Rorug05G0554400

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000109
Physical Location & Seq
Forward (+)
74200652 .. 74213680
13029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0554400.1

Sequence Viewer

Length: 1773 bp
ATGATGCGCAGCCGCAGCAGCACAAGAGGTATGGTTTCTTGTCTTCCCTCTTCTCATCTTGTTGCTGCTGTTCCCCTCATCAACACTATGATGGCTTTGTTTCATTCGAGACCGAGACAAACCCCCCATCTAGGAAATCGTCGACCCAATATTATTGTGAGTAACGTTGAGGACGCCTTGAAGGTGTTCGATGAAATGCTTCACTCGCGTCCTCTGCCTTCTTCTGTTGTCCCTTTCAATCAAATCTTGGGTCGACTTGTCAAATTGAAACACTATTCTGCAGTCATATCTTTGAATAGGCAAATGCTTCTGCGTCGAATTGTTCCTGATCACTATACTCTAAACACTATCATCAATTGCTACTGCCGTTTGAATCAGATGGGGTTTGGCCTATCTGTCTTAGGACAGTTCTTCAAATTCGGTTTTCAACCGAATGCTATTACCTTCAACACTCTGATCCACGGCTTTGTTCTCCATAATCAACTGCCTGAGGCTGCACGAATTTTCACCAAAATGCTGGAGGGAGAGCCCGATGTGTTTACTTTCAACACTCTAATAAAGGGCTCTTGCAAGATGGGAAACAACAGCGCGGCTATGCAATTACTTGGGAAGATGGAAGAAAGAGGATGCAAGCCTGACATTGTTTCCTATAGCACCATCATCGACAGTCTTTGTAAGGATACCCTAGTTGAAGATGCAATGAACCTCTTCTCAGAAATGATTGGGAGAGGTATTGCTCCGGATGTTGTTACTTACACATCTTTGATTCGAGGAGTTTGCAATATAGGCCGGTGGAAACAAGCTACGAGGTTGCTTGATGAAATGTTGAGTAAAGGCATCTTTCCGAATGTCGTCACCTTCAATGTCTTGGTTGATACATTCTGTAAGGAAGGGATGGTTGTGGAAGCCAAAAATGTGGTTGACATGATGATTCAAAGAGGTATTGAGCCTGATGCGATTACATACAGTTCCCTTATGGATGGTTACTGTTTGCGAGGAGAAATGGACAAGGCAAAACAAGTCTTTGATCTGATGATTAGCAAAGGATCCATGGTTAATGTTTGGAGTTGTAACATATTAATTAATGGATATTGCAAGGCTAAAAAGATCGATCAGGCTAACAAAATTTTCAAGCAAATGCGTCGTATGGAAGTTGTTCCTGATAACGTGACTTATAGCACTCTTATTGATGGTCTTTACAAAGTGGGGAGAATCCAAGAAGCAGAAAAGTTATTCTCTGAGATGCAAGGTTGTGGCCAGCTTCCAGATGTTCAAACTTATGCTGTGATACTTGATGGCCTGTGTAACAACCAGCAACTTTCTACGGCAGTAGAATTGCTTAGAGAGATGGAAGCCAGAAAACTGGAACTCAGTATTGTAATTTACACTCTTGTTATTGAAGGTTTGTGCAAAGCTGGAGAAGTTCAGTCTGCAAAAGATCTCTTCTATGGTTTATCATCAAAAGGAGTTCAGCCTATTGTGAGAACATACACTGTAATGATTCATGGACTTTGTCATCATGGCTTAATAATTGAGGCAGAAAAGCTGCTGAGAGAAATGGGAGGGAAAGGATGTTCTCCAAATGGTTGGACCTATAACACCATTGTCCGGGGGTTGTTAAATAACAACAAGACATCATGGGCTATGGAACTTATTAAAGAAATGGTGGACTTGGGTTTCTCTGCAGATGCATCAACTATGGAATTGATAGTTGGTTTATTGTCTAAGGATATAGTAGATGCAGCTTTGTTGCCGCTATTAAAAGATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

590

Amino Acids

65.86

Weight (kDa)

8.47

Isoelectric Point (pI)

