Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000109

Physical Location & Seq

Genomic Coordinates Forward (+)

49539450 .. 49540127

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025967

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGATGAGAGCGGGAACTCGCTTTTGGTGATCCGGGCCGTGATTACGGTTCGGTTTATAGAGAGAGTGCCGTTTATGCTGGTGGAGTCGTCGGAGCTTCTGAAGCAGCTTGAGACCTTTGGCTTTAAGGCTCTCTTTTTTGTCTCATGGTGCAAGCCCGAGCTGGGTTTTTGGTGTAGGGAATTGCTCGGGTGTAGGACAAGTTCCATTTATGCTCAAGCCATCCTCTTTGCTGGGTTCAATGCCAAGGCAGTAGTCACGAGGTCCAAACAGCTAGCTCCTGTTGAGCTGGATTTTGAGCCACTTTTGGATCTCCCCCATAAGGAGGGAACTTTGTTGGTGTCTCCCCCGAAGAAGAGGAAGGTGGGCAGGCCGACTGGGAGTTGCAACAAACCCAAGCTAGAAGATGTGAAGCCTTGGAAGGTGATCAAAGCTAGCTCAGGGTCTGACAAGCCACCTCGGAAGAATGGGGTGCCCAAACCTCTAGTGGGTGAGGTGAAGCGAGCTTTGGAGCTTATTGATGATGATCTCCCGGATAAGGAAACCATGGATACTAAAGGAAAGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016422 GO:0016556 GO:0016604 GO:0016607 GO:0016740 GO:0016741 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0034708 GO:0036396 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045293 GO:0046483 GO:0070013 GO:0071704 GO:0080009 GO:0090304 GO:0140098 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MT-A70

Protein Analysis

190

Amino Acids

21.08

Weight (kDa)

