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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 475 |
| AccB1I | GGYRCC | 2 cut(s) | 514, 535 |
| AccII | CGCG | 1 cut(s) | 263 |
| AciI | CCGC | 5 cut(s) | 96, 263, 377, 491, 533 |
| AclWI | GGATC | 3 cut(s) | 144, 157, 575 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 253, 361, 362, 511 |
| AgsI | TTSAA | 2 cut(s) | 242, 406 |
| AjnI | CCWGG | 1 cut(s) | 562 |
| AluBI | AGCT | 1 cut(s) | 509 |
| AluI | AGCT | 1 cut(s) | 509 |
| Alw21I | GWGCWC | 1 cut(s) | 354 |
| AlwI | GGATC | 3 cut(s) | 144, 157, 575 |
| AoxI | GGCC | 3 cut(s) | 175, 374, 501 |
| ApeKI | GCWGC | 2 cut(s) | 92, 496 |
| AspA2I | CCTAGG | 1 cut(s) | 425 |
| AspLEI | GCGC | 2 cut(s) | 92, 460 |
| AspS9I | GGNCC | 2 cut(s) | 374, 502 |
| AsuHPI | GGTGA | 1 cut(s) | 140 |
| AvrII | CCTAGG | 1 cut(s) | 425 |
| BaeGI | GKGCMC | 2 cut(s) | 519, 540 |
| BamHI | GGATCC | 1 cut(s) | 149 |
| BanI | GGYRCC | 2 cut(s) | 514, 535 |
| BbsI | GAAGAC | 1 cut(s) | 111 |
| Bbv12I | GWGCWC | 1 cut(s) | 354 |
| BbvI | GCAGC | 2 cut(s) | 79, 483 |
| BccI | CCATC | 1 cut(s) | 216 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 207, 241 |
| BciT130I | CCWGG | 1 cut(s) | 564 |
| BfaI | CTAG | 1 cut(s) | 426 |
| BfmI | CTRYAG | 1 cut(s) | 230 |
| BfoI | RGCGCY | 1 cut(s) | 93 |
| BisI | GCNGC | 4 cut(s) | 93, 96, 377, 497 |
| BlnI | CCTAGG | 1 cut(s) | 425 |
| BlsI | GCNGC | 4 cut(s) | 94, 97, 378, 498 |
| Bme1390I | CCNGG | 1 cut(s) | 564 |
| BmgT120I | GGNCC | 2 cut(s) | 374, 502 |
| BmiI | GGNNCC | 3 cut(s) | 151, 516, 537 |
| BmrFI | CCNGG | 1 cut(s) | 564 |
| BmrI | ACTGGG | 1 cut(s) | 593 |
| BmsI | GCATC | 1 cut(s) | 309 |
| BmuI | ACTGGG | 1 cut(s) | 593 |
| BpiI | GAAGAC | 1 cut(s) | 111 |
| BpmI | CTGGAG | 1 cut(s) | 368 |
| Bpu10I | CCTNAGC | 1 cut(s) | 510 |
| BsaJI | CCNNGG | 4 cut(s) | 14, 172, 425, 563 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 253, 361, 362, 511 |
| Bse1I | ACTGG | 3 cut(s) | 461, 475, 599 |
| BseBI | CCWGG | 1 cut(s) | 564 |
| BseDI | CCNNGG | 4 cut(s) | 14, 172, 425, 563 |
| BseGI | GGATG | 1 cut(s) | 10 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 253, 361, 362, 511 |
| BseMII | CTCAG | 1 cut(s) | 524 |
| BseNI | ACTGG | 3 cut(s) | 461, 475, 599 |
| BseSI | GKGCMC | 2 cut(s) | 519, 540 |
| BseXI | GCAGC | 2 cut(s) | 79, 483 |
