RLG00000033758

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000109
Physical Location & Seq
Forward (+)
31802611 .. 31803637
1027 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033758

Sequence Viewer

Length: 693 bp
ATGGTTGATCACGTCACTGCTCGTCTTGTTGCAGCCTTGGCTATCTTGGAGGACGGTCACACGTCCCTTGGCCCGGCCGGCGCTGCTGCTGTGTCCTCCCATCACTTTGGGGGGCTTGGTAATCATCTGTCTGTACGGGCACACCAGAACCATTTTGTTTTTGAATTCTCCCAAATAGAGGACTGGTTAAGGATCGTTGACGGCAATCCGTGGTTCTTTGGCAAGTGGGCGCTTGCTATGGAGGAATTTGATAGTCTGCAGGATGTTGTTGCTGTCTCGCTTCCCTCGATGTCGGTTTGGGTGAAGATCATGGGACTACCTCCAGCTTTGTCACTGAGGGAGCGGTGGCGATCATTGGAGCCACGTTGGGGGAGGTTGTGCACCTTGACAAGTCGGGAATTTGAAATGGTACGAACGCCTTATTGGTTTATCTTGTGTTTGTGGAATGATGGAACACCAACGATCGGGGTGTACTGGGGGGCCCCAGAGGCAGCGGTTGTCTCTGTCATCCATAACCCTAAACCTAACTTAGCTAGGGTTTCATCATCGGCGAGTCAGCTAGCTCTGAGTCTAGCGGAGGTTGATAGAAATGTTGATATTCCCATTACTGGGAAGAATAGATCTGCTGTGGTGGCTTTGGTGCAATACTCAAAGCGTAAGAGAGCAGATGTTGTGCTCCCTCCCACTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

231

Amino Acids

25.47

Weight (kDa)

