Rh7DG233800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000109
Physical Location & Seq
Forward (+)
23264361 .. 23265914
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG233800.1

Sequence Viewer

Length: 429 bp
ATGTCTGGAACCGAAGTTGTGGCTGGGGCACAGCATCAGGCCGAGCGTGTGGAGGTGGGTGGTTCTAACCCTAGGTCGAACCCGCCCCCTGTGTTTGGCTTTGTGGGGTTAGGTTCCACATCGGGGCCAACGCCTCACACTACTGCAGGATCTCTGAGCAGTAGCGTGGCTACTCCTACTGTTATTCGATCCCCTTCTGGTTTGCTTCTTTCTGCACCTGGAAATGCTATAGAGGAGCTAGCTAAGAAAGTGGAGCCTCCTCGTCCCCAAGCGGCGCTTCCAGTGCTCCCTTCCCCAAGTCGGCAACCGGTGGAGAAACCTCTGGTCAATGGGACTAAAAGGCCGGCTGAGGCTAGGGAGTTGGTGACATACAGTAAGAAAGCCCGAGCAGTGGTTCCTGTTCCTATCACTGAACAGAAAGAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

14.65

Weight (kDa)

9.77

Isoelectric Point (pI)

64.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 83, 272
AclWI GGATC 2 cut(s) 157, 183
AfiI CCNNNNNNNGG 4 cut(s) 95, 123, 300, 391
AgeI ACCGGT 1 cut(s) 307
AjnI CCWGG 1 cut(s) 217
AjuI GAANNNNNNNTTGG 2 cut(s) 261, 293
AluBI AGCT 2 cut(s) 238, 242
AluI AGCT 2 cut(s) 238, 242
Alw21I GWGCWC 1 cut(s) 288
AlwI GGATC 2 cut(s) 157, 183
Ama87I CYCGRG 1 cut(s) 384
AoxI GGCC 3 cut(s) 39, 125, 341
AsiGI ACCGGT 1 cut(s) 307
AspA2I CCTAGG 1 cut(s) 71
AspLEI GCGC 1 cut(s) 277
AspS9I GGNCC 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 376
AsuNHI GCTAGC 1 cut(s) 238
AvaI CYCGRG 1 cut(s) 384
AvrII CCTAGG 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 288
BbvCI CCTCAGC 1 cut(s) 348
BciT130I CCWGG 1 cut(s) 219
BfaI CTAG 3 cut(s) 72, 239, 354
BfmI CTRYAG 2 cut(s) 144, 228
BfoI RGCGCY 1 cut(s) 278
BisI GCNGC 1 cut(s) 273
BlnI CCTAGG 1 cut(s) 71
BlsI GCNGC 1 cut(s) 274
Bme1390I CCNGG 1 cut(s) 219
BmeT110I CYCGRG 1 cut(s) 384
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 5 cut(s) 10, 115, 126, 255, 396
BmrFI CCNGG 1 cut(s) 219
BmsI GCATC 1 cut(s) 43
BmtI GCTAGC 1 cut(s) 242
Bpu10I CCTNAGC 1 cut(s) 348
BsaJI CCNNGG 1 cut(s) 71
BsaWI WCCGGW 1 cut(s) 307
Bsc4I CCNNNNNNNGG 4 cut(s) 95, 123, 300, 391
Bse118I RCCGGY 2 cut(s) 307, 343
Bse1I ACTGG 1 cut(s) 281
BseBI CCWGG 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 71
BseLI CCNNNNNNNGG 4 cut(s) 95, 123, 300, 391
BseMII CTCAG 2 cut(s) 146, 339
BseNI ACTGG 1 cut(s) 281
BseRI GAGGAG 2 cut(s) 248, 249
BseSI GKGCMC 1 cut(s) 31
BseYI CCCAGC 1 cut(s) 23
BsgI GTGCAG 1 cut(s) 198
BshFI GGCC 3 cut(s) 41, 127, 343
BshTI ACCGGT 1 cut(s) 307
BsiHKAI GWGCWC 1 cut(s) 288
BsiHKCI CYCGRG 1 cut(s) 384
BsiSI CCGG 2 cut(s) 308, 344
BslFI GGGAC 2 cut(s) 249, 346
BslI CCNNNNNNNGG 4 cut(s) 95, 123, 300, 391
BsmFI GGGAC 2 cut(s) 249, 346
BsnI GGCC 3 cut(s) 41, 127, 343
BsoBI CYCGRG 1 cut(s) 384
Bsp1286I GDGCHC 2 cut(s) 31, 288
Bsp143I GATC 2 cut(s) 149, 188
BspACI CCGC 2 cut(s) 83, 272
BspANI GGCC 3 cut(s) 41, 127, 343
BspCNI CTCAG 2 cut(s) 147, 340
BspLI GGNNCC 5 cut(s) 10, 115, 126, 255, 396
BspMAI CTGCAG 1 cut(s) 148
BspOI GCTAGC 1 cut(s) 242
BspPI GGATC 2 cut(s) 157, 183
BsrFI RCCGGY 2 cut(s) 307, 343
BsrI ACTGG 1 cut(s) 281
BssAI RCCGGY 2 cut(s) 307, 343
BssECI CCNNGG 1 cut(s) 71
BssMI GATC 2 cut(s) 149, 188
BssT1I CCWWGG 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 219
Bst4CI ACNGT 2 cut(s) 181, 374
BstC8I GCNNGC 2 cut(s) 240, 345
BstDEI CTNAG 3 cut(s) 155, 243, 348
BstH2I RGCGCY 1 cut(s) 278
