Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 34 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 651 |
| AccI | GTMKAC | 1 cut(s) | 473 |
| AciI | CCGC | 2 cut(s) | 116, 477 |
| AclWI | GGATC | 3 cut(s) | 166, 179, 191 |
| AcsI | RAATTY | 1 cut(s) | 563 |
| AcuI | CTGAAG | 2 cut(s) | 214, 474 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 651 |
| AflIII | ACRYGT | 1 cut(s) | 36 |
| AgsI | TTSAA | 5 cut(s) | 65, 205, 523, 568, 674 |
| AjiI | CACGTC | 1 cut(s) | 37 |
| AluBI | AGCT | 5 cut(s) | 98, 122, 134, 338, 403 |
| AluI | AGCT | 5 cut(s) | 98, 122, 134, 338, 403 |
| Alw26I | GTCTC | 1 cut(s) | 451 |
| AlwI | GGATC | 3 cut(s) | 166, 179, 191 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 605 |
| Ama87I | CYCGRG | 1 cut(s) | 317 |
| ApeKI | GCWGC | 3 cut(s) | 91, 144, 612 |
| ApoI | RAATTY | 1 cut(s) | 563 |
| AspA2I | CCTAGG | 1 cut(s) | 167 |
| AspS9I | GGNCC | 1 cut(s) | 412 |
| AsuHPI | GGTGA | 1 cut(s) | 539 |
| AsuNHI | GCTAGC | 1 cut(s) | 94 |
| AvaI | CYCGRG | 1 cut(s) | 317 |
| AvaII | GGWCC | 1 cut(s) | 412 |
| AvrII | CCTAGG | 1 cut(s) | 167 |
| BamHI | GGATCC | 1 cut(s) | 171 |
| BbvI | GCAGC | 3 cut(s) | 78, 156, 624 |
| BccI | CCATC | 3 cut(s) | 17, 269, 497 |
| BcoDI | GTCTC | 1 cut(s) | 451 |
| BfaI | CTAG | 3 cut(s) | 95, 168, 691 |
| BfuAI | ACCTGC | 1 cut(s) | 34 |
| BisI | GCNGC | 3 cut(s) | 92, 145, 613 |
| BlnI | CCTAGG | 1 cut(s) | 167 |
| BlsI | GCNGC | 3 cut(s) | 93, 146, 614 |
| Bme18I | GGWCC | 1 cut(s) | 412 |
| BmeT110I | CYCGRG | 1 cut(s) | 317 |
| BmgBI | CACGTC | 1 cut(s) | 37 |
| BmgT120I | GGNCC | 1 cut(s) | 412 |
| BmiI | GGNNCC | 2 cut(s) | 173, 485 |
| BmtI | GCTAGC | 1 cut(s) | 98 |
| BpmI | CTGGAG | 1 cut(s) | 182 |
| BsaJI | CCNNGG | 2 cut(s) | 138, 167 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 651 |
| Bse1I | ACTGG | 1 cut(s) | 199 |
| BseDI | CCNNGG | 2 cut(s) | 138, 167 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 651 |
| BseMII | CTCAG | 1 cut(s) | 201 |
| BseNI | ACTGG | 1 cut(s) | 199 |
| BseRI | GAGGAG | 2 cut(s) | 125, 439 |
| BseXI | GCAGC | 3 cut(s) | 78, 156, 624 |
| BsiHKCI | CYCGRG | 1 cut(s) | 317 |
| BsiSI | CCGG | 2 cut(s) | 175, 555 |
| BslFI | GGGAC | 1 cut(s) | 446 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 651 |
| BsmAI | GTCTC | 1 cut(s) | 451 |
| BsmFI | GGGAC | 1 cut(s) | 446 |
| BsoBI | CYCGRG | 1 cut(s) | 317 |
| Bsp143I | GATC | 5 cut(s) | 171, 183, 241, 592, 629 |
| BspACI | CCGC | 2 cut(s) | 116, 477 |
| BspCNI | CTCAG | 1 cut(s) | 200 |
| BspLI | GGNNCC | 2 cut(s) | 173, 485 |
| BspMI | ACCTGC | 1 cut(s) | 34 |