7.1

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 343
AciI CCGC 3 cut(s) 343, 494, 575
AclWI GGATC 1 cut(s) 200
AcoI YGGCCR 1 cut(s) 75
AcsI RAATTY 3 cut(s) 164, 245, 398
AfaI GTAC 3 cut(s) 135, 411, 473
AfiI CCNNNNNNNGG 6 cut(s) 73, 178, 368, 464, 608, 609
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 2 cut(s) 164, 404
AjiI CACGTC 2 cut(s) 13, 63
AjuI GAANNNNNNNTTGG 2 cut(s) 406, 438
AluBI AGCT 4 cut(s) 326, 533, 559, 563
AluI AGCT 4 cut(s) 326, 533, 559, 563
Alw21I GWGCWC 2 cut(s) 383, 678
Alw26I GTCTC 2 cut(s) 280, 505
Alw44I GTGCAC 1 cut(s) 379
AlwI GGATC 1 cut(s) 200
AoxI GGCC 3 cut(s) 70, 75, 480
ApaI GGGCCC 1 cut(s) 484
ApaLI GTGCAC 1 cut(s) 379
ApeKI GCWGC 4 cut(s) 32, 83, 86, 491
ApoI RAATTY 3 cut(s) 164, 245, 398
AspLEI GCGC 2 cut(s) 83, 232
AspS9I GGNCC 3 cut(s) 71, 480, 481
AsuC2I CCSGG 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 313
AsuNHI GCTAGC 1 cut(s) 559
BaeGI GKGCMC 3 cut(s) 142, 383, 484
BanII GRGCYC 1 cut(s) 484
Bbv12I GWGCWC 2 cut(s) 383, 678
BbvI GCAGC 4 cut(s) 44, 70, 73, 503
BccI CCATC 2 cut(s) 108, 443
BceAI ACGGC 1 cut(s) 217
BclI TGATCA 1 cut(s) 7
BcnI CCSGG 1 cut(s) 74
BcoDI GTCTC 2 cut(s) 280, 505
BfaI CTAG 3 cut(s) 534, 560, 572
BfmI CTRYAG 1 cut(s) 257
BfoI RGCGCY 2 cut(s) 84, 233
BglI GCCNNNNNGGC 2 cut(s) 78, 488
BglII AGATCT 1 cut(s) 620
BisI GCNGC 4 cut(s) 33, 84, 87, 492
BlsI GCNGC 4 cut(s) 34, 85, 88, 493
Bme1390I CCNGG 1 cut(s) 74
BmgBI CACGTC 2 cut(s) 13, 63
BmgT120I GGNCC 3 cut(s) 71, 480, 481
BmiI GGNNCC 4 cut(s) 360, 481, 482, 483
BmrFI CCNGG 1 cut(s) 74
BmrI ACTGGG 2 cut(s) 484, 618
BmtI GCTAGC 1 cut(s) 563
BmuI ACTGGG 2 cut(s) 484, 618
BpmI CTGGAG 1 cut(s) 306
BpuMI CCSGG 1 cut(s) 74
BsaJI CCNNGG 3 cut(s) 36, 67, 209
Bsc4I CCNNNNNNNGG 6 cut(s) 73, 178, 368, 464, 608, 609
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 3 cut(s) 188, 479, 613
BseDI CCNNGG 3 cut(s) 36, 67, 209
BseGI GGATG 2 cut(s) 268, 507
BseLI CCNNNNNNNGG 6 cut(s) 73, 178, 368, 464, 608, 609
BseMII CTCAG 2 cut(s) 326, 557
BseNI ACTGG 3 cut(s) 188, 479, 613
BseSI GKGCMC 3 cut(s) 142, 383, 484
BseX3I CGGCCG 1 cut(s) 75
BseXI GCAGC 4 cut(s) 44, 70, 73, 503
Bsh1285I CGRYCG 2 cut(s) 78, 465
BshFI GGCC 3 cut(s) 72, 77, 482
BsiEI CGRYCG 2 cut(s) 78, 465
BsiHKAI GWGCWC 2 cut(s) 383, 678
BsiSI CCGG 2 cut(s) 74, 78
BslFI GGGAC 2 cut(s) 49, 327
BslI CCNNNNNNNGG 6 cut(s) 73, 178, 368, 464, 608, 609
BsmAI GTCTC 2 cut(s) 280, 505
BsmFI GGGAC 2 cut(s) 49, 327
BsnI GGCC 3 cut(s) 72, 77, 482
Bsp120I GGGCCC 1 cut(s) 480
Bsp1286I GDGCHC 4 cut(s) 142, 383, 484, 678
Bsp143I GATC 6 cut(s) 7, 192, 306, 350, 462, 620
BspACI CCGC 3 cut(s) 343, 494, 575
BspANI GGCC 3 cut(s) 72, 77, 482
BspCNI CTCAG 2 cut(s) 327, 558
BspLI GGNNCC 4 cut(s) 360, 481, 482, 483
BspMAI CTGCAG 1 cut(s) 261
