FvH4_4g02561

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000109
Physical Location & Seq
Reverse (-)
2338531 .. 2339788
1258 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g02561.t1

Sequence Viewer

Length: 732 bp
ATGTCTAACGAGGTCTCATCCCAATGTCTAGCTGCTCTCGCCATCTGTGGTAACGGAAGAGTCTCTCTTGGAGCGGTCGGAGCAGCGGTGGTTTCGCCGCATCACTTTGCGGTTGGACGACTTTTCTTGTTGAAACGACGAAAACTAGAGGCTAGGCCTAATAGGAGAGGTGCCACATTCTCAACAATGGTCCCTGGTTCTTTGGGAGATCTATGTTTATGGTCAAGGGTTTCGATGGACTTAGTGACCCCTGACAAGATCCTGATTACCTCATATTCGGTTGACAAGATTGGCATTGGTACCAGAGCAAAGGTCAAAGTCATCCGCAATGTTACTGATCCAATCCGTGAGGCTTTCCCCCTATGGCTGCCTTGGTCCACCAGATTGTCACTGATCCAGGTCACTAGAGGTGGCCCTCAGGCACCAAGTCGAGGTGCGAATCTGAACGATTTTGGTGTTGGCTCCTCCTCTGGGTTCATGGCTATGAGGCTGGGAAGGGTTCAGTACCTCCTAGTTTTGATAAAGGCAAAGGATATTGATTCATCTTCGATGCTCTCTGGTGCTAAGAGAGATGCTTCAATGGATTTGGGAGGCATGGGAAAGAGAGTTCGCTCTGAGATGGATGTTGTGGTTATGGTTCCTTTTGAGTTGACTTTCATTGTTGAGCTCACTTTGCCCTATGAGGATGGAAAGATAAAAGGTCTCACCGGCAAAAAAGCGCAAGGTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

244

Amino Acids

26.15

Weight (kDa)

10.15

Isoelectric Point (pI)