| BspOI | GCTAGC | 1 cut(s) | 98 |
| BspPI | GGATC | 3 cut(s) | 166, 179, 191 |
| BsrI | ACTGG | 1 cut(s) | 199 |
| BssECI | CCNNGG | 2 cut(s) | 138, 167 |
| BssMI | GATC | 5 cut(s) | 171, 183, 241, 592, 629 |
| BssNAI | GTATAC | 1 cut(s) | 474 |
| BssT1I | CCWWGG | 2 cut(s) | 138, 167 |
| Bst1107I | GTATAC | 1 cut(s) | 474 |
| Bst6I | CTCTTC | 1 cut(s) | 453 |
| BstC8I | GCNNGC | 1 cut(s) | 96 |
| BstDEI | CTNAG | 1 cut(s) | 187 |
| BstKTI | GATC | 5 cut(s) | 174, 186, 244, 595, 632 |
| BstMAI | GTCTC | 1 cut(s) | 451 |
| BstMBI | GATC | 5 cut(s) | 171, 183, 241, 592, 629 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 100 |
| BstV1I | GCAGC | 3 cut(s) | 78, 156, 624 |
| BstX2I | RGATCY | 2 cut(s) | 171, 183 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 385 |
| BstYI | RGATCY | 2 cut(s) | 171, 183 |
| BstZ17I | GTATAC | 1 cut(s) | 474 |
| BtrI | CACGTC | 1 cut(s) | 37 |
| BveI | ACCTGC | 1 cut(s) | 34 |
| Cac8I | GCNNGC | 1 cut(s) | 96 |
| CaiI | CAGNNNCTG | 1 cut(s) | 605 |
| Cfr13I | GGNCC | 1 cut(s) | 412 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 248, 283, 524, 559 |
| CviAII | CATG | 2 cut(s) | 20, 179 |
| DdeI | CTNAG | 1 cut(s) | 187 |
| DpnI | GATC | 5 cut(s) | 173, 185, 243, 594, 631 |
| DpnII | GATC | 5 cut(s) | 171, 183, 241, 592, 629 |
| DraI | TTTAAA | 1 cut(s) | 334 |
| Eam1104I | CTCTTC | 1 cut(s) | 453 |
| EarI | CTCTTC | 1 cut(s) | 453 |
| Eco130I | CCWWGG | 2 cut(s) | 138, 167 |
| Eco47I | GGWCC | 1 cut(s) | 412 |
| Eco57I | CTGAAG | 2 cut(s) | 214, 474 |
| Eco88I | CYCGRG | 1 cut(s) | 317 |
| EcoT14I | CCWWGG | 2 cut(s) | 138, 167 |
| ErhI | CCWWGG | 2 cut(s) | 138, 167 |
| FaeI | CATG | 2 cut(s) | 23, 182 |
| FaqI | GGGAC | 1 cut(s) | 446 |
| FatI | CATG | 2 cut(s) | 19, 178 |
| FblI | GTMKAC | 1 cut(s) | 473 |
| Fnu4HI | GCNGC | 3 cut(s) | 92, 145, 613 |
| Fsp4HI | GCNGC | 3 cut(s) | 92, 145, 613 |
| FspBI | CTAG | 3 cut(s) | 95, 168, 691 |
| GluI | GCNGC | 3 cut(s) | 92, 145, 613 |
| GsuI | CTGGAG | 1 cut(s) | 182 |
| HapII | CCGG | 2 cut(s) | 175, 555 |
| Hin1II | CATG | 2 cut(s) | 23, 182 |
| HinfI | GANTC | 3 cut(s) | 225, 558, 602 |
| HpaII | CCGG | 2 cut(s) | 175, 555 |
| HphI | GGTGA | 1 cut(s) | 539 |
| Hpy166II | GTNNAC | 1 cut(s) | 474 |
| Hpy188I | TCNGA | 4 cut(s) | 16, 454, 597, 607 |
| Hpy188III | TCNNGA | 3 cut(s) | 392, 652, 682 |
| Hpy8I | GTNNAC | 1 cut(s) | 474 |
| HpyAV | CCTTC | 4 cut(s) | 422, 425, 592, 679 |
| HpyCH4IV | ACGT | 3 cut(s) | 36, 435, 656 |
| HpyCH4V | TGCA | 2 cut(s) | 43, 374 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 100 |
| HpyF3I | CTNAG | 1 cut(s) | 187 |
