Rorug06G0401400

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000109
Physical Location & Seq
Reverse (-)
54640434 .. 54645677
5244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0401400.1

Sequence Viewer

Length: 2919 bp
ATGGCTAGCCGGCAAGCGACGAAGCTCAGCAAATCGGCGATGGTTTTGGCGGCCATGAACGGCGCCTCCAAAACCTCAAGAAGTTCGCTCTCTCGGTGTCGTGAAACTGCGGTGGCTGCCTCCAAGTTTTCCATGGGCGGCTCCGTCAATGTCGTTTCGGCCAAGTATGTGGCCAACACTCTCAGTCGGAGCTTTCACTCTTCGGGTCCTCGTTTCAACTCCGCCAGCAGCGCTGCTCAGGCTCAGCAGAATGAGTTCACTGAGATGGCATGGGAGGGCATAATTGGGGCTGTGGAAGCCGCCAGAAATAGCAAGCAACAAGTGGTGGAATCTGAGCACCTGATGAAAGCTGTCTTGGAGCAGAAGGATGGTTTGGCCAGGAGAATCTTCACCAAGGCTGGTGTAGACAACACCACTGTTCTCCAGGCCACCGATGACTTCATTGCTCAGCAACCCAAGGTGATGGGTGCGACCAGTGGACCTATAATAGGCACACATCTCGGCGCTCTGTTGGAGAATGCCCGAAGGCAGAAGAAAGAAATGAATGATGATTTTGTGTCTGTGGAGCACCTTGTGTTGGCGTTTCAGTCCGACACACGGTTTGGGCAGCAATTGTTCAAAAACCTCCAGCTTACTGACAAGGATTTGAAGGAGGCTGTTAAACATGTTCGTGGAAATCAGAGAGTCACTGATCAAAATCCTGAAGGGAAATATGAGGCTTTGACTAAATATGGGAACGACTTGACTGAGCTCGCCAGTCGTGGCAAACTTGATCCAGTTATTGGACGGGATGATGAAATACGGCGTTGTATCCAAATACTGTCCAGGAGAACAAAAAATAATCCTGTTATTATTGGAGAGCCTGGTGTCGGAAAAACTGCAATCGCTGAAGGATTAGCTCAACGGATTGTGCGTGGGGATGTTCCGGAACCCCTCTTGAACAGAAAGTTGATTTCTTTAGATATGGGTTCATTGGTCGCTGGAGCCAAGTTTCGCGGTGACTTTGAGGAAAGATTGAAAGCTGTATTGAAGGAAGTTACTGCTTCAAATGGACAGATCATATTATTCATTGATGAGATTCATACTGTTGTAGGAGCAGGGGCTACAAGTGGTGCAATGGATGCTGGGAACTTGTTGAAACCAATGCTTGGGCGGGGTGAACTACGGTGTATAGGAGCAACCACTTTGAATGAGTACAGAAAATACATTGAGAAGGATCCTGCACTGGAGCGTAGGTTTCAGCAGGTTTTTTGTGGTCAGCCATCTGTCGAAGACACAATATCCATTCTTCGTGGGTTGCGTGAGCGGTACGAGCTGCATCATGGTGTGAAAATATCAGATAGTGCCCTTGTTTCTGCAGCAGTTCTTTCTGACAGATACATTACAGAACGATTTTTGCCTGACAAAGCCATTGATCTTGTTGATGAAGCTGCTGCAAAGCTGAAAATGGAGATCACATCCAAGCCAACTGAGTTAGATGAGGTAGACAGAGCTGTACTGAAGTTGGAGATGGAGAAGCTGTCTTTGCAAAATGACACAGATAAATCATCGAAAGAAAGGTTAAGCAAGCTGGAGAGTGACCTCGCATTGCTCAAACAGAAACAAAAAGAATTTAATGAACAGTGGGATCGTGAGAAGGCTCTCATGACTCGAATACGATCAATTAAAGAAGAGATTGATAGAGTAAACCAAGAGATGGAAGCTGCTGAACGTGCATATGACCTAAGTCGTGCTGCTGAGCTCAAATATGGAACTCTAATGTCCCTGCAGCGCCAGTTAGAAGAGGCTGAGAAAAACCTTTCTGAGTACCAGAAGTCTGGAAAATCTTTCCTACGAGAAGAAGTCACCGATCTTGATATTGCTGAGATTGTAAGCAAATGGACTGGTATACCCTTGTCAAACCTTCAACAGTCGGAAAGAGACAAGCTAGTCATGCTAGAACAGGTGCTTCATAAGAGGGTAGTGGGTCAAGATATAGCCGTGAAATCGGTAGCTGATGCAATCAGACGTTCAAGGGCTGGTCTATCAGACCCAAACCGACCTATTGCAAGTTTCATGTTTTTGGGACCTACTGGTGTGGGGAAAACAGAGCTTGCAAAGGCCTTGGCCAGCTATCTCTTCAACACAGAAAATGCTCTGGTTAGGATTGATATGAGTGAGTACATGGAAAAGCATGCAGTTTCACGTTTGGTGGGTGCTCCGCCTGGTTATGTTGGTTATGAAGAAGGTGGACAACTAACAGAAGTGGTTCGTCGAAGACCCTATTGTGTAGTGCTATTCGATGAAATAGAGAAAGCACATCAGGATGTGTTCAATATTTTGTTACAATTGCTGGATGATGGAAGGATAACCGACTCACAAGGAAGGACTGTAAGCTTCACCAATTGTGTTGTGATAATGACCTCAAATCTTGGCTCCCACTATATACTTGAAACTCTTCGTAATACTCAAGACAGCAAGGATGCAGTTTATGAGTTGATGAAAAGACAAGTGGTTGAATTGGCGAGACATACTTTCCGCCCTGAGTTTTTGAATCGAGTTGATGAGTTTATCGTGTTCCAGCCTTTGGACTCCAAAGAGATCTGTAACATTGTTGACATACAGATGAACCGGGTTAAAGATAGGCTGAAGCAAAAGAAAATCGAGCTTCATTATACAAAGGAAGCTGTGGAGCTTCTTGGTAAATTGGGCTTTGATCCGAACTTCGGAGCAAGGCCAGTAAAGAGGGTGATACAGCAGCTGGTTGAGAATGAAATTGCAATGGGACTGTTGAGAGGCGATTTCAGTGAGGAGGATGCGATCATTGTTGATGCTGAGGTGTCCCCATCCGCCAAAGATATTCCTCCACAGAAGAGGTTGCGCATCAGGAAATTGGAGAATGCTTCTTCTAGTGTAGATGACATGGTTGCGAATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

972

Amino Acids

108.53

Weight (kDa)

6.77

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clp_N PF02861 85 - 208 9.6e-29 Clp repeat (R) N-terminal domain
NBD_SMAX1 PF23569 265 - 365 1.2e-06 SMAX1 nucleotide binding domain
AAA PF00004 284 - 415 8.1e-13 ATPase family associated with various cellular activities (AAA)
AAA_lid_9 PF17871 422 - 524 5.8e-35 AAA lid domain
AAA_2 PF07724 680 - 849 9.4e-69 AAA domain (Cdc48 subfamily)
AAA_5 PF07728 685 - 806 3.4e-12 AAA domain (dynein-related subfamily)
AAA PF00004 686 - 808 3.1e-10 ATPase family associated with various cellular activities (AAA)
ClpB_D2-small PF10431 856 - 936 1.7e-23 C-terminal, D2-small domain, of ClpB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1928
Acc16I TGCGCA 1 cut(s) 2861
Acc36I ACCTGC 1 cut(s) 1234
AccB1I GGYRCC 1 cut(s) 62
AccB7I CCANNNNNTGG 4 cut(s) 782, 1148, 1696, 2566
AccBSI CCGCTC 1 cut(s) 1306
AccI GTMKAC 3 cut(s) 405, 1485, 1888
AccII CGCG 1 cut(s) 996
AccIII TCCGGA 1 cut(s) 925
AclWI GGATC 5 cut(s) 767, 1211, 1224, 1635, 2690
AcoI YGGCCR 5 cut(s) 51, 159, 171, 375, 2106
AcsI RAATTY 1 cut(s) 1610