33.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 299
AccB1I GGYRCC 3 cut(s) 170, 299, 421
AccBSI CCGCTC 1 cut(s) 74
AciI CCGC 5 cut(s) 74, 86, 98, 110, 325
AclWI GGATC 3 cut(s) 253, 332, 388
AfaI GTAC 2 cut(s) 301, 506
AfiI CCNNNNNNNGG 2 cut(s) 431, 471
AgsI TTSAA 2 cut(s) 133, 579
AjnI CCWGG 2 cut(s) 193, 396
AloI GAACNNNNNNTCC 2 cut(s) 591, 623
AluBI AGCT 2 cut(s) 32, 667
AluI AGCT 2 cut(s) 32, 667
Alw21I GWGCWC 1 cut(s) 669
Alw26I GTCTC 3 cut(s) 19, 67, 707
AlwI GGATC 3 cut(s) 253, 332, 388
AoxI GGCC 2 cut(s) 155, 412
ApeKI GCWGC 3 cut(s) 32, 83, 367
Asp718I GGTACC 1 cut(s) 299
AspLEI GCGC 1 cut(s) 721
AspS9I GGNCC 3 cut(s) 190, 375, 413
AsuHPI GGTGA 1 cut(s) 697
AvaII GGWCC 2 cut(s) 190, 375
AxyI CCTNAGG 1 cut(s) 417
BanI GGYRCC 3 cut(s) 170, 299, 421
BanII GRGCYC 1 cut(s) 669
Bbv12I GWGCWC 1 cut(s) 669
BbvI GCAGC 3 cut(s) 19, 95, 354
BccI CCATC 4 cut(s) 50, 229, 613, 680
BciT130I CCWGG 2 cut(s) 195, 398
BcoDI GTCTC 3 cut(s) 19, 67, 707
BfaI CTAG 5 cut(s) 29, 146, 153, 405, 512
BglII AGATCT 1 cut(s) 208
BisI GCNGC 4 cut(s) 33, 84, 98, 368
BlsI GCNGC 4 cut(s) 34, 85, 99, 369
Bme1390I CCNGG 2 cut(s) 195, 398
Bme18I GGWCC 2 cut(s) 190, 375
BmgT120I GGNCC 3 cut(s) 190, 375, 413
BmiI GGNNCC 6 cut(s) 172, 192, 301, 423, 463, 639
BmrFI CCNGG 2 cut(s) 195, 398
BmsI GCATC 3 cut(s) 109, 540, 562
BsaI GGTCTC 2 cut(s) 19, 707
BsaJI CCNNGG 2 cut(s) 193, 371
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 2 cut(s) 431, 471
Bse118I RCCGGY 1 cut(s) 707
Bse21I CCTNAGG 1 cut(s) 417
Bse3DI GCAATG 1 cut(s) 334
BseBI CCWGG 2 cut(s) 195, 398
BseDI CCNNGG 2 cut(s) 193, 371
BseGI GGATG 4 cut(s) 17, 321, 628, 691
BseLI CCNNNNNNNGG 2 cut(s) 431, 471
BseMI GCAATG 1 cut(s) 334
BseMII CTCAG 2 cut(s) 431, 606
BseRI GAGGAG 2 cut(s) 454, 457
BseXI GCAGC 3 cut(s) 19, 95, 354
BseYI CCCAGC 1 cut(s) 490
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 2 cut(s) 157, 414
BshNI GGYRCC 3 cut(s) 170, 299, 421
BsiEI CGRYCG 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 669
BsiSI CCGG 1 cut(s) 708
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 2 cut(s) 431, 471
BsmAI GTCTC 3 cut(s) 19, 67, 707
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 2 cut(s) 157, 414
Bso31I GGTCTC 2 cut(s) 19, 707
Bsp1286I GDGCHC 1 cut(s) 669
Bsp143I GATC 4 cut(s) 208, 258, 337, 393
BspACI CCGC 5 cut(s) 74, 86, 98, 110, 325
BspANI GGCC 2 cut(s) 157, 414
BspCNI CTCAG 2 cut(s) 430, 607
BspLI GGNNCC 6 cut(s) 172, 192, 301, 423, 463, 639
BspPI GGATC 3 cut(s) 253, 332, 388
BspT107I GGYRCC 3 cut(s) 170, 299, 421
BspTNI GGTCTC 2 cut(s) 19, 707
BsrBI CCGCTC 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 334
BsrFI RCCGGY 1 cut(s) 707
BssAI RCCGGY 1 cut(s) 707
BssECI CCNNGG 2 cut(s) 193, 371
BssMI GATC 4 cut(s) 208, 258, 337, 393
BssT1I CCWWGG 1 cut(s) 371
Bst2UI CCWGG 2 cut(s) 195, 398
Bst6I CTCTTC 1 cut(s) 52
BstDEI CTNAG 4 cut(s) 241, 417, 564, 615
BstF5I GGATG 4 cut(s) 17, 321, 628, 691
BstHHI GCGC 1 cut(s) 721
BstKTI GATC 4 cut(s) 211, 261, 340, 396
BstMAI GTCTC 3 cut(s) 19, 67, 707
BstMBI GATC 4 cut(s) 208, 258, 337, 393
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 3 cut(s) 38, 80, 673
BstNI CCWGG 2 cut(s) 195, 398
BstSCI CCNGG 2 cut(s) 193, 396
BstV1I GCAGC 3 cut(s) 19, 95, 354
BstX2I RGATCY 2 cut(s) 208, 258
BstYI RGATCY 2 cut(s) 208, 258
Bsu36I CCTNAGG 1 cut(s) 417
BsuRI GGCC 2 cut(s) 157, 414
BtsCI GGATG 4 cut(s) 17, 321, 628, 691
BtsIMutI CAGTG 1 cut(s) 389
CfoI GCGC 1 cut(s) 721
Cfr10I RCCGGY 1 cut(s) 707
Cfr13I GGNCC 3 cut(s) 190, 375, 413
Csp6I GTAC 2 cut(s) 300, 505
CviAII CATG 2 cut(s) 478, 595
CviQI GTAC 2 cut(s) 300, 505
DdeI CTNAG 4 cut(s) 241, 417, 564, 615
DpnI GATC 4 cut(s) 210, 260, 339, 395
DpnII GATC 4 cut(s) 208, 258, 337, 393
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