BspOI GCTAGC 1 cut(s) 563
BspPI GGATC 1 cut(s) 200
BsrBI CCGCTC 1 cut(s) 343
BsrFI RCCGGY 1 cut(s) 77
BsrI ACTGG 3 cut(s) 188, 479, 613
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 3 cut(s) 36, 67, 209
BssMI GATC 6 cut(s) 7, 192, 306, 350, 462, 620
BssT1I CCWWGG 2 cut(s) 36, 67
Bst4CI ACNGT 1 cut(s) 56
BstC8I GCNNGC 3 cut(s) 79, 234, 561
BstDEI CTNAG 3 cut(s) 335, 529, 566
BstDSI CCRYGG 1 cut(s) 209
BstF5I GGATG 2 cut(s) 268, 507
BstH2I RGCGCY 2 cut(s) 84, 233
BstHHI GCGC 2 cut(s) 83, 232
BstKTI GATC 6 cut(s) 10, 195, 309, 353, 465, 623
BstMAI GTCTC 2 cut(s) 280, 505
BstMBI GATC 6 cut(s) 7, 192, 306, 350, 462, 620
BstMCI CGRYCG 2 cut(s) 78, 465
BstMWI GCNNNNNNNGC 5 cut(s) 38, 78, 83, 488, 632
BstSCI CCNGG 1 cut(s) 72
BstSFI CTRYAG 1 cut(s) 257
BstSLI GKGCMC 3 cut(s) 142, 383, 484
BstV1I GCAGC 4 cut(s) 44, 70, 73, 503
BstX2I RGATCY 1 cut(s) 620
BstXI CCANNNNNNTGG 1 cut(s) 107
BstYI RGATCY 1 cut(s) 620
BstZI CGGCCG 1 cut(s) 75
BsuRI GGCC 3 cut(s) 72, 77, 482
BtgI CCRYGG 1 cut(s) 209
BtrI CACGTC 2 cut(s) 13, 63
BtsCI GGATG 2 cut(s) 268, 507
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 2 cut(s) 15, 332
Cac8I GCNNGC 3 cut(s) 79, 234, 561
CfoI GCGC 2 cut(s) 83, 232
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 3 cut(s) 71, 480, 481
Csp6I GTAC 3 cut(s) 134, 410, 472
CviAII CATG 1 cut(s) 310
CviQI GTAC 3 cut(s) 134, 410, 472
DdeI CTNAG 3 cut(s) 335, 529, 566
DpnI GATC 6 cut(s) 9, 194, 308, 352, 464, 622
DpnII GATC 6 cut(s) 7, 192, 306, 350, 462, 620
EaeI YGGCCR 1 cut(s) 75
EagI CGGCCG 1 cut(s) 75
EclXI CGGCCG 1 cut(s) 75
Eco130I CCWWGG 2 cut(s) 36, 67
Eco24I GRGCYC 1 cut(s) 484
Eco52I CGGCCG 1 cut(s) 75
EcoO109I RGGNCCY 2 cut(s) 480, 481
EcoRI GAATTC 1 cut(s) 164
EcoT14I CCWWGG 2 cut(s) 36, 67
EcoT38I GRGCYC 1 cut(s) 484
ErhI CCWWGG 2 cut(s) 36, 67
FaeI CATG 1 cut(s) 313
FaiI YATR 3 cut(s) 239, 311, 513
FaqI GGGAC 2 cut(s) 49, 327
FatI CATG 1 cut(s) 309
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 4 cut(s) 33, 84, 87, 492
FokI GGATG 2 cut(s) 275, 494
FriOI GRGCYC 1 cut(s) 484
Fsp4HI GCNGC 4 cut(s) 33, 84, 87, 492
FspBI CTAG 3 cut(s) 534, 560, 572
GlaI GCGC 2 cut(s) 82, 231
GluI GCNGC 4 cut(s) 33, 84, 87, 492
GsuI CTGGAG 1 cut(s) 306
HaeII RGCGCY 2 cut(s) 84, 233
HaeIII GGCC 3 cut(s) 72, 77, 482
HapII CCGG 2 cut(s) 74, 78
HhaI GCGC 2 cut(s) 83, 232
Hin1II CATG 1 cut(s) 313
Hin6I GCGC 2 cut(s) 81, 230
HinP1I GCGC 2 cut(s) 81, 230
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 2 cut(s) 553, 568
HpaII CCGG 2 cut(s) 74, 78
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 3 cut(s) 199, 381, 472
Hpy188I TCNGA 1 cut(s) 567
Hpy188III TCNNGA 1 cut(s) 395
Hpy8I GTNNAC 3 cut(s) 199, 381, 472
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4IV ACGT 3 cut(s) 12, 62, 364