AcuI CTGAAG 4 cut(s) 723, 909, 1520, 2648
AcyI GRCGYC 1 cut(s) 63
AdeI CACNNNGTG 1 cut(s) 574
AfaI GTAC 5 cut(s) 1196, 1310, 1497, 1808, 2162
AfeI AGCGCT 1 cut(s) 232
AfiI CCNNNNNNNGG 9 cut(s) 488, 577, 597, 782, 869, 1148, 1696, 2566, 2705
AflIII ACRYGT 1 cut(s) 664
AjnI CCWGG 5 cut(s) 377, 423, 824, 862, 2203
AjuI GAANNNNNNNTTGG 4 cut(s) 338, 356, 370, 388
AloI GAACNNNNNNTCC 2 cut(s) 50, 82
Alw21I GWGCWC 5 cut(s) 339, 570, 753, 1743, 2200
Alw26I GTCTC 2 cut(s) 1914, 2500
AlwI GGATC 5 cut(s) 767, 1211, 1224, 1635, 2690
AlwNI CAGNNNCTG 1 cut(s) 2740
Aor13HI TCCGGA 1 cut(s) 925
Aor51HI AGCGCT 1 cut(s) 232
AoxI GGCC 8 cut(s) 51, 159, 171, 375, 426, 2100, 2106, 2714
ApoI RAATTY 1 cut(s) 1610
ArsI GACNNNNNNTTYG 2 cut(s) 584, 616
Asp700I GAANNNNTTC 3 cut(s) 254, 2247, 2436
AspLEI GCGC 5 cut(s) 65, 233, 506, 1773, 2862
AspS9I GGNCC 3 cut(s) 206, 479, 2066
AsuC2I CCSGG 1 cut(s) 2612
AsuHPI GGTGA 7 cut(s) 382, 472, 1010, 1169, 1837, 2371, 2740
AsuNHI GCTAGC 1 cut(s) 5
AvaII GGWCC 3 cut(s) 206, 479, 2066
BaeGI GKGCMC 1 cut(s) 1348
BalI TGGCCA 3 cut(s) 173, 377, 2108
BamHI GGATCC 1 cut(s) 1216
BanI GGYRCC 1 cut(s) 62
BanII GRGCYC 2 cut(s) 753, 1743
BbsI GAAGAC 2 cut(s) 1278, 2263
Bbv12I GWGCWC 5 cut(s) 339, 570, 753, 1743, 2200
BbvCI CCTCAGC 1 cut(s) 2814
BccI CCATC 9 cut(s) 34, 259, 362, 457, 1270, 1504, 1690, 2333, 2833
BceAI ACGGC 3 cut(s) 76, 818, 1964
BcgI CGANNNNNNTGC 2 cut(s) 481, 515
BciT130I CCWGG 5 cut(s) 379, 425, 826, 864, 2205
BciVI GTATCC 1 cut(s) 821
BclI TGATCA 1 cut(s) 691
BcnI CCSGG 1 cut(s) 2612
BcoDI GTCTC 2 cut(s) 1914, 2500
BfaI CTAG 4 cut(s) 6, 1928, 1937, 2889
BfmI CTRYAG 2 cut(s) 1356, 1766
BfoI RGCGCY 4 cut(s) 66, 234, 507, 1774
BfuAI ACCTGC 1 cut(s) 1234
BfuI GTATCC 1 cut(s) 821
BglII AGATCT 1 cut(s) 2580
BlpI GCTNAGC 4 cut(s) 26, 243, 447, 1737
Bme1390I CCNGG 6 cut(s) 379, 425, 826, 864, 2205, 2612
Bme18I GGWCC 3 cut(s) 206, 479, 2066
BmgT120I GGNCC 3 cut(s) 206, 479, 2066
BmiI GGNNCC 8 cut(s) 64, 142, 207, 930, 985, 1218, 2067, 2416
BmrFI CCNGG 6 cut(s) 379, 425, 826, 864, 2205, 2612
BmsI GCATC 7 cut(s) 1111, 1327, 1987, 2452, 2785, 2800, 2871
BmtI GCTAGC 1 cut(s) 9
BoxI GACNNNNGTC 1 cut(s) 1725
BpiI GAAGAC 2 cut(s) 1278, 2263