33.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 75 - 123 2.4e-06 PPR repeat family
PPR_1 PF12854 141 - 172 2.8e-06 PPR repeat
PPR_3 PF13812 176 - 222 9.2e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 176 - 206 3e-10 PPR repeat
PPR_2 PF13041 177 - 226 4.4e-17 PPR repeat family
PPR PF01535 180 - 210 3.4e-06 PPR repeat
PPR_1 PF12854 208 - 240 8.7e-13 PPR repeat
PPR_2 PF13041 212 - 261 1.3e-17 PPR repeat family
PPR_long PF17177 213 - 346 1.4e-09 Pentacotripeptide-repeat region of PRORP
PPR PF01535 215 - 245 1.4e-06 PPR repeat
PPR_3 PF13812 236 - 295 3.2e-13 Pentatricopeptide repeat domain
PPR_1 PF12854 243 - 275 2e-11 PPR repeat
PPR_2 PF13041 248 - 296 1.4e-16 PPR repeat family
PPR PF01535 250 - 280 2e-06 PPR repeat
MRP-S27 PF10037 251 - 313 3.4e-07 Mitochondrial 28S ribosomal protein S27
PPR_1 PF12854 278 - 310 6.4e-11 PPR repeat
PPR_2 PF13041 282 - 330 7.3e-16 PPR repeat family
PPR PF01535 285 - 315 9.2e-06 PPR repeat
PPR_1 PF12854 313 - 345 1.3e-11 PPR repeat
PPR PF01535 320 - 349 6e-08 PPR repeat
PPR_2 PF13041 324 - 363 8.7e-07 PPR repeat family
PPR_long PF17177 335 - 458 1.8e-08 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 335 - 449 2.1e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 348 - 396 7.9e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 349 - 381 3.1e-07 PPR repeat
PPR_2 PF13041 353 - 401 4.4e-17 PPR repeat family
PPR PF01535 356 - 383 4.9e-07 PPR repeat
PPR_1 PF12854 384 - 416 2.8e-10 PPR repeat
PPR PF01535 390 - 419 6.1e-08 PPR repeat
TPR_24 PF23276 390 - 482 8.5e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 394 - 436 6.9e-12 PPR repeat family
PPR_1 PF12854 419 - 451 4.7e-07 PPR repeat
PPR_2 PF13041 458 - 506 1.1e-11 PPR repeat family
PPR_1 PF12854 488 - 520 1.5e-08 PPR repeat
PPR_2 PF13041 495 - 540 1.1e-12 PPR repeat family
PPR PF01535 496 - 525 2.2e-08 PPR repeat
PPR_1 PF12854 523 - 556 2.7e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 8
AccI GTMKAC 2 cut(s) 142, 253
AccII CGCG 2 cut(s) 208, 590
AccIII TCCGGA 1 cut(s) 739
AciI CCGC 3 cut(s) 13, 590, 1754
AclI AACGTT 1 cut(s) 165
AclWI GGATC 3 cut(s) 451, 1041, 1054
AcoI YGGCCR 1 cut(s) 1255
AcsI RAATTY 3 cut(s) 416, 501, 1125
AcyI GRCGYC 1 cut(s) 174
AfiI CCNNNNNNNGG 2 cut(s) 131, 1608
AjuI GAANNNNNNNTTGG 2 cut(s) 1695, 1727
AloI GAACNNNNNNTCC 2 cut(s) 1558, 1590
AluBI AGCT 5 cut(s) 803, 1261, 1415, 1546, 1745
AluI AGCT 5 cut(s) 803, 1261, 1415, 1546, 1745
