Rw1G026500

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000109
Physical Location & Seq
Reverse (-)
53641270 .. 53641728
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G026500.1

Sequence Viewer

Length: 459 bp
ATGGCCAATGTGTGGGGGTTGAAACAGAGACTCTCTATCCGGCATCAAGACCATCGTTTCATTTTGCGCTTTAACAAGACGGAGGAACGAGACAAGATCTTGTTAGGAGGGCTGTGGTTCTACGGTCGTTCTATGTTTGCTTTGGCCGTGTATGACGGCTTTTGTGAGGCCAAATGGGTGCCCATCCCAGCAATTTCGGTCTGGGTGGAAGTGCTTGGCCTTCCTCCAATACTGATGACCATTGAAGCTGTCTCCATGATCGGTGCTTCTTTGGGTCAGGTCCTTCAGGTGGACAGAGCGAATATTCGCCGTGGCTTGAAGGCTAGGGTTCGCATCTCCCATCTGATCACAACTCCAGTGAAGCAAGCCTACCCTCCTATGCTCTTCGAGTTTGGGACAGGGAAGGATTTGGTTTCTGCAAGGGTGACCTTCCGGTATGAGAAGATGGTTGGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

152

Amino Acids

17.37

Weight (kDa)

10.13

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 1 - 52 1.3e-07 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 178
AccB7I CCANNNNNTGG 1 cut(s) 12
AcoI YGGCCR 2 cut(s) 3, 144
AcuI CTGAAG 1 cut(s) 269
AfiI CCNNNNNNNGG 2 cut(s) 12, 289
AgsI TTSAA 3 cut(s) 22, 245, 319
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
Alw26I GTCTC 3 cut(s) 22, 84, 256
AoxI GGCC 4 cut(s) 3, 144, 168, 217
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 280
AsuHPI GGTGA 1 cut(s) 436
AvaII GGWCC 1 cut(s) 280
BaeGI GKGCMC 1 cut(s) 183
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 178
BarI GAAGNNNNNNTAC 2 cut(s) 353, 385
BccI CCATC 4 cut(s) 60, 191, 348, 439
BceAI ACGGC 3 cut(s) 131, 172, 294
BclI TGATCA 1 cut(s) 345
BcoDI GTCTC 3 cut(s) 22, 84, 256
BfaI CTAG 1 cut(s) 324
BglII AGATCT 1 cut(s) 96
Bme18I GGWCC 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 280
BmiI GGNNCC 1 cut(s) 180
BmsI GCATC 2 cut(s) 52, 342
BpmI CTGGAG 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 310
BsaWI WCCGGW 1 cut(s) 432
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 289
Bse1I ACTGG 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 1 cut(s) 183
BseLI CCNNNNNNNGG 2 cut(s) 12, 289
BseNI ACTGG 1 cut(s) 356
BseSI GKGCMC 1 cut(s) 183
BseYI CCCAGC 1 cut(s) 187
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 4 cut(s) 5, 146, 170, 219
BshNI GGYRCC 1 cut(s) 178
BsiEI CGRYCG 1 cut(s) 127
BsiSI CCGG 2 cut(s) 40, 433
BslFI GGGAC 1 cut(s) 409
BslI CCNNNNNNNGG 2 cut(s) 12, 289
BsmAI GTCTC 3 cut(s) 22, 84, 256
BsmFI GGGAC 1 cut(s) 409
BsnI GGCC 4 cut(s) 5, 146, 170, 219
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 3 cut(s) 96, 258, 345
BspANI GGCC 4 cut(s) 5, 146, 170, 219
BspLI GGNNCC 1 cut(s) 180
BspQI GCTCTTC 1 cut(s) 389
BspT107I GGYRCC 1 cut(s) 178
BsrI ACTGG 1 cut(s) 356
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 3 cut(s) 96, 258, 345
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 366
BstDSI CCRYGG 1 cut(s) 310
BstEII GGTNACC 1 cut(s) 424
BstF5I GGATG 1 cut(s) 183
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 3 cut(s) 99, 261, 348
BstMAI GTCTC 3 cut(s) 22, 84, 256
BstMBI GATC 3 cut(s) 96, 258, 345
BstMCI CGRYCG 1 cut(s) 127
BstPI GGTNACC 1 cut(s) 424
BstSLI GKGCMC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 96
BstYI RGATCY 1 cut(s) 96
BsuRI GGCC 4 cut(s) 5, 146, 170, 219
BtgI CCRYGG 1 cut(s) 310
