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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 240 |
| AcuI | CTGAAG | 1 cut(s) | 284 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 190, 223, 500 |
| AgsI | TTSAA | 3 cut(s) | 62, 363, 443 |
| AjnI | CCWGG | 1 cut(s) | 493 |
| AluBI | AGCT | 2 cut(s) | 209, 355 |
| AluI | AGCT | 2 cut(s) | 209, 355 |
| Alw21I | GWGCWC | 3 cut(s) | 211, 357, 388 |
| Alw26I | GTCTC | 1 cut(s) | 218 |
| Alw44I | GTGCAC | 1 cut(s) | 384 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 278 |
| AoxI | GGCC | 1 cut(s) | 502 |
| ApaLI | GTGCAC | 1 cut(s) | 384 |
| ApoI | RAATTY | 1 cut(s) | 240 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 396 |
| AspLEI | GCGC | 1 cut(s) | 196 |
| AspS9I | GGNCC | 1 cut(s) | 503 |
| AsuC2I | CCSGG | 1 cut(s) | 204 |
| AsuII | TTCGAA | 1 cut(s) | 408 |
| BaeGI | GKGCMC | 1 cut(s) | 388 |
| BanII | GRGCYC | 2 cut(s) | 211, 357 |
| Bbv12I | GWGCWC | 3 cut(s) | 211, 357, 388 |
| BccI | CCATC | 2 cut(s) | 407, 478 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 161, 195 |
| BciT130I | CCWGG | 1 cut(s) | 495 |
| BcnI | CCSGG | 1 cut(s) | 204 |
| BcoDI | GTCTC | 1 cut(s) | 218 |
| BfaI | CTAG | 1 cut(s) | 389 |
| BfoI | RGCGCY | 1 cut(s) | 197 |
| BglII | AGATCT | 1 cut(s) | 248 |
| Bme1390I | CCNGG | 2 cut(s) | 204, 495 |
| BmgT120I | GGNCC | 1 cut(s) | 503 |
| BmrFI | CCNGG | 2 cut(s) | 204, 495 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 198, 230 |
| Bpu14I | TTCGAA | 1 cut(s) | 408 |
| BpuMI | CCSGG | 1 cut(s) | 204 |
| BsaJI | CCNNGG | 2 cut(s) | 188, 348 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 190, 223, 500 |
| Bse1I | ACTGG | 1 cut(s) | 272 |
| BseBI | CCWGG | 1 cut(s) | 495 |
| BseDI | CCNNGG | 2 cut(s) | 188, 348 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 190, 223, 500 |
| BseMII | CTCAG | 2 cut(s) | 213, 524 |
| BseNI | ACTGG | 1 cut(s) | 272 |
| BseSI | GKGCMC | 1 cut(s) | 388 |
| Bsh1285I | CGRYCG | 1 cut(s) | 474 |
| BshFI | GGCC | 1 cut(s) | 504 |
| BsiEI | CGRYCG | 1 cut(s) | 474 |
| BsiHKAI | GWGCWC | 3 cut(s) | 211, 357, 388 |
| BsiSI | CCGG | 1 cut(s) | 204 |
| BslFI | GGGAC | 1 cut(s) | 266 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 190, 223, 500 |
| BsmAI | GTCTC | 1 cut(s) | 218 |
| BsmBI | CGTCTC | 1 cut(s) | 218 |
| BsmFI | GGGAC | 1 cut(s) | 266 |
| BsnI | GGCC | 1 cut(s) | 504 |
| Bsp119I | TTCGAA | 1 cut(s) | 408 |
| Bsp1286I | GDGCHC | 3 cut(s) | 211, 357, 388 |
| Bsp143I | GATC | 4 cut(s) | 45, 218, 248, 471 |
| Bsp19I | CCATGG | 1 cut(s) | 188 |
| BspANI | GGCC | 1 cut(s) | 504 |
| BspCNI | CTCAG | 2 cut(s) | 214, 525 |
| BspT104I | TTCGAA | 1 cut(s) | 408 |
| BsrI | ACTGG | 1 cut(s) | 272 |
| BssECI | CCNNGG | 2 cut(s) | 188, 348 |
