FvH4_4g13551

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000109
Physical Location & Seq
Forward (+)
17133378 .. 17136628
3251 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13551.t1

Sequence Viewer

Length: 1488 bp
ATGACCGACGAGGTTTCAACCCATTTTGCCACCACTCTCACCATTCGTGAGGACAGTCCGGCCATTTCCGACGTGATTTCACGGACTCCGGCTGCCTTGGCTCCCTCCTTTGCGATTGGCAGGTTGTTGTCTATGAAGAAGCGCCTCACAGATCCGAAGGTGGTGAATGGAACCCTGACATCCGTCTGGGATCTCCATAACCGTCTCCAGGTACGTTCGGTGGGAGATCGATACTTGCTTAAGCTTTCTCGCCCTGAGGATCGTCGTCATCTGATCCAAGGAGGACCATGGTTCTTTGGACGATCCAACTTCATTCTTTCAGAGTATGATGGTCTCTCTGAGGTGACCACTGTTCCGATCTTATCTATGCTGGTGTGGGTTAAGATCTTTGGACTCTCACCACAGTTGTTCACAGAGGGGGTTGCAGGGAAGGTCGAGGACCTCATAGGGCAGGTGCTGTTTCCGAACAAGATCAGTTTGCGGCGTGGAATTCGGACCAAGGTTTGGCTCATCCATGATATATCGGATCCAGTGAGGGAGGCATTCCCTCCAATGCCTTTTGAATTTGTTTTGGGTGATCGGAAGACGATGGTCATGCTCTCCTTCAAGTATGAAAGGGTGGTAGGGTTTTGTCGAGTTTGTGGACTATTGGAGCATCGATCTCCGGGGTGCGGCGGTCCTCCTGATGTGACGAAGGGATTAGGGTTGGATAGGGTTCGCTCGAATCCTCTTCCTGCTGCGGTGAATCTCTTCTCAGGTGGAGTTCTCTCGGCTCAGAATCCAAGTTCATCGTCATCGCAGTCAGGGAGTGTCTTCTCCATCCTTGGTGTTTCGGTCTCAGAGTTGGCAAGGCAACTGGCTTTGTTCAAATCTTCATTTCCGTCTTTGCTGCCGTCCTTAGGAAAGGGTCCAGAGGGTCCACCAATTATTCAAATTCCAGCGGCAGTCTATAATACAGTTATCGGACCAGGGAAGGCGGTAGCTAACTCTGGGGGCCCTAGGAAAGCTAAGAAGCAGAGTTTTGGAGCTCACTGTGTTCTTGAGATGAGAGAGAGTTCTTGTGGCTCTTCAAAGATGGCGAATCAGTCTGTGGTGGTGATAGAAGCGGTAGAGGATGTTGATGTCACTGCCGACTCCAGTGATTCAGTGTCGGAGCCCGAGGAGATCCCCTTTGGCGTGCCTATGCATTTGGATGTCACTCTACTCCTTCTATACACAGAGTTTGGAGATCAGTTAATCACATTATCGTATGAAAGATTGTCGGATTTCTGTCGAGAATGTGGACTAATGGGGCACCCAACTAGGGTATGCTTTGCACGACTAGGTATTAAAGGGATACCTTTCTCGGAGCGCCTATTTTCTCCTACTCTTAGGCCTAGTTTGGTTCAAGGAATGGAAAGGAAAGGAAAGGAGAGGAATTATTTGAATTCTCCTTTGACATGGGAAAAGAAAGTAAATCCTTTTGACTTTCCTTTCTCAATTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

496

Amino Acids

54.18

Weight (kDa)

8.82

Isoelectric Point (pI)

49.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 197 - 224 1.4e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 442
Acc36I ACCTGC 2 cut(s) 111, 442
AccB1I GGYRCC 1 cut(s) 1293
AccB7I CCANNNNNTGG 1 cut(s) 504
AciI CCGC 7 cut(s) 481, 672, 675, 740, 941, 977, 1106
AclWI GGATC 8 cut(s) 146, 198, 267, 268, 297, 521, 534, 1159
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 4 cut(s) 489, 563, 933, 1426
AfaI GTAC 1 cut(s) 213
AfiI CCNNNNNNNGG 5 cut(s) 208, 504, 671, 899, 1303