HpyCH4V TGCA 4 cut(s) 32, 259, 381, 643
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 78, 83, 488, 632
HpyF3I CTNAG 3 cut(s) 335, 529, 566
HpySE526I ACGT 3 cut(s) 12, 62, 364
Hsp92II CATG 1 cut(s) 313
HspAI GCGC 2 cut(s) 81, 230
KroI GCCGGC 1 cut(s) 77
KroNI GCCGGC 1 cut(s) 79
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 6 cut(s) 7, 192, 306, 350, 462, 620
LmnI GCTCC 3 cut(s) 340, 358, 681
LpnPI CCDG 9 cut(s) 87, 91, 158, 169, 245, 336, 460, 498, 594
Lsp1109I GCAGC 4 cut(s) 44, 70, 73, 503
MaeI CTAG 3 cut(s) 534, 560, 572
MaeII ACGT 3 cut(s) 12, 62, 364
MaeIII GTNAC 3 cut(s) 13, 56, 330
MalI GATC 6 cut(s) 9, 194, 308, 352, 464, 622
MbiI CCGCTC 1 cut(s) 343
MboI GATC 6 cut(s) 7, 192, 306, 350, 462, 620
MboII GAAGA 2 cut(s) 316, 625
MflI RGATCY 1 cut(s) 620
MhlI GDGCHC 4 cut(s) 142, 383, 484, 678
MluCI AATT 4 cut(s) 164, 245, 398, 688
MlyI GAGTC 2 cut(s) 562, 577
MroNI GCCGGC 1 cut(s) 77
MseI TTAA 1 cut(s) 188
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 2 cut(s) 74, 78
MspR9I CCNGG 1 cut(s) 74
MwoI GCNNNNNNNGC 5 cut(s) 38, 78, 83, 488, 632
NaeI GCCGGC 1 cut(s) 79
NciI CCSGG 1 cut(s) 74
NdeII GATC 6 cut(s) 7, 192, 306, 350, 462, 620
NgoMIV GCCGGC 1 cut(s) 77
NheI GCTAGC 1 cut(s) 559
NlaIII CATG 1 cut(s) 313
NlaIV GGNNCC 4 cut(s) 360, 481, 482, 483
NmuCI GTSAC 3 cut(s) 13, 56, 330
PcsI WCGNNNNNNNCGW 1 cut(s) 284
PdiI GCCGGC 1 cut(s) 79
PkrI GCNGC 4 cut(s) 34, 85, 88, 493
Ple19I CGATCG 1 cut(s) 465
PleI GAGTC 2 cut(s) 561, 576
PpsI GAGTC 2 cut(s) 561, 576
PspN4I GGNNCC 4 cut(s) 360, 481, 482, 483
PspOMI GGGCCC 1 cut(s) 480
PspPI GGNCC 3 cut(s) 71, 480, 481
PstI CTGCAG 1 cut(s) 261
PsuI RGATCY 1 cut(s) 620
PvuI CGATCG 1 cut(s) 465
RsaI GTAC 3 cut(s) 135, 411, 473
RsaNI GTAC 3 cut(s) 134, 410, 472
SaqAI TTAA 1 cut(s) 188
SatI GCNGC 4 cut(s) 33, 84, 87, 492
Sau3AI GATC 6 cut(s) 7, 192, 306, 350, 462, 620
Sau96I GGNCC 3 cut(s) 71, 480, 481
SchI GAGTC 2 cut(s) 562, 577
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 4 cut(s) 142, 383, 484, 678
SfcI CTRYAG 1 cut(s) 257
Sse9I AATT 4 cut(s) 164, 245, 398, 688
SsiI CCGC 3 cut(s) 343, 494, 575
SspMI CTAG 3 cut(s) 534, 560, 572
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 2 cut(s) 36, 67
TaaI ACNGT 1 cut(s) 56
TaiI ACGT 3 cut(s) 15, 65, 367
TaqI TCGA 1 cut(s) 287
TasI AATT 4 cut(s) 164, 245, 398, 688
TatI WGTACW 1 cut(s) 471
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TscAI CASTG 2 cut(s) 22, 339
TseFI GTSAC 3 cut(s) 13, 56, 330
TseI GCWGC 4 cut(s) 32, 83, 86, 491
Tsp45I GTSAC 3 cut(s) 13, 56, 330
TspDTI ATGAA 1 cut(s) 531
TspGWI ACGGA 1 cut(s) 198
TspRI CASTG 2 cut(s) 22, 339
VneI GTGCAC 1 cut(s) 379
XapI RAATTY 3 cut(s) 164, 245, 398
XspI CTAG 3 cut(s) 534, 560, 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.