| BssMI | GATC | 4 cut(s) | 45, 218, 248, 471 |
| BssT1I | CCWWGG | 2 cut(s) | 188, 348 |
| Bst2UI | CCWGG | 1 cut(s) | 495 |
| Bst4CI | ACNGT | 1 cut(s) | 16 |
| Bst6I | CTCTTC | 1 cut(s) | 303 |
| BstBI | TTCGAA | 1 cut(s) | 408 |
| BstDEI | CTNAG | 2 cut(s) | 222, 533 |
| BstDSI | CCRYGG | 1 cut(s) | 188 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 498 |
| BstH2I | RGCGCY | 1 cut(s) | 197 |
| BstHHI | GCGC | 1 cut(s) | 196 |
| BstKTI | GATC | 4 cut(s) | 48, 221, 251, 474 |
| BstMAI | GTCTC | 1 cut(s) | 218 |
| BstMBI | GATC | 4 cut(s) | 45, 218, 248, 471 |
| BstMCI | CGRYCG | 1 cut(s) | 474 |
| BstNI | CCWGG | 1 cut(s) | 495 |
| BstSCI | CCNGG | 2 cut(s) | 202, 493 |
| BstSLI | GKGCMC | 1 cut(s) | 388 |
| BstX2I | RGATCY | 1 cut(s) | 248 |
| BstYI | RGATCY | 1 cut(s) | 248 |
| BsuRI | GGCC | 1 cut(s) | 504 |
| BtgI | CCRYGG | 1 cut(s) | 188 |
| CaiI | CAGNNNCTG | 1 cut(s) | 278 |
| CfoI | GCGC | 1 cut(s) | 196 |
| Cfr13I | GGNCC | 1 cut(s) | 503 |
| CviAII | CATG | 2 cut(s) | 118, 189 |
| CviJI | RGCY | 3 cut(s) | 209, 355, 504 |
| CviKI_1 | RGCY | 3 cut(s) | 209, 355, 504 |
| DdeI | CTNAG | 2 cut(s) | 222, 533 |
| DpnI | GATC | 4 cut(s) | 47, 220, 250, 473 |
| DpnII | GATC | 4 cut(s) | 45, 218, 248, 471 |
| Eam1104I | CTCTTC | 1 cut(s) | 303 |
| EarI | CTCTTC | 1 cut(s) | 303 |
| Ecl136II | GAGCTC | 2 cut(s) | 209, 355 |
| Eco130I | CCWWGG | 2 cut(s) | 188, 348 |
| Eco24I | GRGCYC | 2 cut(s) | 211, 357 |
| Eco32I | GATATC | 1 cut(s) | 539 |
| Eco53kI | GAGCTC | 2 cut(s) | 209, 355 |
| Eco57I | CTGAAG | 1 cut(s) | 284 |
| EcoICRI | GAGCTC | 2 cut(s) | 209, 355 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 498 |
| EcoO109I | RGGNCCY | 1 cut(s) | 503 |
| EcoRII | CCWGG | 1 cut(s) | 493 |
| EcoRV | GATATC | 1 cut(s) | 539 |
| EcoT14I | CCWWGG | 2 cut(s) | 188, 348 |
| EcoT38I | GRGCYC | 2 cut(s) | 211, 357 |
| ErhI | CCWWGG | 2 cut(s) | 188, 348 |
| Esp3I | CGTCTC | 1 cut(s) | 218 |
| FaeI | CATG | 2 cut(s) | 121, 192 |
| FaiI | YATR | 6 cut(s) | 119, 190, 339, 341, 343, 482 |
| FaqI | GGGAC | 1 cut(s) | 266 |
| FatI | CATG | 2 cut(s) | 117, 188 |
| FriOI | GRGCYC | 2 cut(s) | 211, 357 |
| FspBI | CTAG | 1 cut(s) | 389 |
| GlaI | GCGC | 1 cut(s) | 195 |
| HaeII | RGCGCY | 1 cut(s) | 197 |
| HaeIII | GGCC | 1 cut(s) | 504 |
| HapII | CCGG | 1 cut(s) | 204 |
| HhaI | GCGC | 1 cut(s) | 196 |
| Hin1II | CATG | 2 cut(s) | 121, 192 |
| Hin6I | GCGC | 1 cut(s) | 194 |
| HinP1I | GCGC | 1 cut(s) | 194 |
| HincII | GTYRAC | 1 cut(s) | 103 |
| HindII | GTYRAC | 1 cut(s) | 103 |
| HinfI | GANTC | 5 cut(s) | 83, 163, 227, 306, 443 |
| HpaII | CCGG | 1 cut(s) | 204 |
| Hpy166II | GTNNAC | 3 cut(s) | 73, 103, 386 |
| Hpy188I | TCNGA | 4 cut(s) | 218, 223, 476, 534 |
| Hpy188III | TCNNGA | 1 cut(s) | 246 |