AflII CTTAAG 1 cut(s) 239
AgsI TTSAA 8 cut(s) 18, 563, 607, 868, 932, 1071, 1388, 1426
AjiI CACGTC 1 cut(s) 73
AjnI CCWGG 2 cut(s) 207, 967
AluBI AGCT 4 cut(s) 244, 983, 1007, 1028
AluI AGCT 4 cut(s) 244, 983, 1007, 1028
Alw21I GWGCWC 1 cut(s) 1030
Alw26I GTCTC 3 cut(s) 209, 338, 841
AlwI GGATC 8 cut(s) 146, 198, 267, 268, 297, 521, 534, 1159
AlwNI CAGNNNCTG 1 cut(s) 457
Ama87I CYCGRG 1 cut(s) 1157
AoxI GGCC 3 cut(s) 60, 994, 1373
ApaI GGGCCC 1 cut(s) 998
ApeKI GCWGC 3 cut(s) 92, 737, 889
ApoI RAATTY 4 cut(s) 489, 563, 933, 1426
Asp700I GAANNNNTTC 1 cut(s) 749
AspA2I CCTAGG 1 cut(s) 998
AspLEI GCGC 2 cut(s) 144, 1353
AspS9I GGNCC 9 cut(s) 284, 439, 495, 677, 908, 917, 965, 994, 995
AsuC2I CCSGG 1 cut(s) 666
AsuHPI GGTGA 7 cut(s) 31, 175, 355, 390, 587, 754, 1108
AvaI CYCGRG 1 cut(s) 1157
AvaII GGWCC 7 cut(s) 284, 439, 495, 677, 908, 917, 965
AvrII CCTAGG 1 cut(s) 998
AxyI CCTNAGG 2 cut(s) 255, 898
BaeGI GKGCMC 2 cut(s) 998, 1296
BamHI GGATCC 1 cut(s) 526
BanI GGYRCC 1 cut(s) 1293
BanII GRGCYC 3 cut(s) 998, 1030, 1158
BbsI GAAGAC 2 cut(s) 590, 805
Bbv12I GWGCWC 1 cut(s) 1030
BbvI GCAGC 3 cut(s) 79, 724, 876
BccI CCATC 4 cut(s) 323, 583, 827, 1069
BceAI ACGGC 1 cut(s) 877
BcgI CGANNNNNNTGC 2 cut(s) 577, 611
BciT130I CCWGG 2 cut(s) 209, 969
BciVI GTATCC 1 cut(s) 1329
BcnI CCSGG 1 cut(s) 666
BcoDI GTCTC 3 cut(s) 209, 338, 841
BfaI CTAG 4 cut(s) 999, 1302, 1322, 1377
BfoI RGCGCY 2 cut(s) 145, 1354
BfrI CTTAAG 1 cut(s) 239
BfuAI ACCTGC 2 cut(s) 111, 442
BfuI GTATCC 1 cut(s) 1329
BglII AGATCT 1 cut(s) 384
BisI GCNGC 6 cut(s) 93, 482, 673, 738, 890, 942
BlnI CCTAGG 1 cut(s) 998
BlsI GCNGC 6 cut(s) 94, 483, 674, 739, 891, 943
Bme1390I CCNGG 3 cut(s) 209, 666, 969
Bme18I GGWCC 7 cut(s) 284, 439, 495, 677, 908, 917, 965
BmeT110I CYCGRG 1 cut(s) 1157
BmgBI CACGTC 1 cut(s) 73
BmgT120I GGNCC 9 cut(s) 284, 439, 495, 677, 908, 917, 965, 994, 995
BmiI GGNNCC 9 cut(s) 102, 172, 528, 909, 918, 995, 996, 1155, 1295
BmrFI CCNGG 3 cut(s) 209, 666, 969
BmsI GCATC 1 cut(s) 664
BoxI GACNNNNGTC 2 cut(s) 182, 590
BpiI GAAGAC 2 cut(s) 590, 805
BpmI CTGGAG 2 cut(s) 191, 1120
BpuEI CTTGAG 1 cut(s) 1061
BpuMI CCSGG 1 cut(s) 666
Bsa29I ATCGAT 2 cut(s) 229, 658
BsaI GGTCTC 2 cut(s) 338, 841
BsaJI CCNNGG 9 cut(s) 96, 277, 287, 498, 665, 823, 968, 998, 1158
Bsc4I CCNNNNNNNGG 5 cut(s) 208, 504, 671, 899, 1303
