FvH4_5g32991

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000109
Physical Location & Seq
Reverse (-)
23819028 .. 23822604
3577 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g32991.t1

Sequence Viewer

Length: 744 bp
ATGGCAGAAAAGAGCGTTTACCAGTCAATACTTTTCCAATCAAGAGAGTTTAATGCCGACAGAAACATTCTCTCTTTGGTGGTCAGAGATCCACCGGTTTCTTCTCGGCCAAACCAAGAGATGCAACAAGCTTGTTGCTTTCAAAATGGGGGCGGGATAGCTAAGCCTACTGATGGTCACCATCGTAGCGCCGCCATCGTCCAACACCATGAGGCCACATTTGAAGTCAGCGTCCTTAGATGCAAGGTTGTTGCCATAACCATTGGCAACCCAACCAAAGACGCCGTCAGCAGTCACCGTCCCACCGTGTTAACTAAAAAGACACCCTCAAATCTTTCCTATAAAAAGGGAGGGGGATTTGACGACGGGAAGGGGAGCTCCTCGGTTCAAGCAGATCATGATTTCTTCATGAAACTACTTGGGTTTATGTCTTTTGGGGTGTTACAGCTAAACACAATAGTGGACCTACCTGTCCGCATCGGCAAAAAATGCGATGCATCAATATATGTGGGTGCCGCCGATCTTGGTAAACAACTTAAGGGTCAAGTGACATTGCTAGAAGCTGAATCTGCTACATTGGGTCTTGTTCTGGAGCTCCCTTTTCCTAACTTTGTAGGTTCTCTAATCATATCTCCTCTAAAGAAACACAAGGTTGGGAGGCTAGTGGATTTGAGGAATCAACCGAAGGAAGAGGACATTCACCCATGGAAGATGCAGATCAATACCAATGTTAAAGTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

27.06

Weight (kDa)

