Rh4CG236200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000109
Physical Location & Seq
Reverse (-)
48054310 .. 48058912
4603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG236200.1

Sequence Viewer

Length: 582 bp
ATGACAGCTCTTCCACCTGGAAGCACCATAGTGGAGGCACCGGCTATTCCTGGTGTAAAGCGAATTGCCTCCATGGCGCTGGTAACTTACAACAAGAGTTTTAAATCGGTAGTGGAACACTCATCAGCTGTGACAGTGCCGGTGTCTTTGGACTTTGAACCCGCATTGGTATTGCCACAAAAGGCAAACTCTTTGATAATGTATCATTTAAAGAAGTGTAAGGATAATCGTTCGGTTGAAGCTTGTAACAAACCCAAGCTGGAAGATGTTAAACCGTGGAAGCTAACTGTTAGAGCAAGTTCACCCGTTGGGTCACCAGAGTTTAAGAAAACCAGGAAGAAGAGTCTTGTGAAGTCCACTAGTGGTGGGGCCCAATGTGAGTTGCAGCTCATTGGTGATGAGGCTATTGTGGTGCTCGATGATAACTCTGAAGAGGCCCCCTCTGCATTCGATGGTCCTAGGATTCATGAACAAGTTGGGGTTGGTACTATGGTGCTTGAGGAATGGAACAATCGTCCAACGAATCGGAGAACATTGTTCTCAATAATGTCAAGTAGAGTCAAGTACACTCAAACAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

21.12

Weight (kDa)

