Rmu_sc0034515.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034515.1
OG0000109
Physical Location & Seq
Reverse (-)
2 .. 595
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034515.1_g000001.1.cds

Sequence Viewer

Length: 537 bp
atgggtttaccaccggccctggttactgagggcactgtggtgctcattggagctaccttaggggagatagtgcatctggacaagactggaattcgcaaggggatggcggcacgggttcgtatccgccaccttctgtcatctccagtgaaacaggttttccctccatccacctttgatttcacctctggggcattttctacggtaaagttcaaatatgagagactggttggtttctgtcgggtctgtggtatgatggaacaccagcggtcgggttgtgctggccctccggaagagcttcttgcggaggtcttggctcaatccacaacacctaaactcttcacttccatggcaaagccgaccccaggttcactccagggcttctcggcttcagctgtagcggcccaagtggccaaaatcccatctccagtccaggcggttagtgagcccatgcaagctactacagatgtcccatctcttagtgggaagaagagaacggcctatgcggccctgatgcaatatactaagtgtaagaagaca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

179

Amino Acids

19.03

Weight (kDa)

9.73

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 286
AciI CCGC 7 cut(s) 107, 124, 265, 302, 398, 434, 503
AcoI YGGCCR 1 cut(s) 408
AcsI RAATTY 1 cut(s) 90
AcuI CTGAAG 1 cut(s) 372
AfiI CCNNNNNNNGG 2 cut(s) 268, 362
AgsI TTSAA 1 cut(s) 211
AjnI CCWGG 4 cut(s) 18, 361, 372, 429
AleI CACNNNNGTG 1 cut(s) 38
AluBI AGCT 4 cut(s) 53, 295, 392, 455
AluI AGCT 4 cut(s) 53, 295, 392, 455
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 214
Aor13HI TCCGGA 1 cut(s) 286
AoxI GGCC 6 cut(s) 15, 280, 399, 408, 495, 504
ApoI RAATTY 1 cut(s) 90
Asp700I GAANNNNTTC 1 cut(s) 294
AspS9I GGNCC 4 cut(s) 16, 281, 400, 505
AsuHPI GGTGA 1 cut(s) 172
AxyI CCTNAGG 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 35
BalI TGGCCA 1 cut(s) 410
BanII GRGCYC 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 45
BccI CCATC 5 cut(s) 97, 172, 247, 427, 478
BceAI ACGGC 1 cut(s) 510
BciT130I CCWGG 4 cut(s) 20, 363, 374, 431
BciVI GTATCC 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 214
BfmI CTRYAG 2 cut(s) 393, 459
BfuI GTATCC 1 cut(s) 131
BglI GCCNNNNNGGC 2 cut(s) 407, 503
BisI GCNGC 3 cut(s) 108, 399, 504
BlsI GCNGC 3 cut(s) 109, 400, 505
Bme1390I CCNGG 4 cut(s) 20, 363, 374, 431
BmgT120I GGNCC 4 cut(s) 16, 281, 400, 505
BmrFI CCNGG 4 cut(s) 20, 363, 374, 431
BmsI GCATC 2 cut(s) 82, 501
BpmI CTGGAG 3 cut(s) 126, 356, 408
BsaJI CCNNGG 4 cut(s) 18, 345, 361, 373
BsaWI WCCGGW 1 cut(s) 286
Bsc4I CCNNNNNNNGG 2 cut(s) 268, 362
Bse118I RCCGGY 1 cut(s) 13
Bse1I ACTGG 4 cut(s) 91, 143, 228, 425
Bse21I CCTNAGG 1 cut(s) 58