Bse1I ACTGG 3 cut(s) 530, 861, 1137
Bse21I CCTNAGG 2 cut(s) 255, 898
BseBI CCWGG 2 cut(s) 209, 969
BseCI ATCGAT 2 cut(s) 229, 658
BseDI CCNNGG 9 cut(s) 96, 277, 287, 498, 665, 823, 968, 998, 1158
BseGI GGATG 5 cut(s) 179, 510, 819, 1120, 1198
BseLI CCNNNNNNNGG 5 cut(s) 208, 504, 671, 899, 1303
BseMII CTCAG 5 cut(s) 246, 330, 768, 788, 852
BseNI ACTGG 3 cut(s) 530, 861, 1137
BseRI GAGGAG 1 cut(s) 1175
BseSI GKGCMC 2 cut(s) 998, 1296
BseXI GCAGC 3 cut(s) 79, 724, 876
BshFI GGCC 3 cut(s) 62, 996, 1375
BshNI GGYRCC 1 cut(s) 1293
BshVI ATCGAT 2 cut(s) 229, 658
BsiHKAI GWGCWC 1 cut(s) 1030
BsiHKCI CYCGRG 1 cut(s) 1157
BsiSI CCGG 3 cut(s) 59, 89, 665
BslI CCNNNNNNNGG 5 cut(s) 208, 504, 671, 899, 1303
BsmAI GTCTC 3 cut(s) 209, 338, 841
BsmBI CGTCTC 1 cut(s) 209
BsmI GAATGC 1 cut(s) 542
BsnI GGCC 3 cut(s) 62, 996, 1375
Bso31I GGTCTC 2 cut(s) 338, 841
BsoBI CYCGRG 1 cut(s) 1157
Bsp120I GGGCCC 1 cut(s) 994
Bsp1286I GDGCHC 4 cut(s) 998, 1030, 1158, 1296
Bsp19I CCATGG 1 cut(s) 287
BspACI CCGC 7 cut(s) 481, 672, 675, 740, 941, 977, 1106
BspANI GGCC 3 cut(s) 62, 996, 1375
BspCNI CTCAG 5 cut(s) 247, 331, 767, 787, 851
BspDI ATCGAT 2 cut(s) 229, 658
BspLI GGNNCC 9 cut(s) 102, 172, 528, 909, 918, 995, 996, 1155, 1295
BspMI ACCTGC 2 cut(s) 111, 442
BspPI GGATC 8 cut(s) 146, 198, 267, 268, 297, 521, 534, 1159
BspQI GCTCTTC 1 cut(s) 1072
BspT107I GGYRCC 1 cut(s) 1293
BspTI CTTAAG 1 cut(s) 239
BspTNI GGTCTC 2 cut(s) 338, 841
BsrI ACTGG 3 cut(s) 530, 861, 1137
BssECI CCNNGG 9 cut(s) 96, 277, 287, 498, 665, 823, 968, 998, 1158
BssT1I CCWWGG 6 cut(s) 96, 277, 287, 498, 823, 998
Bst2UI CCWGG 2 cut(s) 209, 969
Bst4CI ACNGT 6 cut(s) 56, 203, 352, 405, 958, 1034
Bst6I CTCTTC 3 cut(s) 735, 755, 1072
BstAFI CTTAAG 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 1178
BstDEI CTNAG 8 cut(s) 255, 339, 754, 774, 838, 898, 1008, 1370
BstDSI CCRYGG 1 cut(s) 287
BstEII GGTNACC 1 cut(s) 343
BstF5I GGATG 5 cut(s) 179, 510, 819, 1120, 1198
BstH2I RGCGCY 2 cut(s) 145, 1354
BstHHI GCGC 2 cut(s) 144, 1353
BstMAI GTCTC 3 cut(s) 209, 338, 841
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNI CCWGG 2 cut(s) 209, 969
BstPAI GACNNNNGTC 2 cut(s) 182, 590
BstPI GGTNACC 1 cut(s) 343
BstSCI CCNGG 3 cut(s) 207, 664, 967
BstSLI GKGCMC 2 cut(s) 998, 1296
BstV1I GCAGC 3 cut(s) 79, 724, 876