| BsgI | GTGCAG | 1 cut(s) | 390 |
| Bsh1236I | CGCG | 1 cut(s) | 263 |
| BshFI | GGCC | 3 cut(s) | 177, 376, 503 |
| BshNI | GGYRCC | 2 cut(s) | 514, 535 |
| BsiHKAI | GWGCWC | 1 cut(s) | 354 |
| BsiSI | CCGG | 1 cut(s) | 380 |
| BslFI | GGGAC | 1 cut(s) | 269 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 253, 361, 362, 511 |
| BsmFI | GGGAC | 1 cut(s) | 269 |
| BsnI | GGCC | 3 cut(s) | 177, 376, 503 |
| Bsp1286I | GDGCHC | 3 cut(s) | 354, 519, 540 |
| Bsp143I | GATC | 3 cut(s) | 149, 181, 567 |
| Bsp19I | CCATGG | 2 cut(s) | 14, 172 |
| BspACI | CCGC | 5 cut(s) | 96, 263, 377, 491, 533 |
| BspANI | GGCC | 3 cut(s) | 177, 376, 503 |
| BspCNI | CTCAG | 1 cut(s) | 523 |
| BspFNI | CGCG | 1 cut(s) | 263 |
| BspLI | GGNNCC | 3 cut(s) | 151, 516, 537 |
| BspPI | GGATC | 3 cut(s) | 144, 157, 575 |
| BspQI | GCTCTTC | 1 cut(s) | 594 |
| BspT107I | GGYRCC | 2 cut(s) | 514, 535 |
| BsrI | ACTGG | 3 cut(s) | 461, 475, 599 |
| BssECI | CCNNGG | 4 cut(s) | 14, 172, 425, 563 |
| BssMI | GATC | 3 cut(s) | 149, 181, 567 |
| BssT1I | CCWWGG | 3 cut(s) | 14, 172, 425 |
| Bst2UI | CCWGG | 1 cut(s) | 564 |
| Bst4CI | ACNGT | 3 cut(s) | 7, 234, 574 |
| Bst6I | CTCTTC | 2 cut(s) | 384, 594 |
| BstC8I | GCNNGC | 4 cut(s) | 45, 314, 344, 501 |
| BstDEI | CTNAG | 1 cut(s) | 510 |
| BstDSI | CCRYGG | 2 cut(s) | 14, 172 |
| BstF5I | GGATG | 1 cut(s) | 10 |
| BstFNI | CGCG | 1 cut(s) | 263 |
| BstH2I | RGCGCY | 1 cut(s) | 93 |
| BstHHI | GCGC | 2 cut(s) | 92, 460 |
| BstKTI | GATC | 3 cut(s) | 152, 184, 570 |
| BstMBI | GATC | 3 cut(s) | 149, 181, 567 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 44, 297 |
| BstNI | CCWGG | 1 cut(s) | 564 |
| BstNSI | RCATGY | 1 cut(s) | 346 |
| BstSCI | CCNGG | 1 cut(s) | 562 |
| BstSFI | CTRYAG | 1 cut(s) | 230 |
| BstSLI | GKGCMC | 2 cut(s) | 519, 540 |
| BstUI | CGCG | 1 cut(s) | 263 |
| BstV1I | GCAGC | 2 cut(s) | 79, 483 |
| BstV2I | GAAGAC | 1 cut(s) | 111 |
| BstX2I | RGATCY | 1 cut(s) | 149 |
| BstYI | RGATCY | 1 cut(s) | 149 |
| BsuRI | GGCC | 3 cut(s) | 177, 376, 503 |
| BtgI | CCRYGG | 2 cut(s) | 14, 172 |
| BtsCI | GGATG | 1 cut(s) | 10 |
| BtsI | GCAGTG | 1 cut(s) | 292 |
| BtsIMutI | CAGTG | 1 cut(s) | 292 |
| Cac8I | GCNNGC | 4 cut(s) | 45, 314, 344, 501 |
| CfoI | GCGC | 2 cut(s) | 92, 460 |
| Cfr13I | GGNCC | 2 cut(s) | 374, 502 |
| CviAII | CATG | 5 cut(s) | 15, 40, 173, 343, 529 |