BpmI CTGGAG 5 cut(s) 407, 611, 1002, 1247, 1592
Bpu10I CCTNAGC 2 cut(s) 237, 2814
Bpu1102I GCTNAGC 4 cut(s) 26, 243, 447, 1737
BpuEI CTTGAG 2 cut(s) 61, 2433
BpuMI CCSGG 1 cut(s) 2612
BsaBI GATNNNNATC 1 cut(s) 696
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 4 cut(s) 132, 393, 456, 2103
BsaWI WCCGGW 1 cut(s) 925
BsaXI ACNNNNNCTCC 6 cut(s) 50, 80, 1220, 1250, 1505, 1535
Bsc4I CCNNNNNNNGG 9 cut(s) 488, 577, 597, 782, 869, 1148, 1696, 2566, 2705
Bse118I RCCGGY 1 cut(s) 9
Bse1I ACTGG 8 cut(s) 474, 756, 776, 1230, 1774, 1888, 2077, 2717
Bse3DI GCAATG 4 cut(s) 441, 1122, 1586, 2766
Bse8I GATNNNNATC 1 cut(s) 696
BseAI TCCGGA 1 cut(s) 925
BseBI CCWGG 5 cut(s) 379, 425, 826, 864, 2205
BseDI CCNNGG 4 cut(s) 132, 393, 456, 2103
BseJI GATNNNNATC 1 cut(s) 696
BseLI CCNNNNNNNGG 9 cut(s) 488, 577, 597, 782, 869, 1148, 1696, 2566, 2705
BseMI GCAATG 4 cut(s) 441, 1122, 1586, 2766
BseNI ACTGG 8 cut(s) 474, 756, 776, 1230, 1774, 1888, 2077, 2717
BseRI GAGGAG 1 cut(s) 2804
BseSI GKGCMC 1 cut(s) 1348
BseYI CCCAGC 1 cut(s) 1124
BsgI GTGCAG 1 cut(s) 1206
Bsh1236I CGCG 1 cut(s) 996
BshFI GGCC 8 cut(s) 53, 161, 173, 377, 428, 2102, 2108, 2716
BshNI GGYRCC 1 cut(s) 62
BsiHKAI GWGCWC 5 cut(s) 339, 570, 753, 1743, 2200
BsiSI CCGG 3 cut(s) 10, 926, 2611
BslFI GGGAC 4 cut(s) 1747, 2079, 2778, 2806
BslI CCNNNNNNNGG 9 cut(s) 488, 577, 597, 782, 869, 1148, 1696, 2566, 2705
BsmAI GTCTC 2 cut(s) 1914, 2500
BsmFI GGGAC 4 cut(s) 1747, 2079, 2778, 2806
BsmI GAATGC 2 cut(s) 523, 2884
BsnI GGCC 8 cut(s) 53, 161, 173, 377, 428, 2102, 2108, 2716
Bsp1286I GDGCHC 6 cut(s) 339, 570, 753, 1348, 1743, 2200
Bsp13I TCCGGA 1 cut(s) 925
Bsp1720I GCTNAGC 4 cut(s) 26, 243, 447, 1737
Bsp19I CCATGG 1 cut(s) 132
BspANI GGCC 8 cut(s) 53, 161, 173, 377, 428, 2102, 2108, 2716
BspEI TCCGGA 1 cut(s) 925
BspFNI CGCG 1 cut(s) 996
BspHI TCATGA 1 cut(s) 1644
BspLI GGNNCC 8 cut(s) 64, 142, 207, 930, 985, 1218, 2067, 2416
BspMAI CTGCAG 2 cut(s) 1360, 1770
BspMI ACCTGC 1 cut(s) 1234
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 5 cut(s) 767, 1211, 1224, 1635, 2690
BspT107I GGYRCC 1 cut(s) 62
BsrBI CCGCTC 1 cut(s) 1306
BsrDI GCAATG 4 cut(s) 441, 1122, 1586, 2766