BseAI TCCGGA 1 cut(s) 286
BseBI CCWGG 4 cut(s) 20, 363, 374, 431
BseDI CCNNGG 4 cut(s) 18, 345, 361, 373
BseGI GGATG 2 cut(s) 108, 164
BseLI CCNNNNNNNGG 2 cut(s) 268, 362
BseMII CTCAG 1 cut(s) 18
BseNI ACTGG 4 cut(s) 91, 143, 228, 425
BseSI GKGCMC 1 cut(s) 35
Bsh1285I CGRYCG 1 cut(s) 269
BshFI GGCC 6 cut(s) 17, 282, 401, 410, 497, 506
BsiEI CGRYCG 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 45
BsiSI CCGG 2 cut(s) 14, 287
BslFI GGGAC 1 cut(s) 452
BslI CCNNNNNNNGG 2 cut(s) 268, 362
BsmAI GTCTC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 452
BsnI GGCC 6 cut(s) 17, 282, 401, 410, 497, 506
Bsp1286I GDGCHC 3 cut(s) 35, 45, 447
Bsp13I TCCGGA 1 cut(s) 286
Bsp19I CCATGG 1 cut(s) 345
BspACI CCGC 7 cut(s) 107, 124, 265, 302, 398, 434, 503
BspANI GGCC 6 cut(s) 17, 282, 401, 410, 497, 506
BspCNI CTCAG 1 cut(s) 19
BspEI TCCGGA 1 cut(s) 286
BspQI GCTCTTC 1 cut(s) 285
BsrFI RCCGGY 1 cut(s) 13
BsrI ACTGG 4 cut(s) 91, 143, 228, 425
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 4 cut(s) 18, 345, 361, 373
BssT1I CCWWGG 1 cut(s) 345
Bst2UI CCWGG 4 cut(s) 20, 363, 374, 431
Bst4CI ACNGT 2 cut(s) 37, 202
Bst6I CTCTTC 3 cut(s) 285, 341, 482
BstC8I GCNNGC 2 cut(s) 280, 453
BstDEI CTNAG 4 cut(s) 27, 58, 476, 522
BstDSI CCRYGG 1 cut(s) 345
BstF5I GGATG 2 cut(s) 108, 164
BstMAI GTCTC 1 cut(s) 214
BstMCI CGRYCG 1 cut(s) 269
BstMWI GCNNNNNNNGC 3 cut(s) 398, 407, 503
BstNI CCWGG 4 cut(s) 20, 363, 374, 431
BstSCI CCNGG 4 cut(s) 18, 361, 372, 429
BstSFI CTRYAG 2 cut(s) 393, 459
BstSLI GKGCMC 1 cut(s) 35
Bsu36I CCTNAGG 1 cut(s) 58
BsuI GTATCC 1 cut(s) 131
BsuRI GGCC 6 cut(s) 17, 282, 401, 410, 497, 506
BtgI CCRYGG 1 cut(s) 345
BtsCI GGATG 2 cut(s) 108, 164
BtsIMutI CAGTG 2 cut(s) 33, 150
Cac8I GCNNGC 2 cut(s) 280, 453
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 4 cut(s) 16, 281, 400, 505
CviAII CATG 2 cut(s) 346, 448
DdeI CTNAG 4 cut(s) 27, 58, 476, 522
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 3 cut(s) 285, 341, 482
EarI CTCTTC 3 cut(s) 285, 341, 482
EciI GGCGGA 1 cut(s) 113
Eco130I CCWWGG 1 cut(s) 345
Eco24I GRGCYC 1 cut(s) 447
Eco57I CTGAAG 1 cut(s) 372
Eco81I CCTNAGG 1 cut(s) 58
EcoRI GAATTC 1 cut(s) 90
EcoRII CCWGG 4 cut(s) 18, 361, 372, 429
EcoT14I CCWWGG 1 cut(s) 345
EcoT38I GRGCYC 1 cut(s) 447
ErhI CCWWGG 1 cut(s) 345
FaeI CATG 2 cut(s) 349, 451
FaiI YATR 6 cut(s) 216, 251, 347, 449, 501, 519
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FaqI GGGAC 1 cut(s) 452