| HpySE526I | ACGT | 3 cut(s) | 36, 435, 656 |
| Hsp92II | CATG | 2 cut(s) | 23, 182 |
| Kzo9I | GATC | 5 cut(s) | 171, 183, 241, 592, 629 |
| LmnI | GCTCC | 2 cut(s) | 131, 483 |
| LpnPI | CCDG | 9 cut(s) | 29, 188, 212, 217, 291, 526, 568, 618, 637 |
| Lsp1109I | GCAGC | 3 cut(s) | 78, 156, 624 |
| MaeI | CTAG | 3 cut(s) | 95, 168, 691 |
| MaeII | ACGT | 3 cut(s) | 36, 435, 656 |
| MaeIII | GTNAC | 1 cut(s) | 32 |
| MalI | GATC | 5 cut(s) | 173, 185, 243, 594, 631 |
| MboI | GATC | 5 cut(s) | 171, 183, 241, 592, 629 |
| MboII | GAAGA | 4 cut(s) | 220, 467, 470, 686 |
| MflI | RGATCY | 2 cut(s) | 171, 183 |
| MluCI | AATT | 3 cut(s) | 156, 295, 563 |
| MmeI | TCCRAC | 3 cut(s) | 202, 390, 514 |
| MnlI | CCTC | 6 cut(s) | 103, 106, 272, 460, 497, 500 |
| MseI | TTAA | 1 cut(s) | 333 |
| MslI | CAYNNNNRTG | 1 cut(s) | 383 |
| MspI | CCGG | 2 cut(s) | 175, 555 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 100 |
| NdeII | GATC | 5 cut(s) | 171, 183, 241, 592, 629 |
| NheI | GCTAGC | 1 cut(s) | 94 |
| NlaIII | CATG | 2 cut(s) | 23, 182 |
| NlaIV | GGNNCC | 2 cut(s) | 173, 485 |
| NmuCI | GTSAC | 1 cut(s) | 32 |
| PfeI | GAWTC | 3 cut(s) | 225, 558, 602 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 651 |
| PkrI | GCNGC | 3 cut(s) | 93, 146, 614 |
| PspN4I | GGNNCC | 2 cut(s) | 173, 485 |
| PspPI | GGNCC | 1 cut(s) | 412 |
| PstNI | CAGNNNCTG | 1 cut(s) | 605 |
| PsuI | RGATCY | 2 cut(s) | 171, 183 |
| RseI | CAYNNNNRTG | 1 cut(s) | 383 |
| SaqAI | TTAA | 1 cut(s) | 333 |
| SatI | GCNGC | 3 cut(s) | 92, 145, 613 |
| Sau3AI | GATC | 5 cut(s) | 171, 183, 241, 592, 629 |
| Sau96I | GGNCC | 1 cut(s) | 412 |
| SinI | GGWCC | 1 cut(s) | 412 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 383 |
| Sse9I | AATT | 3 cut(s) | 156, 295, 563 |
| SsiI | CCGC | 2 cut(s) | 116, 477 |
| SspI | AATATT | 1 cut(s) | 81 |
| SspMI | CTAG | 3 cut(s) | 95, 168, 691 |
| StyI | CCWWGG | 2 cut(s) | 138, 167 |
| TaiI | ACGT | 3 cut(s) | 39, 438, 659 |
| TaqI | TCGA | 5 cut(s) | 50, 75, 273, 393, 628 |
| TasI | AATT | 3 cut(s) | 156, 295, 563 |
| TfiI | GAWTC | 3 cut(s) | 225, 558, 602 |
| Tru1I | TTAA | 1 cut(s) | 333 |
| Tru9I | TTAA | 1 cut(s) | 333 |
| TseFI | GTSAC | 1 cut(s) | 32 |
| TseI | GCWGC | 3 cut(s) | 91, 144, 612 |
| Tsp45I | GTSAC | 1 cut(s) | 32 |
| TspDTI | ATGAA | 1 cut(s) | 303 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 651 |
| VpaK11BI | GGWCC | 1 cut(s) | 412 |
| XapI | RAATTY | 1 cut(s) | 563 |
| XmaJI | CCTAGG | 1 cut(s) | 167 |
| XmiI | GTMKAC | 1 cut(s) | 473 |
| XspI | CTAG | 3 cut(s) | 95, 168, 691 |