9.25

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 470
AccB1I GGYRCC 1 cut(s) 512
AciI CCGC 4 cut(s) 153, 192, 475, 516
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 107
AcyI GRCGYC 1 cut(s) 282
AfiI CCNNNNNNNGG 1 cut(s) 173
AflII CTTAAG 1 cut(s) 536
AgeI ACCGGT 1 cut(s) 94
AgsI TTSAA 3 cut(s) 143, 224, 389
AleI CACNNNNGTG 1 cut(s) 458
AluBI AGCT 6 cut(s) 131, 161, 378, 448, 563, 595
AluI AGCT 6 cut(s) 131, 161, 378, 448, 563, 595
Alw21I GWGCWC 2 cut(s) 380, 597
AlwI GGATC 1 cut(s) 83
AoxI GGCC 2 cut(s) 107, 213
ArsI GACNNNNNNTTYG 2 cut(s) 270, 302
AsiGI ACCGGT 1 cut(s) 94
AspLEI GCGC 1 cut(s) 191
AspS9I GGNCC 1 cut(s) 463
AsuHPI GGTGA 3 cut(s) 170, 287, 692
AvaII GGWCC 1 cut(s) 463
BanI GGYRCC 1 cut(s) 512
BanII GRGCYC 2 cut(s) 380, 597
Bbv12I GWGCWC 2 cut(s) 380, 597
BccI CCATC 3 cut(s) 167, 189, 203
BceAI ACGGC 1 cut(s) 269
BfaI CTAG 2 cut(s) 557, 662
BfoI RGCGCY 1 cut(s) 192
BfrI CTTAAG 1 cut(s) 536
BisI GCNGC 2 cut(s) 192, 516
BlpI GCTNAGC 1 cut(s) 162
BlsI GCNGC 2 cut(s) 193, 517
Bme18I GGWCC 1 cut(s) 463
BmgT120I GGNCC 1 cut(s) 463
BmiI GGNNCC 1 cut(s) 514
BmsI GCATC 6 cut(s) 111, 230, 484, 486, 506, 702
BpmI CTGGAG 1 cut(s) 611
Bpu1102I GCTNAGC 1 cut(s) 162
BsaBI GATNNNNATC 1 cut(s) 716
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 381, 704
BsaWI WCCGGW 1 cut(s) 94
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 22
Bse3DI GCAATG 1 cut(s) 551
Bse8I GATNNNNATC 1 cut(s) 716
BseDI CCNNGG 2 cut(s) 381, 704
BseJI GATNNNNATC 1 cut(s) 716
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMI GCAATG 1 cut(s) 551
BseNI ACTGG 1 cut(s) 22
BseRI GAGGAG 2 cut(s) 370, 624
BshFI GGCC 2 cut(s) 109, 215
BshNI GGYRCC 1 cut(s) 512
BshTI ACCGGT 1 cut(s) 94
BsiHKAI GWGCWC 2 cut(s) 380, 597
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 1 cut(s) 285
BslI CCNNNNNNNGG 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 285
BsnI GGCC 2 cut(s) 109, 215
Bsp1286I GDGCHC 2 cut(s) 380, 597
Bsp143I GATC 4 cut(s) 88, 394, 520, 717
Bsp1720I GCTNAGC 1 cut(s) 162
Bsp19I CCATGG 1 cut(s) 704
BspACI CCGC 4 cut(s) 153, 192, 475, 516
BspANI GGCC 2 cut(s) 109, 215
BspHI TCATGA 2 cut(s) 397, 408
BspLI GGNNCC 1 cut(s) 514
BspPI GGATC 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 512
BspTI CTTAAG 1 cut(s) 536
BsrDI GCAATG 1 cut(s) 551
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 1 cut(s) 22
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 2 cut(s) 381, 704
BssMI GATC 4 cut(s) 88, 394, 520, 717
BssNI GRCGYC 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 704
Bst4CI ACNGT 2 cut(s) 299, 307
Bst6I CTCTTC 1 cut(s) 684
BstACI GRCGYC 1 cut(s) 282
BstAFI CTTAAG 1 cut(s) 536
BstAPI GCANNNNNTGC 1 cut(s) 489
BstDEI CTNAG 2 cut(s) 162, 236
BstDSI CCRYGG 1 cut(s) 704
BstEII GGTNACC 1 cut(s) 176
BstH2I RGCGCY 1 cut(s) 192
BstHHI GCGC 1 cut(s) 191
BstKTI GATC 4 cut(s) 91, 397, 523, 720
BstMBI GATC 4 cut(s) 88, 394, 520, 717
BstMWI GCNNNNNNNGC 2 cut(s) 489, 569
BstPI GGTNACC 1 cut(s) 176
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BsuRI GGCC 2 cut(s) 109, 215
BtgI CCRYGG 1 cut(s) 704
BtgZI GCGATG 1 cut(s) 507
CciI TCATGA 2 cut(s) 397, 408
CfoI GCGC 1 cut(s) 191
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 463
CseI GACGC 2 cut(s) 220, 290
CspAI ACCGGT 1 cut(s) 94
CspCI CAANNNNNGTGG 2 cut(s) 489, 524
CviAII CATG 4 cut(s) 209, 398, 409, 705
DdeI CTNAG 2 cut(s) 162, 236
DpnI GATC 4 cut(s) 90, 396, 522, 719
DpnII GATC 4 cut(s) 88, 394, 520, 717
DrdI GACNNNNNNGTC 1 cut(s) 470
DseDI GACNNNNNNGTC 1 cut(s) 470
EaeI YGGCCR 1 cut(s) 107
Eam1104I CTCTTC 1 cut(s) 684
EarI CTCTTC 1 cut(s) 684
Ecl136II GAGCTC 2 cut(s) 378, 595
Eco130I CCWWGG 1 cut(s) 704
Eco24I GRGCYC 2 cut(s) 380, 597
Eco47I GGWCC 1 cut(s) 463