BsrFI RCCGGY 1 cut(s) 9
BsrI ACTGG 8 cut(s) 474, 756, 776, 1230, 1774, 1888, 2077, 2717
BssAI RCCGGY 1 cut(s) 9
BssECI CCNNGG 4 cut(s) 132, 393, 456, 2103
BssNAI GTATAC 1 cut(s) 1889
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 4 cut(s) 132, 393, 456, 2103
Bst1107I GTATAC 1 cut(s) 1889
Bst2UI CCWGG 5 cut(s) 379, 425, 826, 864, 2205
Bst4CI ACNGT 9 cut(s) 418, 600, 822, 1087, 1167, 1623, 1911, 2371, 2769
Bst6I CTCTTC 6 cut(s) 205, 1665, 1776, 2123, 2442, 2846
BstACI GRCGYC 1 cut(s) 63
BstAPI GCANNNNNTGC 1 cut(s) 1121
BstDSI CCRYGG 1 cut(s) 132
BstENI CCTNNNNNAGG 1 cut(s) 486
BstFNI CGCG 1 cut(s) 996
BstH2I RGCGCY 4 cut(s) 66, 234, 507, 1774
BstHHI GCGC 5 cut(s) 65, 233, 506, 1773, 2862
BstMAI GTCTC 2 cut(s) 1914, 2500
BstMWI GCNNNNNNNGC 9 cut(s) 116, 230, 239, 296, 1121, 1312, 1525, 1712, 1933
BstNI CCWGG 5 cut(s) 379, 425, 826, 864, 2205
BstNSI RCATGY 2 cut(s) 668, 2177
BstPAI GACNNNNGTC 1 cut(s) 1725
BstSCI CCNGG 6 cut(s) 377, 423, 824, 862, 2203, 2610
BstSFI CTRYAG 2 cut(s) 1356, 1766
BstSLI GKGCMC 1 cut(s) 1348
BstUI CGCG 1 cut(s) 996
BstV2I GAAGAC 2 cut(s) 1278, 2263
BstX2I RGATCY 2 cut(s) 1216, 2580
BstXI CCANNNNNNTGG 3 cut(s) 169, 463, 1817
BstYI RGATCY 2 cut(s) 1216, 2580
BstZ17I GTATAC 1 cut(s) 1889
BsuI GTATCC 1 cut(s) 821
BsuRI GGCC 8 cut(s) 53, 161, 173, 377, 428, 2102, 2108, 2716
BtgI CCRYGG 1 cut(s) 132
BtgZI GCGATG 1 cut(s) 53
BtsIMutI CAGTG 7 cut(s) 258, 414, 481, 687, 1223, 1628, 2791
BveI ACCTGC 1 cut(s) 1234
CaiI CAGNNNCTG 1 cut(s) 2740
CciI TCATGA 1 cut(s) 1644
CfoI GCGC 5 cut(s) 65, 233, 506, 1773, 2862
Cfr10I RCCGGY 1 cut(s) 9
Cfr13I GGNCC 3 cut(s) 206, 479, 2066
Csp6I GTAC 5 cut(s) 1195, 1309, 1496, 1807, 2161
CviQI GTAC 5 cut(s) 1195, 1309, 1496, 1807, 2161
DinI GGCGCC 1 cut(s) 64
DraIII CACNNNGTG 1 cut(s) 574
DrdI GACNNNNNNGTC 1 cut(s) 1928
DseDI GACNNNNNNGTC 1 cut(s) 1928
EaeI YGGCCR 5 cut(s) 51, 159, 171, 375, 2106
Eam1104I CTCTTC 6 cut(s) 205, 1665, 1776, 2123, 2442, 2846
EarI CTCTTC 6 cut(s) 205, 1665, 1776, 2123, 2442, 2846
EciI GGCGGA 4 cut(s) 211, 2190, 2507, 2818
Ecl136II GAGCTC 2 cut(s) 751, 1741
Eco130I CCWWGG 4 cut(s) 132, 393, 456, 2103
Eco147I AGGCCT 1 cut(s) 2102
Eco24I GRGCYC 2 cut(s) 753, 1743