FatI CATG 2 cut(s) 345, 447
Fnu4HI GCNGC 3 cut(s) 108, 399, 504
FokI GGATG 2 cut(s) 115, 151
FriOI GRGCYC 1 cut(s) 447
Fsp4HI GCNGC 3 cut(s) 108, 399, 504
GluI GCNGC 3 cut(s) 108, 399, 504
GsuI CTGGAG 3 cut(s) 126, 356, 408
HaeIII GGCC 6 cut(s) 17, 282, 401, 410, 497, 506
HapII CCGG 2 cut(s) 14, 287
Hin1II CATG 2 cut(s) 349, 451
HpaII CCGG 2 cut(s) 14, 287
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 2 cut(s) 8, 368
Hpy188III TCNNGA 2 cut(s) 77, 287
Hpy8I GTNNAC 2 cut(s) 8, 368
HpyAV CCTTC 1 cut(s) 140
HpyCH4III ACNGT 2 cut(s) 37, 202
HpyCH4V TGCA 3 cut(s) 73, 451, 514
HpyF10VI GCNNNNNNNGC 3 cut(s) 398, 407, 503
HpyF3I CTNAG 4 cut(s) 27, 58, 476, 522
Hsp92II CATG 2 cut(s) 349, 451
Kpn2I TCCGGA 1 cut(s) 286
LguI GCTCTTC 1 cut(s) 285
LmnI GCTCC 1 cut(s) 50
LweI GCATC 2 cut(s) 82, 501
MaeIII GTNAC 1 cut(s) 22
MboII GAAGA 4 cut(s) 302, 328, 496, 499
MhlI GDGCHC 3 cut(s) 35, 45, 447
MlsI TGGCCA 1 cut(s) 410
MluCI AATT 1 cut(s) 90
MluNI TGGCCA 1 cut(s) 410
MnlI CCTC 5 cut(s) 22, 171, 193, 294, 298
Mox20I TGGCCA 1 cut(s) 410
MroI TCCGGA 1 cut(s) 286
MroXI GAANNNNTTC 1 cut(s) 294
MscI TGGCCA 1 cut(s) 410
MslI CAYNNNNRTG 2 cut(s) 38, 344
Msp20I TGGCCA 1 cut(s) 410
MspA1I CMGCKG 2 cut(s) 265, 392
MspI CCGG 2 cut(s) 14, 287
MspR9I CCNGG 4 cut(s) 20, 363, 374, 431
MvaI CCWGG 4 cut(s) 20, 363, 374, 431
MwoI GCNNNNNNNGC 3 cut(s) 398, 407, 503
NcoI CCATGG 1 cut(s) 345
NlaIII CATG 2 cut(s) 349, 451
NmeAIII GCCGAG 1 cut(s) 362
OliI CACNNNNGTG 1 cut(s) 38
PciSI GCTCTTC 1 cut(s) 285
PdmI GAANNNNTTC 1 cut(s) 294
PkrI GCNGC 3 cut(s) 109, 400, 505
Psp6I CCWGG 4 cut(s) 18, 361, 372, 429
PspGI CCWGG 4 cut(s) 18, 361, 372, 429
PspPI GGNCC 4 cut(s) 16, 281, 400, 505
PvuII CAGCTG 1 cut(s) 392
RseI CAYNNNNRTG 2 cut(s) 38, 344
SapI GCTCTTC 1 cut(s) 285
SatI GCNGC 3 cut(s) 108, 399, 504
Sau96I GGNCC 4 cut(s) 16, 281, 400, 505
ScrFI CCNGG 4 cut(s) 20, 363, 374, 431
SduI GDGCHC 3 cut(s) 35, 45, 447
SfaNI GCATC 2 cut(s) 82, 501
SfcI CTRYAG 2 cut(s) 393, 459
SfiI GGCCNNNNNGGCC 2 cut(s) 407, 503
SmiMI CAYNNNNRTG 2 cut(s) 38, 344
Sse9I AATT 1 cut(s) 90
SsiI CCGC 7 cut(s) 107, 124, 265, 302, 398, 434, 503
StyD4I CCNGG 4 cut(s) 18, 361, 372, 429
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 2 cut(s) 37, 202
TasI AATT 1 cut(s) 90
TauI GCSGC 3 cut(s) 110, 401, 506
TscAI CASTG 2 cut(s) 40, 150
TspRI CASTG 2 cut(s) 40, 150
XapI RAATTY 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.