BstV2I GAAGAC 2 cut(s) 590, 805
BstX2I RGATCY 5 cut(s) 151, 190, 384, 526, 1164
BstYI RGATCY 5 cut(s) 151, 190, 384, 526, 1164
Bsu15I ATCGAT 2 cut(s) 229, 658
Bsu36I CCTNAGG 2 cut(s) 255, 898
BsuI GTATCC 1 cut(s) 1329
BsuRI GGCC 3 cut(s) 62, 996, 1375
BsuTUI ATCGAT 2 cut(s) 229, 658
BtgI CCRYGG 1 cut(s) 287
BtgZI GCGATG 1 cut(s) 780
BtrI CACGTC 1 cut(s) 73
BtsCI GGATG 5 cut(s) 179, 510, 819, 1120, 1198
BtsI GCAGTG 1 cut(s) 1125
BtsIMutI CAGTG 6 cut(s) 348, 537, 1030, 1125, 1144, 1152
BveI ACCTGC 2 cut(s) 111, 442
Cac8I GCNNGC 1 cut(s) 1178
CaiI CAGNNNCTG 1 cut(s) 457
CfoI GCGC 2 cut(s) 144, 1353
Cfr13I GGNCC 9 cut(s) 284, 439, 495, 677, 908, 917, 965, 994, 995
ClaI ATCGAT 2 cut(s) 229, 658
Csp6I GTAC 1 cut(s) 212
CviAII CATG 4 cut(s) 288, 515, 595, 1440
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 8 cut(s) 255, 339, 754, 774, 838, 898, 1008, 1370
EaeI YGGCCR 1 cut(s) 60
Eam1104I CTCTTC 3 cut(s) 735, 755, 1072
EarI CTCTTC 3 cut(s) 735, 755, 1072
Ecl136II GAGCTC 1 cut(s) 1028
Eco130I CCWWGG 6 cut(s) 96, 277, 287, 498, 823, 998
Eco147I AGGCCT 1 cut(s) 1375
Eco24I GRGCYC 3 cut(s) 998, 1030, 1158
Eco31I GGTCTC 2 cut(s) 338, 841
Eco47I GGWCC 7 cut(s) 284, 439, 495, 677, 908, 917, 965
Eco53kI GAGCTC 1 cut(s) 1028
Eco81I CCTNAGG 2 cut(s) 255, 898
Eco88I CYCGRG 1 cut(s) 1157
Eco91I GGTNACC 1 cut(s) 343
EcoICRI GAGCTC 1 cut(s) 1028
EcoO109I RGGNCCY 3 cut(s) 439, 994, 995
EcoO65I GGTNACC 1 cut(s) 343
EcoRI GAATTC 2 cut(s) 489, 1426
EcoRII CCWGG 2 cut(s) 207, 967
EcoT14I CCWWGG 6 cut(s) 96, 277, 287, 498, 823, 998
EcoT22I ATGCAT 1 cut(s) 1188
EcoT38I GRGCYC 3 cut(s) 998, 1030, 1158
ErhI CCWWGG 6 cut(s) 96, 277, 287, 498, 823, 998
Esp3I CGTCTC 1 cut(s) 209
FaeI CATG 4 cut(s) 291, 518, 598, 1443
FatI CATG 4 cut(s) 287, 514, 594, 1439
Fnu4HI GCNGC 6 cut(s) 93, 482, 673, 738, 890, 942
FokI GGATG 5 cut(s) 166, 497, 806, 1127, 1205
FriOI GRGCYC 3 cut(s) 998, 1030, 1158
Fsp4HI GCNGC 6 cut(s) 93, 482, 673, 738, 890, 942
FspBI CTAG 4 cut(s) 999, 1302, 1322, 1377
GlaI GCGC 2 cut(s) 143, 1352
GluI GCNGC 6 cut(s) 93, 482, 673, 738, 890, 942
GsuI CTGGAG 2 cut(s) 191, 1120
HaeII RGCGCY 2 cut(s) 145, 1354
HaeIII GGCC 3 cut(s) 62, 996, 1375
HapII CCGG 3 cut(s) 59, 89, 665
HhaI GCGC 2 cut(s) 144, 1353
Hin1II CATG 4 cut(s) 291, 518, 598, 1443
Hin6I GCGC 2 cut(s) 142, 1351
HinP1I GCGC 2 cut(s) 142, 1351