Eco47I GGWCC 3 cut(s) 206, 479, 2066
Eco47III AGCGCT 1 cut(s) 232
Eco53kI GAGCTC 2 cut(s) 751, 1741
Eco57I CTGAAG 4 cut(s) 723, 909, 1520, 2648
EcoICRI GAGCTC 2 cut(s) 751, 1741
EcoNI CCTNNNNNAGG 1 cut(s) 486
EcoO109I RGGNCCY 2 cut(s) 206, 2066
EcoRII CCWGG 5 cut(s) 377, 423, 824, 862, 2203
EcoT14I CCWWGG 4 cut(s) 132, 393, 456, 2103
EcoT38I GRGCYC 2 cut(s) 753, 1743
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 4 cut(s) 132, 393, 456, 2103
FaqI GGGAC 4 cut(s) 1747, 2079, 2778, 2806
FauI CCCGC 1 cut(s) 1146
FauNDI CATATG 1 cut(s) 1717
FbaI TGATCA 1 cut(s) 691
FblI GTMKAC 3 cut(s) 405, 1485, 1888
FriOI GRGCYC 2 cut(s) 753, 1743
FspBI CTAG 4 cut(s) 6, 1928, 1937, 2889
FspI TGCGCA 1 cut(s) 2861
GlaI GCGC 5 cut(s) 64, 232, 505, 1772, 2861
GsaI CCCAGC 1 cut(s) 1128
GsuI CTGGAG 5 cut(s) 407, 611, 1002, 1247, 1592
HaeII RGCGCY 4 cut(s) 66, 234, 507, 1774
HaeIII GGCC 8 cut(s) 53, 161, 173, 377, 428, 2102, 2108, 2716
HapII CCGG 3 cut(s) 10, 926, 2611
HhaI GCGC 5 cut(s) 65, 233, 506, 1773, 2862
Hin1I GRCGYC 1 cut(s) 63
Hin6I GCGC 5 cut(s) 63, 231, 504, 1771, 2860
HinP1I GCGC 5 cut(s) 63, 231, 504, 1771, 2860
HincII GTYRAC 1 cut(s) 2596
HindII GTYRAC 1 cut(s) 2596
HindIII AAGCTT 1 cut(s) 2374
HinfI GANTC 8 cut(s) 329, 384, 684, 1078, 1648, 2354, 2533, 2570
HpaII CCGG 3 cut(s) 10, 926, 2611
HphI GGTGA 7 cut(s) 382, 472, 1010, 1169, 1837, 2371, 2740
Hpy166II GTNNAC 9 cut(s) 258, 406, 479, 1160, 1486, 1687, 1889, 2231, 2596
Hpy8I GTNNAC 9 cut(s) 258, 406, 479, 1160, 1486, 1687, 1889, 2231, 2596
Hpy99I CGWCG 2 cut(s) 22, 2256
HpyCH4III ACNGT 9 cut(s) 418, 600, 822, 1087, 1167, 1623, 1911, 2371, 2769
HpyCH4IV ACGT 3 cut(s) 1711, 2008, 2185
HpyF10VI GCNNNNNNNGC 9 cut(s) 116, 230, 239, 296, 1121, 1312, 1525, 1712, 1933
HpySE526I ACGT 3 cut(s) 1711, 2008, 2185
Hsp92I GRCGYC 1 cut(s) 63
HspAI GCGC 5 cut(s) 63, 231, 504, 1771, 2860
KasI GGCGCC 1 cut(s) 62
Kpn2I TCCGGA 1 cut(s) 925
KroI GCCGGC 1 cut(s) 9
KroNI GCCGGC 1 cut(s) 11
Ksp22I TGATCA 1 cut(s) 691
LweI GCATC 7 cut(s) 1111, 1327, 1987, 2452, 2785, 2800, 2871
MaeI CTAG 4 cut(s) 6, 1928, 1937, 2889
MaeII ACGT 3 cut(s) 1711, 2008, 2185
MaeIII GTNAC 7 cut(s) 685, 998, 1036, 1577, 1843, 2322, 2585