BtsCI GGATG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 363
Cac8I GCNNGC 1 cut(s) 366
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 1 cut(s) 280
CviAII CATG 1 cut(s) 256
DpnI GATC 3 cut(s) 98, 260, 347
DpnII GATC 3 cut(s) 96, 258, 345
EaeI YGGCCR 2 cut(s) 3, 144
Eam1104I CTCTTC 1 cut(s) 389
EarI CTCTTC 1 cut(s) 389
Eco47I GGWCC 1 cut(s) 280
Eco57I CTGAAG 1 cut(s) 269
Eco91I GGTNACC 1 cut(s) 424
EcoO109I RGGNCCY 1 cut(s) 280
EcoO65I GGTNACC 1 cut(s) 424
FaeI CATG 1 cut(s) 259
FaiI YATR 5 cut(s) 134, 153, 257, 380, 438
FaqI GGGAC 1 cut(s) 409
FatI CATG 1 cut(s) 255
FbaI TGATCA 1 cut(s) 345
FokI GGATG 1 cut(s) 170
FspBI CTAG 1 cut(s) 324
GlaI GCGC 1 cut(s) 68
GsaI CCCAGC 1 cut(s) 191
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 4 cut(s) 5, 146, 170, 219
HapII CCGG 2 cut(s) 40, 433
HhaI GCGC 1 cut(s) 69
Hin1II CATG 1 cut(s) 259
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HinfI GANTC 1 cut(s) 30
HpaII CCGG 2 cut(s) 40, 433
HphI GGTGA 1 cut(s) 436
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 2 cut(s) 345, 458
Hpy188III TCNNGA 1 cut(s) 47
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 5 cut(s) 230, 293, 313, 397, 439
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 1 cut(s) 419
Hsp92II CATG 1 cut(s) 259
HspAI GCGC 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 345
Kzo9I GATC 3 cut(s) 96, 258, 345
LguI GCTCTTC 1 cut(s) 389
LpnPI CCDG 8 cut(s) 53, 187, 201, 263, 272, 369, 384, 446
LweI GCATC 2 cut(s) 52, 342
MaeI CTAG 1 cut(s) 324
MaeIII GTNAC 1 cut(s) 424
MalI GATC 3 cut(s) 98, 260, 347
MboI GATC 3 cut(s) 96, 258, 345
MboII GAAGA 2 cut(s) 376, 454
MflI RGATCY 1 cut(s) 96
MhlI GDGCHC 1 cut(s) 183
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 192
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 24
MnlI CCTC 5 cut(s) 76, 101, 160, 234, 384
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 72
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 40, 433
NdeII GATC 3 cut(s) 96, 258, 345
NlaIII CATG 1 cut(s) 259
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 424
PciSI GCTCTTC 1 cut(s) 389
PflMI CCANNNNNTGG 1 cut(s) 12
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PpuMI RGGWCCY 1 cut(s) 280
Psp5II RGGWCCY 1 cut(s) 280
PspEI GGTNACC 1 cut(s) 424
PspFI CCCAGC 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 1 cut(s) 280
PspPPI RGGWCCY 1 cut(s) 280
PsuI RGATCY 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 389
SaqAI TTAA 1 cut(s) 72
Sau3AI GATC 3 cut(s) 96, 258, 345
Sau96I GGNCC 1 cut(s) 280
SchI GAGTC 1 cut(s) 24
SduI GDGCHC 1 cut(s) 183
SetI ASST 4 cut(s) 250, 282, 291, 431
SfaNI GCATC 2 cut(s) 52, 342
SinI GGWCC 1 cut(s) 280
Sse9I AATT 1 cut(s) 192
SspI AATATT 1 cut(s) 304
SspMI CTAG 1 cut(s) 324
TaaI ACNGT 1 cut(s) 125
TaqI TCGA 1 cut(s) 387
TaqII GACCGA 1 cut(s) 187
TasI AATT 1 cut(s) 192
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 1 cut(s) 363
TseFI GTSAC 1 cut(s) 424
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 1 cut(s) 49
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 1 cut(s) 363
Van91I CCANNNNNTGG 1 cut(s) 12
VpaK11BI GGWCC 1 cut(s) 280
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.