Ecl136II GAGCTC 1 cut(s) 667
Eco130I CCWWGG 1 cut(s) 371
Eco147I AGGCCT 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 669
Eco31I GGTCTC 2 cut(s) 19, 707
Eco47I GGWCC 2 cut(s) 190, 375
Eco53kI GAGCTC 1 cut(s) 667
Eco81I CCTNAGG 1 cut(s) 417
EcoICRI GAGCTC 1 cut(s) 667
EcoRII CCWGG 2 cut(s) 193, 396
EcoT14I CCWWGG 1 cut(s) 371
EcoT38I GRGCYC 1 cut(s) 669
ErhI CCWWGG 1 cut(s) 371
FaeI CATG 2 cut(s) 481, 598
FaiI YATR 9 cut(s) 214, 220, 274, 364, 479, 485, 596, 635, 681
FaqI GGGAC 1 cut(s) 176
FatI CATG 2 cut(s) 477, 594
Fnu4HI GCNGC 4 cut(s) 33, 84, 98, 368
FokI GGATG 4 cut(s) 4, 308, 635, 698
FriOI GRGCYC 1 cut(s) 669
Fsp4HI GCNGC 4 cut(s) 33, 84, 98, 368
FspBI CTAG 5 cut(s) 29, 146, 153, 405, 512
GlaI GCGC 1 cut(s) 720
GluI GCNGC 4 cut(s) 33, 84, 98, 368
GsaI CCCAGC 1 cut(s) 494
HaeIII GGCC 2 cut(s) 157, 414
HapII CCGG 1 cut(s) 708
HhaI GCGC 1 cut(s) 721
Hin1II CATG 2 cut(s) 481, 598
Hin6I GCGC 1 cut(s) 719
HinP1I GCGC 1 cut(s) 719
HincII GTYRAC 2 cut(s) 283, 651
HindII GTYRAC 2 cut(s) 283, 651
HinfI GANTC 3 cut(s) 60, 439, 539
HpaII CCGG 1 cut(s) 708
HphI GGTGA 1 cut(s) 697
Hpy166II GTNNAC 3 cut(s) 283, 378, 651
Hpy188I TCNGA 3 cut(s) 80, 444, 616
Hpy188III TCNNGA 1 cut(s) 262
Hpy8I GTNNAC 3 cut(s) 283, 378, 651
Hpy99I CGWCG 1 cut(s) 141
HpyAV CCTTC 1 cut(s) 489
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 80, 673
HpyF3I CTNAG 4 cut(s) 241, 417, 564, 615
Hsp92II CATG 2 cut(s) 481, 598
HspAI GCGC 1 cut(s) 719
KpnI GGTACC 1 cut(s) 303
Kzo9I GATC 4 cut(s) 208, 258, 337, 393
LmnI GCTCC 3 cut(s) 71, 80, 467
Lsp1109I GCAGC 3 cut(s) 19, 95, 354
LweI GCATC 3 cut(s) 109, 540, 562
MaeI CTAG 5 cut(s) 29, 146, 153, 405, 512
MaeIII GTNAC 5 cut(s) 50, 244, 331, 387, 400
MalI GATC 4 cut(s) 210, 260, 339, 395
MbiI CCGCTC 1 cut(s) 74
MboI GATC 4 cut(s) 208, 258, 337, 393
MboII GAAGA 2 cut(s) 69, 537
MflI RGATCY 2 cut(s) 208, 258
MhlI GDGCHC 1 cut(s) 669
MlyI GAGTC 1 cut(s) 69
MmeI TCCRAC 2 cut(s) 58, 94
MslI CAYNNNNRTG 2 cut(s) 22, 482
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 1 cut(s) 708
MspR9I CCNGG 2 cut(s) 195, 398
MvaI CCWGG 2 cut(s) 195, 398
MwoI GCNNNNNNNGC 3 cut(s) 38, 80, 673
NdeII GATC 4 cut(s) 208, 258, 337, 393
NlaIII CATG 2 cut(s) 481, 598
NlaIV GGNNCC 6 cut(s) 172, 192, 301, 423, 463, 639
NmuCI GTSAC 3 cut(s) 244, 387, 400
PceI AGGCCT 1 cut(s) 157
PfeI GAWTC 2 cut(s) 439, 539
PkrI GCNGC 4 cut(s) 34, 85, 99, 369
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
Psp124BI GAGCTC 1 cut(s) 669
Psp6I CCWGG 2 cut(s) 193, 396
PspFI CCCAGC 1 cut(s) 490
PspGI CCWGG 2 cut(s) 193, 396
PspN4I GGNNCC 6 cut(s) 172, 192, 301, 423, 463, 639
PspPI GGNCC 3 cut(s) 190, 375, 413
PsuI RGATCY 2 cut(s) 208, 258
RsaI GTAC 2 cut(s) 301, 506
RsaNI GTAC 2 cut(s) 300, 505
RseI CAYNNNNRTG 2 cut(s) 22, 482
SacI GAGCTC 1 cut(s) 669
SatI GCNGC 4 cut(s) 33, 84, 98, 368
Sau3AI GATC 4 cut(s) 208, 258, 337, 393
Sau96I GGNCC 3 cut(s) 190, 375, 413
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 2 cut(s) 195, 398
SduI GDGCHC 1 cut(s) 669
SfaNI GCATC 3 cut(s) 109, 540, 562
SinI GGWCC 2 cut(s) 190, 375
SmiMI CAYNNNNRTG 2 cut(s) 22, 482
SseBI AGGCCT 1 cut(s) 157
SsiI CCGC 5 cut(s) 74, 86, 98, 110, 325
SspMI CTAG 5 cut(s) 29, 146, 153, 405, 512
SstI GAGCTC 1 cut(s) 669
StuI AGGCCT 1 cut(s) 157
StyD4I CCNGG 2 cut(s) 193, 396
StyI CCWWGG 1 cut(s) 371
TaqI TCGA 3 cut(s) 233, 430, 548
TauI GCSGC 1 cut(s) 100
TfiI GAWTC 2 cut(s) 439, 539
TscAI CASTG 1 cut(s) 396
TseFI GTSAC 3 cut(s) 244, 387, 400
TseI GCWGC 3 cut(s) 32, 83, 367
Tsp45I GTSAC 3 cut(s) 244, 387, 400
TspDTI ATGAA 3 cut(s) 466, 531, 646
TspGWI ACGGA 2 cut(s) 69, 335
TspRI CASTG 1 cut(s) 396
VpaK11BI GGWCC 2 cut(s) 190, 375
XspI CTAG 5 cut(s) 29, 146, 153, 405, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.