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 8 cut(s) 85, 393, 724, 745, 778, 1081, 1133, 1142
HpaII CCGG 3 cut(s) 59, 89, 665
HphI GGTGA 7 cut(s) 31, 175, 355, 390, 587, 754, 1108
Hpy166II GTNNAC 4 cut(s) 411, 644, 920, 1283
Hpy188III TCNNGA 5 cut(s) 47, 683, 911, 1040, 1274
Hpy8I GTNNAC 4 cut(s) 411, 644, 920, 1283
Hpy99I CGWCG 3 cut(s) 11, 74, 267
HpyAV CCTTC 6 cut(s) 151, 424, 613, 688, 967, 1217
HpyCH4III ACNGT 6 cut(s) 56, 203, 352, 405, 958, 1034
HpyCH4IV ACGT 2 cut(s) 72, 214
HpyCH4V TGCA 3 cut(s) 425, 1186, 1316
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 8 cut(s) 255, 339, 754, 774, 838, 898, 1008, 1370
HpySE526I ACGT 2 cut(s) 72, 214
Hsp92II CATG 4 cut(s) 291, 518, 598, 1443
HspAI GCGC 2 cut(s) 142, 1351
LguI GCTCTTC 1 cut(s) 1072
LmnI GCTCC 5 cut(s) 106, 652, 1025, 1153, 1348
Lsp1109I GCAGC 3 cut(s) 79, 724, 876
LweI GCATC 1 cut(s) 664
MaeI CTAG 4 cut(s) 999, 1302, 1322, 1377
MaeII ACGT 2 cut(s) 72, 214
MaeIII GTNAC 4 cut(s) 343, 688, 1123, 1195
MboII GAAGA 7 cut(s) 148, 595, 722, 742, 805, 864, 1059
MfeI CAATTG 1 cut(s) 1479
MflI RGATCY 5 cut(s) 151, 190, 384, 526, 1164
MhlI GDGCHC 4 cut(s) 998, 1030, 1158, 1296
MluCI AATT 7 cut(s) 489, 563, 924, 933, 1417, 1426, 1479
MlyI GAGTC 3 cut(s) 79, 387, 1127
MmeI TCCRAC 5 cut(s) 93, 330, 687, 1131, 1242
Mph1103I ATGCAT 1 cut(s) 1188
MroXI GAANNNNTTC 1 cut(s) 749
MseI TTAA 4 cut(s) 240, 381, 1235, 1329
MslI CAYNNNNRTG 1 cut(s) 1191
MspA1I CMGCKG 1 cut(s) 941
MspCI CTTAAG 1 cut(s) 239
MspI CCGG 3 cut(s) 59, 89, 665
MspR9I CCNGG 3 cut(s) 209, 666, 969
MunI CAATTG 1 cut(s) 1479
Mva1269I GAATGC 1 cut(s) 542
MvaI CCWGG 2 cut(s) 209, 969
MwoI GCNNNNNNNGC 1 cut(s) 98
NciI CCSGG 1 cut(s) 666
NcoI CCATGG 1 cut(s) 287
NlaIII CATG 4 cut(s) 291, 518, 598, 1443
NlaIV GGNNCC 9 cut(s) 102, 172, 528, 909, 918, 995, 996, 1155, 1295
NmeAIII GCCGAG 1 cut(s) 749
NmuCI GTSAC 4 cut(s) 343, 688, 1123, 1195
NsiI ATGCAT 1 cut(s) 1188
PaqCI CACCTGC 1 cut(s) 442
PceI AGGCCT 1 cut(s) 1375
PciSI GCTCTTC 1 cut(s) 1072
PctI GAATGC 1 cut(s) 542
PdmI GAANNNNTTC 1 cut(s) 749
PfeI GAWTC 5 cut(s) 724, 745, 778, 1081, 1142
PflMI CCANNNNNTGG 1 cut(s) 504
PkrI GCNGC 6 cut(s) 94, 483, 674, 739, 891, 943
PleI GAGTC 3 cut(s) 79, 387, 1127
PpsI GAGTC 3 cut(s) 79, 387, 1127
PpuMI RGGWCCY 1 cut(s) 439
PshAI GACNNNNGTC 2 cut(s) 182, 590