Alw26I GTCTC 2 cut(s) 103, 109
AlwI GGATC 3 cut(s) 451, 1041, 1054
Aor13HI TCCGGA 1 cut(s) 739
AoxI GGCC 4 cut(s) 388, 787, 1255, 1297
ApeKI GCWGC 7 cut(s) 9, 15, 18, 65, 494, 1546, 1742
ApoI RAATTY 3 cut(s) 416, 501, 1125
ArsI GACNNNNNNTTYG 2 cut(s) 235, 267
AseI ATTAAT 2 cut(s) 1079, 1083
Asp700I GAANNNNTTC 4 cut(s) 185, 198, 707, 1155
AspLEI GCGC 2 cut(s) 9, 590
AspS9I GGNCC 1 cut(s) 1590
AsuC2I CCSGG 1 cut(s) 1610
AsuHPI GGTGA 2 cut(s) 499, 847
AvaII GGWCC 1 cut(s) 1590
AxyI CCTNAGG 1 cut(s) 489
BaeI ACNNNNGTAYC 2 cut(s) 672, 705
BalI TGGCCA 1 cut(s) 1257
BamHI GGATCC 1 cut(s) 1046
BanII GRGCYC 2 cut(s) 531, 566
BbsI GAAGAC 1 cut(s) 35
BbvI GCAGC 7 cut(s) 21, 27, 30, 52, 481, 1533, 1754
BceAI ACGGC 3 cut(s) 351, 478, 1341
BcgI CGANNNNNNTGC 6 cut(s) 643, 677, 759, 793, 1124, 1158
BciVI GTATCC 1 cut(s) 673
BclI TGATCA 1 cut(s) 328
BcnI CCSGG 1 cut(s) 1610
BcoDI GTCTC 2 cut(s) 103, 109
BfaI CTAG 2 cut(s) 131, 686
BfmI CTRYAG 3 cut(s) 279, 649, 1683
BfuI GTATCC 1 cut(s) 673
BglII AGATCT 1 cut(s) 1438
Bme1390I CCNGG 1 cut(s) 1610
Bme18I GGWCC 1 cut(s) 1590
BmgT120I GGNCC 1 cut(s) 1590
BmiI GGNNCC 1 cut(s) 1048
BmrFI CCNGG 1 cut(s) 1610
BmsI GCATC 8 cut(s) 617, 685, 846, 943, 1233, 1678, 1700, 1729
BpiI GAAGAC 1 cut(s) 35
BpmI CTGGAG 2 cut(s) 539, 1437
BpuMI CCSGG 1 cut(s) 1610
Bsa29I ATCGAT 1 cut(s) 1110
BsaHI GRCGYC 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 103
BsaJI CCNNGG 3 cut(s) 460, 1050, 1609
BsaWI WCCGGW 1 cut(s) 739
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 1608
Bse118I RCCGGY 1 cut(s) 789
Bse1I ACTGG 1 cut(s) 1368
Bse21I CCTNAGG 1 cut(s) 489
Bse3DI GCAATG 1 cut(s) 705
BseAI TCCGGA 1 cut(s) 739
BseCI ATCGAT 1 cut(s) 1110
BseDI CCNNGG 3 cut(s) 460, 1050, 1609
BseGI GGATG 5 cut(s) 632, 748, 900, 985, 1577
BseLI CCNNNNNNNGG 2 cut(s) 131, 1608
BseMI GCAATG 1 cut(s) 705
BseMII CTCAG 5 cut(s) 480, 726, 1230, 1384, 1541
BseNI ACTGG 1 cut(s) 1368
BseRI GAGGAG 2 cut(s) 786, 1011
BseXI GCAGC 7 cut(s) 21, 27, 30, 52, 481, 1533, 1754
BsgI GTGCAG 1 cut(s) 480
Bsh1236I CGCG 2 cut(s) 208, 590
BshFI GGCC 4 cut(s) 390, 789, 1257, 1299
BshVI ATCGAT 1 cut(s) 1110
BsiSI CCGG 3 cut(s) 740, 790, 1609
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 2 cut(s) 131, 1608
BsmAI GTCTC 2 cut(s) 103, 109
BsmFI GGGAC 1 cut(s) 215
BsmI GAATGC 1 cut(s) 439
BsnI GGCC 4 cut(s) 390, 789, 1257, 1299
Bso31I GGTCTC 1 cut(s) 103
Bsp1286I GDGCHC 2 cut(s) 531, 566
Bsp13I TCCGGA 1 cut(s) 739
