNACC 1 cut(s) 40
EcoICRI GAGCTC 3 cut(s) 563, 812, 1029
EcoO109I RGGNCCY 2 cut(s) 967, 968
EcoO65I GGTNACC 1 cut(s) 40
EcoRI GAATTC 1 cut(s) 186
EcoRII CCWGG 2 cut(s) 622, 940
EcoRV GATATC 1 cut(s) 439
EcoT14I CCWWGG 3 cut(s) 85, 442, 971
EcoT38I GRGCYC 4 cut(s) 565, 814, 971, 1031
ErhI CCWWGG 3 cut(s) 85, 442, 971
FaeI CATG 2 cut(s) 29, 215
FatI CATG 2 cut(s) 25, 211
FblI GTMKAC 1 cut(s) 718
Fnu4HI GCNGC 9 cut(s) 120, 179, 420, 599, 653, 741, 938, 1036, 1101
FokI GGATG 5 cut(s) 194, 395, 902, 1060, 1100
FriOI GRGCYC 4 cut(s) 565, 814, 971, 1031
Fsp4HI GCNGC 9 cut(s) 120, 179, 420, 599, 653, 741, 938, 1036, 1101
FspBI CTAG 4 cut(s) 443, 483, 963, 972
GluI GCNGC 9 cut(s) 120, 179, 420, 599, 653, 741, 938, 1036, 1101
HaeIII GGCC 2 cut(s) 635, 969
HapII CCGG 6 cut(s) 202, 380, 602, 692, 737, 1131
HgaI GACGC 1 cut(s) 462
Hin1II CATG 2 cut(s) 29, 215
HinfI GANTC 6 cut(s) 90, 523, 544, 707, 733, 1127
HpaII CCGG 6 cut(s) 202, 380, 602, 692, 737, 1131
HphI GGTGA 6 cut(s) 52, 146, 284, 457, 553, 1081
Hpy166II GTNNAC 3 cut(s) 108, 377, 719
Hpy188I TCNGA 8 cut(s) 223, 249, 640, 681, 732, 756, 816, 1126
Hpy188III TCNNGA 3 cut(s) 161, 866, 1013
Hpy8I GTNNAC 3 cut(s) 108, 377, 719
Hpy99I CGWCG 5 cut(s) 289, 592, 595, 598, 913
HpyCH4III ACNGT 2 cut(s) 49, 289
HpyCH4IV ACGT 2 cut(s) 100, 198
HpyCH4V TGCA 4 cut(s) 122, 178, 386, 937
HpyF10VI GCNNNNNNNGC 2 cut(s) 569, 1035
HpyF3I CTNAG 8 cut(s) 36, 142, 360, 553, 637, 813, 867, 981
HpySE526I ACGT 2 cut(s) 100, 198
Hsp92II CATG 2 cut(s) 29, 215
KroI GCCGGC 1 cut(s) 691
KroNI GCCGGC 1 cut(s) 693
Kzo9I GATC 8 cut(s) 15, 54, 81, 136, 223, 897, 1054, 1137
LmnI GCTCC 4 cut(s) 349, 560, 832, 953
Lsp1109I GCAGC 6 cut(s) 106, 190, 610, 664, 949, 1087
LweI GCATC 5 cut(s) 240, 361, 373, 766, 814
MaeI CTAG 4 cut(s) 443, 483, 963, 972
MaeII ACGT 2 cut(s) 100, 198
MaeIII GTNAC 2 cut(s) 40, 463
MalI GATC 8 cut(s) 17, 56, 83, 138, 225, 899, 1056, 1139
MboI GATC 8 cut(s) 15, 54, 81, 136, 223, 897, 1054, 1137
MboII GAAGA 5 cut(s) 51, 125, 604, 931, 997
MflI RGATCY 3 cut(s) 81, 897, 1137
MhlI GDGCHC 5 cut(s) 565, 814, 971, 1003, 1031
MluCI AATT 3 cut(s) 186, 924, 1105
MlyI GAGTC 2 cut(s) 84, 1136
MmeI TCCRAC 5 cut(s) 43, 327, 704, 1032, 1104
MroNI GCCGGC 1 cut(s) 691
MroXI GAANNNNTTC 2 cut(s) 548, 706
MseI TTAA 2 cut(s) 785, 885
MslI CAYNNNNRTG 1 cut(s) 797
MspA1I CMGCKG 2 cut(s) 419, 655
MspI CCGG 6 cut(s) 202, 380, 602, 692, 737, 1131
MspR9I CCNGG 4 cut(s) 603, 624, 942, 1132
Mva1269I GAATGC 1 cut(s) 239
MvaI CCWGG 2 cut(s) 624, 942