| Hpy8I | GTNNAC | 3 cut(s) | 73, 103, 386 |
| HpyAV | CCTTC | 1 cut(s) | 331 |
| HpyCH4III | ACNGT | 1 cut(s) | 16 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 386 |
| HpyF3I | CTNAG | 2 cut(s) | 222, 533 |
| Hsp92II | CATG | 2 cut(s) | 121, 192 |
| HspAI | GCGC | 1 cut(s) | 194 |
| Kzo9I | GATC | 4 cut(s) | 45, 218, 248, 471 |
| LmnI | GCTCC | 3 cut(s) | 206, 350, 352 |
| MaeI | CTAG | 1 cut(s) | 389 |
| MalI | GATC | 4 cut(s) | 47, 220, 250, 473 |
| MboI | GATC | 4 cut(s) | 45, 218, 248, 471 |
| MboII | GAAGA | 6 cut(s) | 251, 290, 404, 422, 425, 539 |
| MflI | RGATCY | 1 cut(s) | 248 |
| MhlI | GDGCHC | 3 cut(s) | 211, 357, 388 |
| MluCI | AATT | 1 cut(s) | 240 |
| MlyI | GAGTC | 3 cut(s) | 172, 221, 300 |
| MnlI | CCTC | 4 cut(s) | 52, 70, 217, 273 |
| MroXI | GAANNNNTTC | 1 cut(s) | 396 |
| MseI | TTAA | 4 cut(s) | 27, 114, 150, 559 |
| MspI | CCGG | 1 cut(s) | 204 |
| MspR9I | CCNGG | 2 cut(s) | 204, 495 |
| MvaI | CCWGG | 1 cut(s) | 495 |
| NciI | CCSGG | 1 cut(s) | 204 |
| NcoI | CCATGG | 1 cut(s) | 188 |
| NdeII | GATC | 4 cut(s) | 45, 218, 248, 471 |
| NlaIII | CATG | 2 cut(s) | 121, 192 |
| NspV | TTCGAA | 1 cut(s) | 408 |
| PdmI | GAANNNNTTC | 1 cut(s) | 396 |
| PfeI | GAWTC | 2 cut(s) | 83, 443 |
| Ple19I | CGATCG | 1 cut(s) | 474 |
| PleI | GAGTC | 3 cut(s) | 171, 221, 300 |
| PpsI | GAGTC | 3 cut(s) | 171, 221, 300 |
| Psp124BI | GAGCTC | 2 cut(s) | 211, 357 |
| Psp6I | CCWGG | 1 cut(s) | 493 |
| PspGI | CCWGG | 1 cut(s) | 493 |
| PspPI | GGNCC | 1 cut(s) | 503 |
| PstNI | CAGNNNCTG | 1 cut(s) | 278 |
| PsuI | RGATCY | 1 cut(s) | 248 |
| PvuI | CGATCG | 1 cut(s) | 474 |
| SacI | GAGCTC | 2 cut(s) | 211, 357 |
| SaqAI | TTAA | 4 cut(s) | 27, 114, 150, 559 |
| Sau3AI | GATC | 4 cut(s) | 45, 218, 248, 471 |
| Sau96I | GGNCC | 1 cut(s) | 503 |
| SchI | GAGTC | 3 cut(s) | 172, 221, 300 |
| ScrFI | CCNGG | 2 cut(s) | 204, 495 |
| SduI | GDGCHC | 3 cut(s) | 211, 357, 388 |
| SetI | ASST | 5 cut(s) | 44, 69, 81, 211, 357 |
| SfuI | TTCGAA | 1 cut(s) | 408 |
| Sse9I | AATT | 1 cut(s) | 240 |
| SspMI | CTAG | 1 cut(s) | 389 |
| SstI | GAGCTC | 2 cut(s) | 211, 357 |
| StyD4I | CCNGG | 2 cut(s) | 202, 493 |
| StyI | CCWWGG | 2 cut(s) | 188, 348 |
| TaaI | ACNGT | 1 cut(s) | 16 |
| TaqI | TCGA | 3 cut(s) | 44, 408, 470 |
| TasI | AATT | 1 cut(s) | 240 |
| TfiI | GAWTC | 2 cut(s) | 83, 443 |
| Tru1I | TTAA | 4 cut(s) | 27, 114, 150, 559 |
| Tru9I | TTAA | 4 cut(s) | 27, 114, 150, 559 |
| TspDTI | ATGAA | 1 cut(s) | 99 |
| TspGWI | ACGGA | 1 cut(s) | 392 |
| VneI | GTGCAC | 1 cut(s) | 384 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 498 |
| XapI | RAATTY | 1 cut(s) | 240 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 31 |
| XmnI | GAANNNNTTC | 1 cut(s) | 396 |
| XspI | CTAG | 1 cut(s) | 389 |