Bsp143I GATC 7 cut(s) 328, 456, 1027, 1046, 1107, 1111, 1438
Bsp19I CCATGG 1 cut(s) 1050
BspACI CCGC 3 cut(s) 13, 590, 1754
BspANI GGCC 4 cut(s) 390, 789, 1257, 1299
BspCNI CTCAG 5 cut(s) 481, 725, 1231, 1383, 1542
BspDI ATCGAT 1 cut(s) 1110
BspEI TCCGGA 1 cut(s) 739
BspFNI CGCG 2 cut(s) 208, 590
BspHI TCATGA 1 cut(s) 1769
BspLI GGNNCC 1 cut(s) 1048
BspMAI CTGCAG 2 cut(s) 283, 1687
BspPI GGATC 3 cut(s) 451, 1041, 1054
BspTNI GGTCTC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 705
BsrFI RCCGGY 1 cut(s) 789
BsrI ACTGG 1 cut(s) 1368
BssAI RCCGGY 1 cut(s) 789
BssECI CCNNGG 3 cut(s) 460, 1050, 1609
BssMI GATC 7 cut(s) 328, 456, 1027, 1046, 1107, 1111, 1438
BssNI GRCGYC 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 1050
Bst4CI ACNGT 5 cut(s) 408, 668, 968, 989, 1495
Bst6I CTCTTC 3 cut(s) 55, 713, 1448
BstACI GRCGYC 1 cut(s) 174
BstC8I GCNNGC 2 cut(s) 632, 1259
BstDEI CTNAG 8 cut(s) 400, 489, 712, 1239, 1340, 1370, 1550, 1725
BstDSI CCRYGG 2 cut(s) 460, 1050
BstF5I GGATG 5 cut(s) 632, 748, 900, 985, 1577
BstFNI CGCG 2 cut(s) 208, 590
BstHHI GCGC 2 cut(s) 9, 590
BstKTI GATC 7 cut(s) 331, 459, 1030, 1049, 1110, 1114, 1441
BstMAI GTCTC 2 cut(s) 103, 109
BstMBI GATC 7 cut(s) 328, 456, 1027, 1046, 1107, 1111, 1438
BstMWI GCNNNNNNNGC 5 cut(s) 15, 18, 205, 214, 786
BstSCI CCNGG 1 cut(s) 1608
BstSFI CTRYAG 3 cut(s) 279, 649, 1683
BstUI CGCG 2 cut(s) 208, 590
BstV1I GCAGC 7 cut(s) 21, 27, 30, 52, 481, 1533, 1754
BstV2I GAAGAC 1 cut(s) 35
BstX2I RGATCY 2 cut(s) 1046, 1438
BstXI CCANNNNNNTGG 4 cut(s) 517, 916, 1363, 1587
BstYI RGATCY 2 cut(s) 1046, 1438
Bsu15I ATCGAT 1 cut(s) 1110
Bsu36I CCTNAGG 1 cut(s) 489
BsuI GTATCC 1 cut(s) 673
BsuRI GGCC 4 cut(s) 390, 789, 1257, 1299
BsuTUI ATCGAT 1 cut(s) 1110
BtgI CCRYGG 2 cut(s) 460, 1050
BtsCI GGATG 5 cut(s) 632, 748, 900, 985, 1577
BtsIMutI CAGTG 1 cut(s) 1491
Cac8I GCNNGC 2 cut(s) 632, 1259
CciI TCATGA 1 cut(s) 1769
CfoI GCGC 2 cut(s) 9, 590
Cfr10I RCCGGY 1 cut(s) 789
Cfr13I GGNCC 1 cut(s) 1590
ClaI ATCGAT 1 cut(s) 1110
CseI GACGC 4 cut(s) 182, 197, 302, 1130
CviAII CATG 6 cut(s) 925, 1051, 1505, 1520, 1638, 1770
DdeI CTNAG 8 cut(s) 400, 489, 712, 1239, 1340, 1370, 1550, 1725
DpnI GATC 7 cut(s) 330, 458, 1029, 1048, 1109, 1113, 1440
DpnII GATC 7 cut(s) 328, 456, 1027, 1046, 1107, 1111, 1438
EaeI YGGCCR 1 cut(s) 1255
Eam1104I CTCTTC 3 cut(s) 55, 713, 1448
EarI CTCTTC 3 cut(s) 55, 713, 1448
Eco130I CCWWGG 1 cut(s) 1050
Eco24I GRGCYC 2 cut(s) 531, 566