MwoI GCNNNNNNNGC 2 cut(s) 569, 1035
NaeI GCCGGC 1 cut(s) 693
NciI CCSGG 2 cut(s) 603, 1132
NdeII GATC 8 cut(s) 15, 54, 81, 136, 223, 897, 1054, 1137
NgoMIV GCCGGC 1 cut(s) 691
NlaIII CATG 2 cut(s) 29, 215
NlaIV GGNNCC 5 cut(s) 414, 899, 955, 968, 969
NmeAIII GCCGAG 2 cut(s) 356, 548
NmuCI GTSAC 2 cut(s) 40, 463
PcsI WCGNNNNNNNCGW 1 cut(s) 587
PctI GAATGC 1 cut(s) 239
PdiI GCCGGC 1 cut(s) 693
PdmI GAANNNNTTC 2 cut(s) 548, 706
PfeI GAWTC 4 cut(s) 523, 544, 707, 733
PkrI GCNGC 9 cut(s) 121, 180, 421, 600, 654, 742, 939, 1037, 1102
PleI GAGTC 2 cut(s) 84, 1135
PpsI GAGTC 2 cut(s) 84, 1135
Psp124BI GAGCTC 3 cut(s) 565, 814, 1031
Psp6I CCWGG 2 cut(s) 622, 940
PspEI GGTNACC 1 cut(s) 40
PspGI CCWGG 2 cut(s) 622, 940
PspN4I GGNNCC 5 cut(s) 414, 899, 955, 968, 969
PspOMI GGGCCC 1 cut(s) 967
PspPI GGNCC 3 cut(s) 374, 967, 968
PstI CTGCAG 1 cut(s) 124
PsuI RGATCY 3 cut(s) 81, 897, 1137
PvuII CAGCTG 1 cut(s) 655
RsaI GTAC 1 cut(s) 768
RsaNI GTAC 1 cut(s) 767
RseI CAYNNNNRTG 1 cut(s) 797
SacI GAGCTC 3 cut(s) 565, 814, 1031
SaqAI TTAA 2 cut(s) 785, 885
SatI GCNGC 9 cut(s) 120, 179, 420, 599, 653, 741, 938, 1036, 1101
Sau3AI GATC 8 cut(s) 15, 54, 81, 136, 223, 897, 1054, 1137
Sau96I GGNCC 3 cut(s) 374, 967, 968
SchI GAGTC 2 cut(s) 84, 1136
ScrFI CCNGG 4 cut(s) 603, 624, 942, 1132
SduI GDGCHC 5 cut(s) 565, 814, 971, 1003, 1031
SfaNI GCATC 5 cut(s) 240, 361, 373, 766, 814
SfcI CTRYAG 3 cut(s) 120, 1041, 1080
SinI GGWCC 1 cut(s) 374
SmiMI CAYNNNNRTG 1 cut(s) 797
SmlI CTYRAG 1 cut(s) 1013
SmoI CTYRAG 1 cut(s) 1013
Sse9I AATT 3 cut(s) 186, 924, 1105
SsiI CCGC 4 cut(s) 372, 419, 740, 1035
SspMI CTAG 4 cut(s) 443, 483, 963, 972
SstI GAGCTC 3 cut(s) 565, 814, 1031
StyD4I CCNGG 4 cut(s) 601, 622, 940, 1130
StyI CCWWGG 3 cut(s) 85, 442, 971
TaaI ACNGT 2 cut(s) 49, 289
TaiI ACGT 2 cut(s) 103, 201
TaqI TCGA 3 cut(s) 190, 581, 911
TasI AATT 3 cut(s) 186, 924, 1105
TatI WGTACW 1 cut(s) 766
TauI GCSGC 3 cut(s) 422, 743, 1038
TfiI GAWTC 4 cut(s) 523, 544, 707, 733
Tru1I TTAA 2 cut(s) 785, 885
Tru9I TTAA 2 cut(s) 785, 885
TscAI CASTG 4 cut(s) 52, 234, 717, 1117
TseFI GTSAC 2 cut(s) 40, 463
TseI GCWGC 6 cut(s) 119, 178, 598, 652, 937, 1100
Tsp45I GTSAC 2 cut(s) 40, 463
TspDTI ATGAA 3 cut(s) 14, 86, 324
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 4 cut(s) 52, 234, 717, 1117
VpaK11BI GGWCC 1 cut(s) 374
XapI RAATTY 1 cut(s) 186
XmaJI CCTAGG 2 cut(s) 442, 971
XmiI GTMKAC 1 cut(s) 718
XmnI GAANNNNTTC 2 cut(s) 548, 706
XspI CTAG 4 cut(s) 443, 483, 963, 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.