Psp124BI GAGCTC 1 cut(s) 1030
Psp5II RGGWCCY 1 cut(s) 439
Psp6I CCWGG 2 cut(s) 207, 967
PspEI GGTNACC 1 cut(s) 343
PspGI CCWGG 2 cut(s) 207, 967
PspN4I GGNNCC 9 cut(s) 102, 172, 528, 909, 918, 995, 996, 1155, 1295
PspOMI GGGCCC 1 cut(s) 994
PspPI GGNCC 9 cut(s) 284, 439, 495, 677, 908, 917, 965, 994, 995
PspPPI RGGWCCY 1 cut(s) 439
PstNI CAGNNNCTG 1 cut(s) 457
PsuI RGATCY 5 cut(s) 151, 190, 384, 526, 1164
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
RseI CAYNNNNRTG 1 cut(s) 1191
SacI GAGCTC 1 cut(s) 1030
SapI GCTCTTC 1 cut(s) 1072
SaqAI TTAA 4 cut(s) 240, 381, 1235, 1329
SatI GCNGC 6 cut(s) 93, 482, 673, 738, 890, 942
Sau96I GGNCC 9 cut(s) 284, 439, 495, 677, 908, 917, 965, 994, 995
SchI GAGTC 3 cut(s) 79, 387, 1127
ScrFI CCNGG 3 cut(s) 209, 666, 969
SduI GDGCHC 4 cut(s) 998, 1030, 1158, 1296
SfaNI GCATC 1 cut(s) 664
SinI GGWCC 7 cut(s) 284, 439, 495, 677, 908, 917, 965
SmiMI CAYNNNNRTG 1 cut(s) 1191
SmlI CTYRAG 2 cut(s) 239, 1040
SmoI CTYRAG 2 cut(s) 239, 1040
Sse9I AATT 7 cut(s) 489, 563, 924, 933, 1417, 1426, 1479
SseBI AGGCCT 1 cut(s) 1375
SsiI CCGC 7 cut(s) 481, 672, 675, 740, 941, 977, 1106
SspMI CTAG 4 cut(s) 999, 1302, 1322, 1377
SstI GAGCTC 1 cut(s) 1030
StuI AGGCCT 1 cut(s) 1375
StyD4I CCNGG 3 cut(s) 207, 664, 967
StyI CCWWGG 6 cut(s) 96, 277, 287, 498, 823, 998
TaaI ACNGT 6 cut(s) 56, 203, 352, 405, 958, 1034
TaiI ACGT 2 cut(s) 75, 217
TaqI TCGA 6 cut(s) 229, 435, 634, 658, 722, 1273
TaqII GACCGA 2 cut(s) 20, 823
TasI AATT 7 cut(s) 489, 563, 924, 933, 1417, 1426, 1479
TauI GCSGC 3 cut(s) 484, 675, 944
TfiI GAWTC 5 cut(s) 724, 745, 778, 1081, 1142
Tru1I TTAA 4 cut(s) 240, 381, 1235, 1329
Tru9I TTAA 4 cut(s) 240, 381, 1235, 1329
TscAI CASTG 6 cut(s) 355, 537, 1037, 1132, 1144, 1152
TseFI GTSAC 4 cut(s) 343, 688, 1123, 1195
TseI GCWGC 3 cut(s) 92, 737, 889
Tsp45I GTSAC 4 cut(s) 343, 688, 1123, 1195
TspDTI ATGAA 6 cut(s) 149, 301, 627, 777, 864, 1266
TspGWI ACGGA 3 cut(s) 97, 172, 870
TspRI CASTG 6 cut(s) 355, 537, 1037, 1132, 1144, 1152
Van91I CCANNNNNTGG 1 cut(s) 504
Vha464I CTTAAG 1 cut(s) 239
VpaK11BI GGWCC 7 cut(s) 284, 439, 495, 677, 908, 917, 965
XapI RAATTY 4 cut(s) 489, 563, 933, 1426
XmaJI CCTAGG 1 cut(s) 998
XmnI GAANNNNTTC 1 cut(s) 749
XspI CTAG 4 cut(s) 999, 1302, 1322, 1377
Zsp2I ATGCAT 1 cut(s) 1188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.