| DdeI | CTNAG | 1 cut(s) | 510 |
| DpnI | GATC | 3 cut(s) | 151, 183, 569 |
| DpnII | GATC | 3 cut(s) | 149, 181, 567 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 475 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 475 |
| Eam1104I | CTCTTC | 2 cut(s) | 384, 594 |
| EarI | CTCTTC | 2 cut(s) | 384, 594 |
| Eco130I | CCWWGG | 3 cut(s) | 14, 172, 425 |
| EcoRII | CCWGG | 1 cut(s) | 562 |
| EcoT14I | CCWWGG | 3 cut(s) | 14, 172, 425 |
| ErhI | CCWWGG | 3 cut(s) | 14, 172, 425 |
| FaeI | CATG | 5 cut(s) | 18, 43, 176, 346, 532 |
| FaqI | GGGAC | 1 cut(s) | 269 |
| FatI | CATG | 5 cut(s) | 14, 39, 172, 342, 528 |
| FauI | CCCGC | 1 cut(s) | 484 |
| Fnu4HI | GCNGC | 4 cut(s) | 93, 96, 377, 497 |
| Fsp4HI | GCNGC | 4 cut(s) | 93, 96, 377, 497 |
| FspBI | CTAG | 1 cut(s) | 426 |
| GlaI | GCGC | 2 cut(s) | 91, 459 |
| GluI | GCNGC | 4 cut(s) | 93, 96, 377, 497 |
| GsuI | CTGGAG | 1 cut(s) | 368 |
| HaeII | RGCGCY | 1 cut(s) | 93 |
| HaeIII | GGCC | 3 cut(s) | 177, 376, 503 |
| HapII | CCGG | 1 cut(s) | 380 |
| HhaI | GCGC | 2 cut(s) | 92, 460 |
| Hin1II | CATG | 5 cut(s) | 18, 43, 176, 346, 532 |
| Hin6I | GCGC | 2 cut(s) | 90, 458 |
| HinP1I | GCGC | 2 cut(s) | 90, 458 |
| HincII | GTYRAC | 2 cut(s) | 21, 271 |
| HindII | GTYRAC | 2 cut(s) | 21, 271 |
| HinfI | GANTC | 2 cut(s) | 238, 559 |
| HpaII | CCGG | 1 cut(s) | 380 |
| HphI | GGTGA | 1 cut(s) | 140 |
| Hpy166II | GTNNAC | 2 cut(s) | 21, 271 |
| Hpy188I | TCNGA | 4 cut(s) | 154, 213, 468, 605 |
| Hpy188III | TCNNGA | 1 cut(s) | 58 |
| Hpy8I | GTNNAC | 2 cut(s) | 21, 271 |
| HpyAV | CCTTC | 2 cut(s) | 55, 149 |
| HpyCH4III | ACNGT | 3 cut(s) | 7, 234, 574 |
| HpyCH4IV | ACGT | 1 cut(s) | 267 |
| HpyCH4V | TGCA | 1 cut(s) | 371 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 44, 297 |
| HpyF3I | CTNAG | 1 cut(s) | 510 |
| HpySE526I | ACGT | 1 cut(s) | 267 |
| Hsp92II | CATG | 5 cut(s) | 18, 43, 176, 346, 532 |
| HspAI | GCGC | 2 cut(s) | 90, 458 |
| Kzo9I | GATC | 3 cut(s) | 149, 181, 567 |
| LguI | GCTCTTC | 1 cut(s) | 594 |
| LmnI | GCTCC | 2 cut(s) | 282, 349 |
| Lsp1109I | GCAGC | 2 cut(s) | 79, 483 |
| LweI | GCATC | 1 cut(s) | 309 |
| MaeI | CTAG | 1 cut(s) | 426 |
| MaeII | ACGT | 1 cut(s) | 267 |
| MaeIII | GTNAC | 1 cut(s) | 128 |
| MalI | GATC | 3 cut(s) | 151, 183, 569 |
| MboI | GATC | 3 cut(s) | 149, 181, 567 |
| MboII | GAAGA | 4 cut(s) | 111, 149, 401, 581 |