9.26

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 37
AciI CCGC 1 cut(s) 162
AcuI CTGAAG 1 cut(s) 450
AfaI GTAC 2 cut(s) 487, 566
AgsI TTSAA 2 cut(s) 158, 239
AhlI ACTAGT 1 cut(s) 359
AjnI CCWGG 3 cut(s) 16, 49, 332
AleI CACNNNNGTG 1 cut(s) 29
AluBI AGCT 6 cut(s) 8, 128, 242, 259, 283, 388
AluI AGCT 6 cut(s) 8, 128, 242, 259, 283, 388
Alw21I GWGCWC 1 cut(s) 417
AoxI GGCC 2 cut(s) 369, 435
ApaI GGGCCC 1 cut(s) 373
ApeKI GCWGC 1 cut(s) 385
AspA2I CCTAGG 1 cut(s) 458
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 4 cut(s) 369, 370, 436, 455
AsuHPI GGTGA 3 cut(s) 294, 306, 407
AvaII GGWCC 1 cut(s) 455
AvrII CCTAGG 1 cut(s) 458
BaeGI GKGCMC 1 cut(s) 373
BaeI ACNNNNGTAYC 2 cut(s) 477, 510
BanI GGYRCC 1 cut(s) 37
BanII GRGCYC 1 cut(s) 373
Bbv12I GWGCWC 1 cut(s) 417
BbvI GCAGC 1 cut(s) 397
BccI CCATC 1 cut(s) 446
BciT130I CCWGG 3 cut(s) 18, 51, 334
BcuI ACTAGT 1 cut(s) 359
BfaI CTAG 2 cut(s) 360, 459
BfoI RGCGCY 1 cut(s) 80
BglI GCCNNNNNGGC 1 cut(s) 74
BisI GCNGC 1 cut(s) 386
BlnI CCTAGG 1 cut(s) 458
BlsI GCNGC 1 cut(s) 387
Bme1390I CCNGG 3 cut(s) 18, 51, 334
Bme18I GGWCC 1 cut(s) 455
BmgT120I GGNCC 4 cut(s) 369, 370, 436, 455
BmiI GGNNCC 4 cut(s) 39, 370, 371, 438
BmrFI CCNGG 3 cut(s) 18, 51, 334
BplI GAGNNNNNCTC 2 cut(s) 425, 457
BpuEI CTTGAG 1 cut(s) 518
BsaJI CCNNGG 3 cut(s) 72, 275, 458
Bse118I RCCGGY 2 cut(s) 40, 139
BseBI CCWGG 3 cut(s) 18, 51, 334
BseDI CCNNGG 3 cut(s) 72, 275, 458
BseSI GKGCMC 1 cut(s) 373
BseXI GCAGC 1 cut(s) 397
BshFI GGCC 2 cut(s) 371, 437
BshNI GGYRCC 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 417
BsiSI CCGG 2 cut(s) 41, 140
BsmI GAATGC 1 cut(s) 446
BsnI GGCC 2 cut(s) 371, 437
Bsp120I GGGCCC 1 cut(s) 369
Bsp1286I GDGCHC 2 cut(s) 373, 417
Bsp19I CCATGG 1 cut(s) 72
BspACI CCGC 1 cut(s) 162
BspANI GGCC 2 cut(s) 371, 437
BspHI TCATGA 1 cut(s) 466
BspLI GGNNCC 4 cut(s) 39, 370, 371, 438
BspQI GCTCTTC 1 cut(s) 15
BspT107I GGYRCC 1 cut(s) 37
BsrFI RCCGGY 2 cut(s) 40, 139
BssAI RCCGGY 2 cut(s) 40, 139
BssECI CCNNGG 3 cut(s) 72, 275, 458
BssT1I CCWWGG 2 cut(s) 72, 458
Bst2UI CCWGG 3 cut(s) 18, 51, 334
Bst4CI ACNGT 3 cut(s) 136, 276, 289
Bst6I CTCTTC 3 cut(s) 15, 335, 426
BstDSI CCRYGG 2 cut(s) 72, 275
BstEII GGTNACC 1 cut(s) 312
BstH2I RGCGCY 1 cut(s) 80
BstHHI GCGC 1 cut(s) 79
BstMWI GCNNNNNNNGC 2 cut(s) 74, 443
BstNI CCWGG 3 cut(s) 18, 51, 334
BstPI GGTNACC 1 cut(s) 312
BstSCI CCNGG 3 cut(s) 16, 49, 332
BstSLI GKGCMC 1 cut(s) 373
BstV1I GCAGC 1 cut(s) 397
BstXI CCANNNNNNTGG 1 cut(s) 79
BsuRI GGCC 2 cut(s) 371, 437
BtgI CCRYGG 2 cut(s) 72, 275
BtsIMutI CAGTG 1 cut(s) 141
CciI TCATGA 1 cut(s) 466
CfoI GCGC 1 cut(s) 79
Cfr10I RCCGGY 2 cut(s) 40, 139
Cfr13I GGNCC 4 cut(s) 369, 370, 436, 455
Csp6I GTAC 2 cut(s) 486, 565
CviAII CATG 2 cut(s) 73, 467
CviQI GTAC 2 cut(s) 486, 565
DraI TTTAAA 2 cut(s) 103, 210
Eam1104I CTCTTC 3 cut(s) 15, 335, 426
EarI CTCTTC 3 cut(s) 15, 335, 426
Eco130I CCWWGG 2 cut(s) 72, 458
Eco24I GRGCYC 1 cut(s) 373
Eco47I GGWCC 1 cut(s) 455
Eco57I CTGAAG 1 cut(s) 450
Eco91I GGTNACC 1 cut(s) 312
EcoO109I RGGNCCY 2 cut(s) 369, 436
EcoO65I GGTNACC 1 cut(s) 312
EcoRII CCWGG 3 cut(s) 16, 49, 332
EcoT14I CCWWGG 2 cut(s) 72, 458
EcoT38I GRGCYC 1 cut(s) 373
ErhI CCWWGG 2 cut(s) 72, 458