MbiI CCGCTC 1 cut(s) 1306
MfeI CAATTG 3 cut(s) 611, 2327, 2383
MflI RGATCY 2 cut(s) 1216, 2580
MhlI GDGCHC 6 cut(s) 339, 570, 753, 1348, 1743, 2200
MlsI TGGCCA 3 cut(s) 173, 377, 2108
MluNI TGGCCA 3 cut(s) 173, 377, 2108
Mly113I GGCGCC 1 cut(s) 63
MlyI GAGTC 4 cut(s) 693, 1642, 2348, 2564
MmeI TCCRAC 6 cut(s) 167, 492, 615, 850, 1485, 1893
Mox20I TGGCCA 3 cut(s) 173, 377, 2108
MroI TCCGGA 1 cut(s) 925
MroNI GCCGGC 1 cut(s) 9
MroXI GAANNNNTTC 3 cut(s) 254, 2247, 2436
MscI TGGCCA 3 cut(s) 173, 377, 2108
MseI TTAA 5 cut(s) 660, 1562, 1614, 1665, 2616
MslI CAYNNNNRTG 5 cut(s) 263, 669, 1323, 2304, 2603
Msp20I TGGCCA 3 cut(s) 173, 377, 2108
MspA1I CMGCKG 1 cut(s) 2740
MspI CCGG 3 cut(s) 10, 926, 2611
MspR9I CCNGG 6 cut(s) 379, 425, 826, 864, 2205, 2612
MunI CAATTG 3 cut(s) 611, 2327, 2383
Mva1269I GAATGC 2 cut(s) 523, 2884
MvaI CCWGG 5 cut(s) 379, 425, 826, 864, 2205
MvnI CGCG 1 cut(s) 996
MwoI GCNNNNNNNGC 9 cut(s) 116, 230, 239, 296, 1121, 1312, 1525, 1712, 1933
NaeI GCCGGC 1 cut(s) 11
NarI GGCGCC 1 cut(s) 63
NciI CCSGG 1 cut(s) 2612
NcoI CCATGG 1 cut(s) 132
NdeI CATATG 1 cut(s) 1717
NgoMIV GCCGGC 1 cut(s) 9
NheI GCTAGC 1 cut(s) 5
NlaIV GGNNCC 8 cut(s) 64, 142, 207, 930, 985, 1218, 2067, 2416
NmeAIII GCCGAG 1 cut(s) 480
NmuCI GTSAC 4 cut(s) 685, 998, 1577, 1843
NsbI TGCGCA 1 cut(s) 2861
NspI RCATGY 2 cut(s) 668, 2177
PaeI GCATGC 1 cut(s) 2177
PagI TCATGA 1 cut(s) 1644
PceI AGGCCT 1 cut(s) 2102
PciI ACATGT 1 cut(s) 664
PcsI WCGNNNNNNNCGW 2 cut(s) 910, 1297
PctI GAATGC 2 cut(s) 523, 2884
PdiI GCCGGC 1 cut(s) 11
PdmI GAANNNNTTC 3 cut(s) 254, 2247, 2436
PfeI GAWTC 4 cut(s) 329, 384, 1078, 2533
PflMI CCANNNNNTGG 4 cut(s) 782, 1148, 1696, 2566
PfoI TCCNGGA 1 cut(s) 824
PleI GAGTC 4 cut(s) 692, 1642, 2348, 2564
PluTI GGCGCC 1 cut(s) 66
PpsI GAGTC 4 cut(s) 692, 1642, 2348, 2564
PpuMI RGGWCCY 2 cut(s) 206, 2066
PscI ACATGT 1 cut(s) 664
PshAI GACNNNNGTC 1 cut(s) 1725
Psp124BI GAGCTC 2 cut(s) 753, 1743
Psp5II RGGWCCY 2 cut(s) 206, 2066
Psp6I CCWGG 5 cut(s) 377, 423, 824, 862, 2203
PspFI CCCAGC 1 cut(s) 1124
PspGI CCWGG 5 cut(s) 377, 423, 824, 862, 2203
PspN4I GGNNCC 8 cut(s) 64, 142, 207, 930, 985, 1218, 2067, 2416