| MflI | RGATCY | 1 cut(s) | 149 |
| MhlI | GDGCHC | 3 cut(s) | 354, 519, 540 |
| MluCI | AATT | 2 cut(s) | 197, 242 |
| MnlI | CCTC | 6 cut(s) | 39, 188, 376, 385, 490, 571 |
| MslI | CAYNNNNRTG | 1 cut(s) | 533 |
| MspI | CCGG | 1 cut(s) | 380 |
| MspR9I | CCNGG | 1 cut(s) | 564 |
| MvaI | CCWGG | 1 cut(s) | 564 |
| MvnI | CGCG | 1 cut(s) | 263 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 44, 297 |
| NcoI | CCATGG | 2 cut(s) | 14, 172 |
| NdeII | GATC | 3 cut(s) | 149, 181, 567 |
| NlaIII | CATG | 5 cut(s) | 18, 43, 176, 346, 532 |
| NlaIV | GGNNCC | 3 cut(s) | 151, 516, 537 |
| NmuCI | GTSAC | 1 cut(s) | 128 |
| NspI | RCATGY | 1 cut(s) | 346 |
| PaeI | GCATGC | 1 cut(s) | 346 |
| PciSI | GCTCTTC | 1 cut(s) | 594 |
| PfeI | GAWTC | 2 cut(s) | 238, 559 |
| PkrI | GCNGC | 4 cut(s) | 94, 97, 378, 498 |
| Psp6I | CCWGG | 1 cut(s) | 562 |
| PspGI | CCWGG | 1 cut(s) | 562 |
| PspN4I | GGNNCC | 3 cut(s) | 151, 516, 537 |
| PspPI | GGNCC | 2 cut(s) | 374, 502 |
| PsuI | RGATCY | 1 cut(s) | 149 |
| RseI | CAYNNNNRTG | 1 cut(s) | 533 |
| SapI | GCTCTTC | 1 cut(s) | 594 |
| SatI | GCNGC | 4 cut(s) | 93, 96, 377, 497 |
| Sau3AI | GATC | 3 cut(s) | 149, 181, 567 |
| Sau96I | GGNCC | 2 cut(s) | 374, 502 |
| ScrFI | CCNGG | 1 cut(s) | 564 |
| SduI | GDGCHC | 3 cut(s) | 354, 519, 540 |
| SetI | ASST | 9 cut(s) | 160, 270, 279, 387, 438, 511, 516, 548, 554 |
| SfaNI | GCATC | 1 cut(s) | 309 |
| SfcI | CTRYAG | 1 cut(s) | 230 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 533 |
| SphI | GCATGC | 1 cut(s) | 346 |
| Sse9I | AATT | 2 cut(s) | 197, 242 |
| SsiI | CCGC | 5 cut(s) | 96, 263, 377, 491, 533 |
| SspMI | CTAG | 1 cut(s) | 426 |
| StyD4I | CCNGG | 1 cut(s) | 562 |
| StyI | CCWWGG | 3 cut(s) | 14, 172, 425 |
| TaaI | ACNGT | 3 cut(s) | 7, 234, 574 |
| TaiI | ACGT | 1 cut(s) | 270 |
| TaqI | TCGA | 3 cut(s) | 57, 180, 557 |
| TasI | AATT | 2 cut(s) | 197, 242 |
| TauI | GCSGC | 2 cut(s) | 98, 379 |
| TfiI | GAWTC | 2 cut(s) | 238, 559 |
| TscAI | CASTG | 1 cut(s) | 292 |
| TseFI | GTSAC | 1 cut(s) | 128 |
| TseI | GCWGC | 2 cut(s) | 92, 496 |
| Tsp45I | GTSAC | 1 cut(s) | 128 |
| TspDTI | ATGAA | 1 cut(s) | 517 |
| TspGWI | ACGGA | 1 cut(s) | 295 |
| TspRI | CASTG | 1 cut(s) | 292 |
| XceI | RCATGY | 1 cut(s) | 346 |
| XmaJI | CCTAGG | 1 cut(s) | 425 |
| XspI | CTAG | 1 cut(s) | 426 |