FaeI CATG 2 cut(s) 76, 470
FaiI YATR 4 cut(s) 29, 74, 468, 491
FatI CATG 2 cut(s) 72, 466
FauI CCCGC 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 386
FriOI GRGCYC 1 cut(s) 373
Fsp4HI GCNGC 1 cut(s) 386
FspBI CTAG 2 cut(s) 360, 459
GlaI GCGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 386
HaeII RGCGCY 1 cut(s) 80
HaeIII GGCC 2 cut(s) 371, 437
HapII CCGG 2 cut(s) 41, 140
HhaI GCGC 1 cut(s) 79
Hin1II CATG 2 cut(s) 76, 470
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HindIII AAGCTT 1 cut(s) 240
HinfI GANTC 4 cut(s) 343, 463, 523, 558
HpaII CCGG 2 cut(s) 41, 140
HphI GGTGA 3 cut(s) 294, 306, 407
Hpy166II GTNNAC 3 cut(s) 302, 357, 567
Hpy188I TCNGA 2 cut(s) 430, 528
Hpy188III TCNNGA 1 cut(s) 467
Hpy8I GTNNAC 3 cut(s) 302, 357, 567
HpyCH4III ACNGT 3 cut(s) 136, 276, 289
HpyCH4V TGCA 2 cut(s) 385, 446
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 443
Hsp92II CATG 2 cut(s) 76, 470
HspAI GCGC 1 cut(s) 77
LguI GCTCTTC 1 cut(s) 15
Lsp1109I GCAGC 1 cut(s) 397
MaeI CTAG 2 cut(s) 360, 459
MaeIII GTNAC 4 cut(s) 82, 130, 245, 312
MboII GAAGA 4 cut(s) 275, 349, 352, 443
MhlI GDGCHC 2 cut(s) 373, 417
MluCI AATT 1 cut(s) 63
MlyI GAGTC 2 cut(s) 352, 567
MmeI TCCRAC 1 cut(s) 542
MnlI CCTC 6 cut(s) 28, 79, 394, 427, 451, 493
MseI TTAA 4 cut(s) 102, 209, 270, 324
MslI CAYNNNNRTG 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 2 cut(s) 41, 140
MspR9I CCNGG 3 cut(s) 18, 51, 334
Mva1269I GAATGC 1 cut(s) 446
MvaI CCWGG 3 cut(s) 18, 51, 334
MwoI GCNNNNNNNGC 2 cut(s) 74, 443
NcoI CCATGG 1 cut(s) 72
NlaIII CATG 2 cut(s) 76, 470
NlaIV GGNNCC 4 cut(s) 39, 370, 371, 438
NmuCI GTSAC 2 cut(s) 130, 312
OliI CACNNNNGTG 1 cut(s) 29
PagI TCATGA 1 cut(s) 466
PciSI GCTCTTC 1 cut(s) 15
PctI GAATGC 1 cut(s) 446
PfeI GAWTC 2 cut(s) 463, 523
PkrI GCNGC 1 cut(s) 387
PleI GAGTC 2 cut(s) 351, 566
PpsI GAGTC 2 cut(s) 351, 566
Psp6I CCWGG 3 cut(s) 16, 49, 332
PspEI GGTNACC 1 cut(s) 312
PspGI CCWGG 3 cut(s) 16, 49, 332
PspN4I GGNNCC 4 cut(s) 39, 370, 371, 438
PspOMI GGGCCC 1 cut(s) 369
PspPI GGNCC 4 cut(s) 369, 370, 436, 455
PvuII CAGCTG 1 cut(s) 128
RsaI GTAC 2 cut(s) 487, 566
RsaNI GTAC 2 cut(s) 486, 565
RseI CAYNNNNRTG 1 cut(s) 29
SapI GCTCTTC 1 cut(s) 15
SaqAI TTAA 4 cut(s) 102, 209, 270, 324
SatI GCNGC 1 cut(s) 386
Sau96I GGNCC 4 cut(s) 369, 370, 436, 455
SchI GAGTC 2 cut(s) 352, 567
ScrFI CCNGG 3 cut(s) 18, 51, 334
SduI GDGCHC 2 cut(s) 373, 417
SetI ASST 7 cut(s) 10, 19, 130, 244, 261, 285, 390
SinI GGWCC 1 cut(s) 455
SmiMI CAYNNNNRTG 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
SpeI ACTAGT 1 cut(s) 359
Sse9I AATT 1 cut(s) 63
SsiI CCGC 1 cut(s) 162
SspMI CTAG 2 cut(s) 360, 459
StyD4I CCNGG 3 cut(s) 16, 49, 332
StyI CCWWGG 2 cut(s) 72, 458
TaaI ACNGT 3 cut(s) 136, 276, 289
TaqI TCGA 2 cut(s) 417, 450
TasI AATT 1 cut(s) 63
TatI WGTACW 1 cut(s) 564
TfiI GAWTC 2 cut(s) 463, 523
Tru1I TTAA 4 cut(s) 102, 209, 270, 324
Tru9I TTAA 4 cut(s) 102, 209, 270, 324
TscAI CASTG 1 cut(s) 141
TseFI GTSAC 2 cut(s) 130, 312
TseI GCWGC 1 cut(s) 385
Tsp45I GTSAC 2 cut(s) 130, 312
TspDTI ATGAA 2 cut(s) 455, 483
TspRI CASTG 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 455
XmaJI CCTAGG 1 cut(s) 458
XspI CTAG 2 cut(s) 360, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.