Eco53kI GAGCTC 2 cut(s) 378, 595
Eco91I GGTNACC 1 cut(s) 176
EcoICRI GAGCTC 2 cut(s) 378, 595
EcoO65I GGTNACC 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 704
EcoT22I ATGCAT 1 cut(s) 499
EcoT38I GRGCYC 2 cut(s) 380, 597
ErhI CCWWGG 1 cut(s) 704
FaeI CATG 4 cut(s) 212, 401, 412, 708
FaqI GGGAC 1 cut(s) 285
FatI CATG 4 cut(s) 208, 397, 408, 704
FauI CCCGC 1 cut(s) 146
Fnu4HI GCNGC 2 cut(s) 192, 516
FriOI GRGCYC 2 cut(s) 380, 597
Fsp4HI GCNGC 2 cut(s) 192, 516
FspBI CTAG 2 cut(s) 557, 662
GlaI GCGC 1 cut(s) 190
GluI GCNGC 2 cut(s) 192, 516
GsuI CTGGAG 1 cut(s) 611
HaeII RGCGCY 1 cut(s) 192
HaeIII GGCC 2 cut(s) 109, 215
HapII CCGG 1 cut(s) 95
HgaI GACGC 2 cut(s) 220, 290
HhaI GCGC 1 cut(s) 191
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 4 cut(s) 212, 401, 412, 708
Hin6I GCGC 1 cut(s) 189
HinP1I GCGC 1 cut(s) 189
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HindIII AAGCTT 1 cut(s) 129
HinfI GANTC 2 cut(s) 566, 676
HpaI GTTAAC 1 cut(s) 312
HpaII CCGG 1 cut(s) 95
HphI GGTGA 3 cut(s) 170, 287, 692
Hpy166II GTNNAC 4 cut(s) 19, 312, 463, 530
Hpy188I TCNGA 1 cut(s) 86
Hpy188III TCNNGA 4 cut(s) 42, 398, 409, 590
Hpy8I GTNNAC 4 cut(s) 19, 312, 463, 530
Hpy99I CGWCG 1 cut(s) 368
HpyAV CCTTC 2 cut(s) 364, 679
HpyCH4III ACNGT 2 cut(s) 299, 307
HpyCH4V TGCA 4 cut(s) 124, 243, 497, 715
HpyF10VI GCNNNNNNNGC 2 cut(s) 489, 569
HpyF3I CTNAG 2 cut(s) 162, 236
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 4 cut(s) 212, 401, 412, 708
HspAI GCGC 1 cut(s) 189
KspAI GTTAAC 1 cut(s) 312
Kzo9I GATC 4 cut(s) 88, 394, 520, 717
LmnI GCTCC 4 cut(s) 375, 383, 592, 600
LpnPI CCDG 4 cut(s) 35, 108, 483, 575
LweI GCATC 6 cut(s) 111, 230, 484, 486, 506, 702
MaeI CTAG 2 cut(s) 557, 662
MaeIII GTNAC 4 cut(s) 176, 293, 441, 547
MalI GATC 4 cut(s) 90, 396, 522, 719
MboI GATC 4 cut(s) 88, 394, 520, 717
MboII GAAGA 4 cut(s) 93, 397, 701, 721
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 2 cut(s) 380, 597
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 8 cut(s) 205, 337, 344, 391, 645, 651, 666, 685
Mph1103I ATGCAT 1 cut(s) 499
MseI TTAA 4 cut(s) 51, 311, 537, 732
MslI CAYNNNNRTG 1 cut(s) 458
MspCI CTTAAG 1 cut(s) 536
MspI CCGG 1 cut(s) 95
MwoI GCNNNNNNNGC 2 cut(s) 489, 569
NcoI CCATGG 1 cut(s) 704
NdeII GATC 4 cut(s) 88, 394, 520, 717
NlaIII CATG 4 cut(s) 212, 401, 412, 708
NlaIV GGNNCC 1 cut(s) 514
NmeAIII GCCGAG 1 cut(s) 85
NmuCI GTSAC 3 cut(s) 176, 293, 547
NsiI ATGCAT 1 cut(s) 499
OliI CACNNNNGTG 1 cut(s) 458
PagI TCATGA 2 cut(s) 397, 408
PfeI GAWTC 2 cut(s) 566, 676
PflFI GACNNNGTC 1 cut(s) 284
PinAI ACCGGT 1 cut(s) 94
PkrI GCNGC 2 cut(s) 193, 517
Psp124BI GAGCTC 2 cut(s) 380, 597
PspEI GGTNACC 1 cut(s) 176
PspN4I GGNNCC 1 cut(s) 514
PspPI GGNCC 1 cut(s) 463
PsuI RGATCY 1 cut(s) 88
PsyI GACNNNGTC 1 cut(s) 284
RseI CAYNNNNRTG 1 cut(s) 458
SacI GAGCTC 2 cut(s) 380, 597
SaqAI TTAA 4 cut(s) 51, 311, 537, 732
SatI GCNGC 2 cut(s) 192, 516
Sau3AI GATC 4 cut(s) 88, 394, 520, 717
Sau96I GGNCC 1 cut(s) 463
SduI GDGCHC 2 cut(s) 380, 597
SfaNI GCATC 6 cut(s) 111, 230, 484, 486, 506, 702
SinI GGWCC 1 cut(s) 463
SmiMI CAYNNNNRTG 1 cut(s) 458
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
SsiI CCGC 4 cut(s) 153, 192, 475, 516
SspMI CTAG 2 cut(s) 557, 662
SstI GAGCTC 2 cut(s) 380, 597
StyI CCWWGG 1 cut(s) 704
TaaI ACNGT 2 cut(s) 299, 307
TauI GCSGC 2 cut(s) 194, 518
TfiI GAWTC 2 cut(s) 566, 676
Tru1I TTAA 4 cut(s) 51, 311, 537, 732
Tru9I TTAA 4 cut(s) 51, 311, 537, 732
TseFI GTSAC 3 cut(s) 176, 293, 547
Tsp45I GTSAC 3 cut(s) 176, 293, 547
TspDTI ATGAA 2 cut(s) 397, 425
Tth111I GACNNNGTC 1 cut(s) 284
Vha464I CTTAAG 1 cut(s) 536
VpaK11BI GGWCC 1 cut(s) 463
XspI CTAG 2 cut(s) 557, 662
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.