9.19

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000109)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis	RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata	RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora	Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii	Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa	Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha	Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana	Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	472
AccBSI	CCGCTC	1 cut(s)	12
AciI	CCGC	1 cut(s)	12
AclWI	GGATC	2 cut(s)	25, 318
AcuI	CTGAAG	1 cut(s)	122
AfiI	CCNNNNNNNGG	5 cut(s)	164, 322, 325, 488, 538
AgsI	TTSAA	1 cut(s)	241
AjuI	GAANNNNNNNTTGG	4 cut(s)	8, 40, 491, 523
Alw26I	GTCTC	3 cut(s)	107, 148, 348
AlwI	GGATC	2 cut(s)	25, 318
AlwNI	CAGNNNCTG	1 cut(s)	446
Ama87I	CYCGRG	2 cut(s)	158, 188
AoxI	GGCC	2 cut(s)	36, 371
ApeKI	GCWGC	1 cut(s)	106
AspS9I	GGNCC	2 cut(s)	36, 264
AsuC2I	CCSGG	2 cut(s)	35, 533
AsuHPI	GGTGA	4 cut(s)	40, 436, 503, 508
AsuNHI	GCTAGC	2 cut(s)	274, 434
AvaI	CYCGRG	2 cut(s)	158, 188
AvaII	GGWCC	1 cut(s)	264
BaeGI	GKGCMC	1 cut(s)	477
BanI	GGYRCC	1 cut(s)	472
BauI	CACGAG	1 cut(s)	259
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	2 cut(s)	23, 55
BciVI	GTATCC	1 cut(s)	544
BclI	TGATCA	1 cut(s)	426
BcnI	CCSGG	2 cut(s)	35, 533
BcoDI	GTCTC	3 cut(s)	107, 148, 348
BfaI	CTAG	4 cut(s)	275, 401, 435, 485
BfuI	GTATCC	1 cut(s)	544
BisI	GCNGC	1 cut(s)	107
BlsI	GCNGC	1 cut(s)	108
Bme1390I	CCNGG	2 cut(s)	35, 533
Bme18I	GGWCC	1 cut(s)	264
BmeT110I	CYCGRG	2 cut(s)	158, 188
BmgT120I	GGNCC	2 cut(s)	36, 264
BmiI	GGNNCC	1 cut(s)	474
BmrFI	CCNGG	2 cut(s)	35, 533
BmrI	ACTGGG	1 cut(s)	387
BmtI	GCTAGC	2 cut(s)	278, 438
BmuI	ACTGGG	1 cut(s)	387
Bpu10I	CCTNAGC	1 cut(s)	439
BpuEI	CTTGAG	2 cut(s)	131, 201
BpuMI	CCSGG	2 cut(s)	35, 533
BsaBI	GATNNNNATC	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	4 cut(s)	246, 416, 458, 546
Bsc4I	CCNNNNNNNGG	5 cut(s)	164, 322, 325, 488, 538
Bse1I	ACTGG	1 cut(s)	382
Bse8I	GATNNNNATC	1 cut(s)	525
BseDI	CCNNGG	4 cut(s)	246, 416, 458, 546
BseGI	GGATG	2 cut(s)	10, 222
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	5 cut(s)	164, 322, 325, 488, 538
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	1 cut(s)	382
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	1 cut(s)	118
BseYI	CCCAGC	2 cut(s)	163, 233
BshFI	GGCC	2 cut(s)	38, 373
BshNI	GGYRCC	1 cut(s)	472
BsiHKCI	CYCGRG	2 cut(s)	158, 188
BsiSI	CCGG	2 cut(s)	34, 533
BslI	CCNNNNNNNGG	5 cut(s)	164, 322, 325, 488, 538
BsmAI	GTCTC	3 cut(s)	107, 148, 348
BsnI	GGCC	2 cut(s)	38, 373
Bso31I	GGTCTC	1 cut(s)	107
BsoBI	CYCGRG	2 cut(s)	158, 188
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	4 cut(s)	30, 310, 426, 526
Bsp19I	CCATGG	1 cut(s)	546
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	2 cut(s)	38, 373
BspCNI	CTCAG	1 cut(s)	452
BspLI	GGNNCC	1 cut(s)	474
BspOI	GCTAGC	2 cut(s)	278, 438
BspPI	GGATC	2 cut(s)	25, 318
BspT107I	GGYRCC	1 cut(s)	472
BspTNI	GGTCTC	1 cut(s)	107
BsrBI	CCGCTC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	4 cut(s)	246, 416, 458, 546
BssMI	GATC	4 cut(s)	30, 310, 426, 526
BssSI	CACGAG	1 cut(s)	259
BssT1I	CCWWGG	3 cut(s)	246, 416, 546
Bst2BI	CACGAG	1 cut(s)	259
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	350
BstC8I	GCNNGC	5 cut(s)	155, 276, 371, 436, 504
BstDEI	CTNAG	1 cut(s)	439
BstDSI	CCRYGG	1 cut(s)	546
BstF5I	GGATG	2 cut(s)	10, 222
BstKTI	GATC	4 cut(s)	33, 313, 429, 529
BstMAI	GTCTC	3 cut(s)	107, 148, 348
BstMBI	GATC	4 cut(s)	30, 310, 426, 526