PspPI GGNCC 3 cut(s) 206, 479, 2066
PspPPI RGGWCCY 2 cut(s) 206, 2066
PstI CTGCAG 2 cut(s) 1360, 1770
PstNI CAGNNNCTG 1 cut(s) 2740
PsuI RGATCY 2 cut(s) 1216, 2580
PvuII CAGCTG 1 cut(s) 2740
RsaI GTAC 5 cut(s) 1196, 1310, 1497, 1808, 2162
RsaNI GTAC 5 cut(s) 1195, 1309, 1496, 1807, 2161
RseI CAYNNNNRTG 5 cut(s) 263, 669, 1323, 2304, 2603
SacI GAGCTC 2 cut(s) 753, 1743
SaqAI TTAA 5 cut(s) 660, 1562, 1614, 1665, 2616
Sau96I GGNCC 3 cut(s) 206, 479, 2066
SchI GAGTC 4 cut(s) 693, 1642, 2348, 2564
ScrFI CCNGG 6 cut(s) 379, 425, 826, 864, 2205, 2612
SduI GDGCHC 6 cut(s) 339, 570, 753, 1348, 1743, 2200
SfaNI GCATC 7 cut(s) 1111, 1327, 1987, 2452, 2785, 2800, 2871
SfcI CTRYAG 2 cut(s) 1356, 1766
SfoI GGCGCC 1 cut(s) 64
SinI GGWCC 3 cut(s) 206, 479, 2066
SmiMI CAYNNNNRTG 5 cut(s) 263, 669, 1323, 2304, 2603
SmlI CTYRAG 2 cut(s) 76, 2448
SmoI CTYRAG 2 cut(s) 76, 2448
SphI GCATGC 1 cut(s) 2177
SseBI AGGCCT 1 cut(s) 2102
SspDI GGCGCC 1 cut(s) 62
SspI AATATT 1 cut(s) 2317
SspMI CTAG 4 cut(s) 6, 1928, 1937, 2889
SstI GAGCTC 2 cut(s) 753, 1743
StuI AGGCCT 1 cut(s) 2102
StyD4I CCNGG 6 cut(s) 377, 423, 824, 862, 2203, 2610
StyI CCWWGG 4 cut(s) 132, 393, 456, 2103
TaaI ACNGT 9 cut(s) 418, 600, 822, 1087, 1167, 1623, 1911, 2371, 2769
TaiI ACGT 3 cut(s) 1714, 2011, 2188
TaqI TCGA 7 cut(s) 1269, 1550, 1651, 2254, 2280, 2536, 2643
TatI WGTACW 3 cut(s) 1194, 1495, 2160
TauI GCSGC 3 cut(s) 53, 141, 302
TfiI GAWTC 4 cut(s) 329, 384, 1078, 2533
Tru1I TTAA 5 cut(s) 660, 1562, 1614, 1665, 2616
Tru9I TTAA 5 cut(s) 660, 1562, 1614, 1665, 2616
TscAI CASTG 7 cut(s) 265, 421, 481, 694, 1230, 1628, 2791
TseFI GTSAC 4 cut(s) 685, 998, 1577, 1843
Tsp45I GTSAC 4 cut(s) 685, 998, 1577, 1843
TspGWI ACGGA 2 cut(s) 133, 919
TspRI CASTG 7 cut(s) 265, 421, 481, 694, 1230, 1628, 2791
Van91I CCANNNNNTGG 4 cut(s) 782, 1148, 1696, 2566
VpaK11BI GGWCC 3 cut(s) 206, 479, 2066
XagI CCTNNNNNAGG 1 cut(s) 486
XapI RAATTY 1 cut(s) 1610
XceI RCATGY 2 cut(s) 668, 2177
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XmiI GTMKAC 3 cut(s) 405, 1485, 1888
XmnI GAANNNNTTC 3 cut(s) 254, 2247, 2436
XspI CTAG 4 cut(s) 6, 1928, 1937, 2889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.