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 2 cut(s) 152, 191
BstMBI GATC 2 cut(s) 149, 188
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstNI CCWGG 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 217
BstSFI CTRYAG 2 cut(s) 144, 228
BstSLI GKGCMC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
BsuRI GGCC 3 cut(s) 41, 127, 343
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 3 cut(s) 288, 396, 408
Cac8I GCNNGC 2 cut(s) 240, 345
CfoI GCGC 1 cut(s) 277
Cfr10I RCCGGY 2 cut(s) 307, 343
Cfr13I GGNCC 1 cut(s) 125
CspAI ACCGGT 1 cut(s) 307
DdeI CTNAG 3 cut(s) 155, 243, 348
DpnI GATC 2 cut(s) 151, 190
DpnII GATC 2 cut(s) 149, 188
Eco130I CCWWGG 1 cut(s) 71
Eco88I CYCGRG 1 cut(s) 384
EcoRII CCWGG 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 71
FaiI YATR 2 cut(s) 230, 370
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FaqI GGGAC 2 cut(s) 249, 346
FauI CCCGC 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 3 cut(s) 72, 239, 354
GlaI GCGC 1 cut(s) 276
GluI GCNGC 1 cut(s) 273
GsaI CCCAGC 1 cut(s) 27
HaeII RGCGCY 1 cut(s) 278
HaeIII GGCC 3 cut(s) 41, 127, 343
HapII CCGG 2 cut(s) 308, 344
HhaI GCGC 1 cut(s) 277
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HpaII CCGG 2 cut(s) 308, 344
HphI GGTGA 1 cut(s) 376
Hpy188I TCNGA 1 cut(s) 156
Hpy188III TCNNGA 1 cut(s) 6
HpyAV CCTTC 2 cut(s) 204, 300
HpyCH4III ACNGT 2 cut(s) 181, 374
HpyCH4V TGCA 2 cut(s) 146, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
HpyF3I CTNAG 3 cut(s) 155, 243, 348
HspAI GCGC 1 cut(s) 275
KroI GCCGGC 1 cut(s) 343
KroNI GCCGGC 1 cut(s) 345
Kzo9I GATC 2 cut(s) 149, 188
LmnI GCTCC 3 cut(s) 235, 253, 291
LweI GCATC 1 cut(s) 43
MaeI CTAG 3 cut(s) 72, 239, 354
MaeIII GTNAC 1 cut(s) 364
MalI GATC 2 cut(s) 151, 190
MboI GATC 2 cut(s) 149, 188
MflI RGATCY 1 cut(s) 149
MhlI GDGCHC 2 cut(s) 31, 288
MnlI CCTC 7 cut(s) 46, 144, 226, 267, 270, 330, 343
MroNI GCCGGC 1 cut(s) 343
MspI CCGG 2 cut(s) 308, 344
MspR9I CCNGG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 283
NaeI GCCGGC 1 cut(s) 345
NdeII GATC 2 cut(s) 149, 188
NgoMIV GCCGGC 1 cut(s) 343
NheI GCTAGC 1 cut(s) 238
NlaIV GGNNCC 5 cut(s) 10, 115, 126, 255, 396
NmeAIII GCCGAG 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 364
PdiI GCCGGC 1 cut(s) 345
PinAI ACCGGT 1 cut(s) 307
PkrI GCNGC 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 217
PspFI CCCAGC 1 cut(s) 23
PspGI CCWGG 1 cut(s) 217
PspN4I GGNNCC 5 cut(s) 10, 115, 126, 255, 396
PspPI GGNCC 1 cut(s) 125
PstI CTGCAG 1 cut(s) 148
PsuI RGATCY 1 cut(s) 149
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 2 cut(s) 149, 188
Sau96I GGNCC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 219
SduI GDGCHC 2 cut(s) 31, 288
SetI ASST 7 cut(s) 57, 77, 115, 220, 240, 244, 322
SfaNI GCATC 1 cut(s) 43
SfcI CTRYAG 2 cut(s) 144, 228
SsiI CCGC 2 cut(s) 83, 272
SspMI CTAG 3 cut(s) 72, 239, 354
StyD4I CCNGG 1 cut(s) 217
StyI CCWWGG 1 cut(s) 71
TaaI ACNGT 2 cut(s) 181, 374
TaqI TCGA 2 cut(s) 77, 187
TauI GCSGC 1 cut(s) 275
TscAI CASTG 3 cut(s) 288, 396, 415
TseFI GTSAC 1 cut(s) 364
Tsp45I GTSAC 1 cut(s) 364
TspRI CASTG 3 cut(s) 288, 396, 415
XmaJI CCTAGG 1 cut(s) 71
XspI CTAG 3 cut(s) 72, 239, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.