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 103
BstSCI	CCNGG	2 cut(s)	33, 531
BstSLI	GKGCMC	1 cut(s)	477
BstV1I	GCAGC	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BsuI	GTATCC	1 cut(s)	544
BsuRI	GGCC	2 cut(s)	38, 373
BtgI	CCRYGG	1 cut(s)	546
BtsCI	GGATG	2 cut(s)	10, 222
Cac8I	GCNNGC	5 cut(s)	155, 276, 371, 436, 504
CaiI	CAGNNNCTG	1 cut(s)	446
Cfr13I	GGNCC	2 cut(s)	36, 264
CviAII	CATG	2 cut(s)	147, 547
DdeI	CTNAG	1 cut(s)	439
DpnI	GATC	4 cut(s)	32, 312, 428, 528
DpnII	GATC	4 cut(s)	30, 310, 426, 526
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Eco130I	CCWWGG	3 cut(s)	246, 416, 546
Eco31I	GGTCTC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	122
Eco88I	CYCGRG	2 cut(s)	158, 188
EcoT14I	CCWWGG	3 cut(s)	246, 416, 546
ErhI	CCWWGG	3 cut(s)	246, 416, 546
FaeI	CATG	2 cut(s)	150, 550
FaiI	YATR	6 cut(s)	59, 77, 148, 213, 321, 548
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FatI	CATG	2 cut(s)	146, 546
FauI	CCCGC	1 cut(s)	5
FbaI	TGATCA	1 cut(s)	426
Fnu4HI	GCNGC	1 cut(s)	107
FokI	GGATG	2 cut(s)	17, 209
Fsp4HI	GCNGC	1 cut(s)	107
FspBI	CTAG	4 cut(s)	275, 401, 435, 485
GluI	GCNGC	1 cut(s)	107
GsaI	CCCAGC	2 cut(s)	167, 237
HaeIII	GGCC	2 cut(s)	38, 373
HapII	CCGG	2 cut(s)	34, 533
Hin1II	CATG	2 cut(s)	150, 550
HinfI	GANTC	1 cut(s)	86
HpaII	CCGG	2 cut(s)	34, 533
HphI	GGTGA	4 cut(s)	40, 436, 503, 508
Hpy188I	TCNGA	4 cut(s)	94, 102, 448, 462
Hpy188III	TCNNGA	1 cut(s)	259
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	2 cut(s)	355, 415
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	2 cut(s)	153, 387
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 103
HpyF3I	CTNAG	1 cut(s)	439
Hsp92II	CATG	2 cut(s)	150, 550
Ksp22I	TGATCA	1 cut(s)	426
Kzo9I	GATC	4 cut(s)	30, 310, 426, 526
LmnI	GCTCC	3 cut(s)	94, 283, 511
Lsp1109I	GCAGC	1 cut(s)	118
MaeI	CTAG	4 cut(s)	275, 401, 435, 485
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	4 cut(s)	32, 312, 428, 528
MbiI	CCGCTC	1 cut(s)	12
MboI	GATC	4 cut(s)	30, 310, 426, 526
MboII	GAAGA	4 cut(s)	364, 367, 416, 475
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	1 cut(s)	182
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	7 cut(s)	236, 255, 319, 351, 468, 487, 492
MseI	TTAA	2 cut(s)	126, 568
MspI	CCGG	2 cut(s)	34, 533
MspR9I	CCNGG	2 cut(s)	35, 533
MwoI	GCNNNNNNNGC	2 cut(s)	76, 103
NciI	CCSGG	2 cut(s)	35, 533
NcoI	CCATGG	1 cut(s)	546
NdeII	GATC	4 cut(s)	30, 310, 426, 526
NheI	GCTAGC	2 cut(s)	274, 434
NlaIII	CATG	2 cut(s)	150, 550
NlaIV	GGNNCC	1 cut(s)	474
NmuCI	GTSAC	1 cut(s)	256
PfoI	TCCNGGA	1 cut(s)	531
PkrI	GCNGC	1 cut(s)	108
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PspFI	CCCAGC	2 cut(s)	163, 233
PspN4I	GGNNCC	1 cut(s)	474
PspPI	GGNCC	2 cut(s)	36, 264
PsrI	GAACNNNNNNTAC	2 cut(s)	187, 219
PstNI	CAGNNNCTG	1 cut(s)	446
PsuI	RGATCY	1 cut(s)	310
SaqAI	TTAA	2 cut(s)	126, 568
SatI	GCNGC	1 cut(s)	107
Sau3AI	GATC	4 cut(s)	30, 310, 426, 526
Sau96I	GGNCC	2 cut(s)	36, 264
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	35, 533
SduI	GDGCHC	1 cut(s)	477
SinI	GGWCC	1 cut(s)	264
SmlI	CTYRAG	2 cut(s)	110, 216
SmoI	CTYRAG	2 cut(s)	110, 216
Sse9I	AATT	1 cut(s)	182
SsiI	CCGC	1 cut(s)	12
SspMI	CTAG	4 cut(s)	275, 401, 435, 485
StyD4I	CCNGG	2 cut(s)	33, 531
StyI	CCWWGG	3 cut(s)	246, 416, 546
TaaI	ACNGT	1 cut(s)	49
TasI	AATT	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	126, 568
Tru9I	TTAA	2 cut(s)	126, 568
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	264
XcmI	CCANNNNNNNNNTGG	1 cut(s)	484
XspI	CTAG	4 cut(s)	275, 401, 435, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.