Eco31I GGTCTC 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 1590
Eco81I CCTNAGG 1 cut(s) 489
EcoT14I CCWWGG 1 cut(s) 1050
EcoT22I ATGCAT 1 cut(s) 1693
EcoT38I GRGCYC 2 cut(s) 531, 566
ErhI CCWWGG 1 cut(s) 1050
FaeI CATG 6 cut(s) 928, 1054, 1508, 1523, 1641, 1773
FaqI GGGAC 1 cut(s) 215
FatI CATG 6 cut(s) 924, 1050, 1504, 1519, 1637, 1769
FbaI TGATCA 1 cut(s) 328
FblI GTMKAC 2 cut(s) 142, 253
FokI GGATG 5 cut(s) 639, 755, 907, 992, 1584
FriOI GRGCYC 2 cut(s) 531, 566
FspBI CTAG 2 cut(s) 131, 686
FspI TGCGCA 1 cut(s) 8
GlaI GCGC 2 cut(s) 8, 589
GsuI CTGGAG 2 cut(s) 539, 1437
HaeIII GGCC 4 cut(s) 390, 789, 1257, 1299
HapII CCGG 3 cut(s) 740, 790, 1609
HgaI GACGC 4 cut(s) 182, 197, 302, 1130
HhaI GCGC 2 cut(s) 9, 590
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 6 cut(s) 928, 1054, 1508, 1523, 1641, 1773
Hin6I GCGC 2 cut(s) 7, 588
HinP1I GCGC 2 cut(s) 7, 588
HincII GTYRAC 3 cut(s) 143, 254, 922
HindII GTYRAC 3 cut(s) 143, 254, 922
HinfI GANTC 6 cut(s) 373, 766, 931, 1212, 1501, 1766
HpaII CCGG 3 cut(s) 740, 790, 1609
HphI GGTGA 2 cut(s) 499, 847
Hpy166II GTNNAC 5 cut(s) 143, 254, 540, 922, 1669
Hpy188I TCNGA 6 cut(s) 378, 456, 715, 846, 1032, 1240
Hpy188III TCNNGA 6 cut(s) 108, 326, 740, 1160, 1265, 1770
Hpy8I GTNNAC 5 cut(s) 143, 254, 540, 922, 1669
Hpy99I CGWCG 3 cut(s) 144, 318, 1146
HpyAV CCTTC 6 cut(s) 175, 228, 454, 868, 884, 1394
HpyCH4III ACNGT 5 cut(s) 408, 668, 968, 989, 1495
HpyCH4IV ACGT 2 cut(s) 165, 1167
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 18, 205, 214, 786
HpyF3I CTNAG 8 cut(s) 400, 489, 712, 1239, 1340, 1370, 1550, 1725
HpySE526I ACGT 2 cut(s) 165, 1167
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 6 cut(s) 928, 1054, 1508, 1523, 1641, 1773
HspAI GCGC 2 cut(s) 7, 588
Kpn2I TCCGGA 1 cut(s) 739
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 7 cut(s) 328, 456, 1027, 1046, 1107, 1111, 1438
LmnI GCTCC 1 cut(s) 742
Lsp1109I GCAGC 7 cut(s) 21, 27, 30, 52, 481, 1533, 1754
LweI GCATC 8 cut(s) 617, 685, 846, 943, 1233, 1678, 1700, 1729
MaeI CTAG 2 cut(s) 131, 686
MaeII ACGT 2 cut(s) 165, 1167
MaeIII GTNAC 7 cut(s) 161, 748, 853, 983, 1070, 1168, 1304
MalI GATC 7 cut(s) 330, 458, 1029, 1048, 1109, 1113, 1440
MboI GATC 7 cut(s) 328, 456, 1027, 1046, 1107, 1111, 1438
MboII GAAGA 9 cut(s) 35, 42, 213, 403, 622, 629, 700, 704, 1435
MfeI CAATTG 1 cut(s) 355
MflI RGATCY 2 cut(s) 1046, 1438
MhlI GDGCHC 2 cut(s) 531, 566
MlsI TGGCCA 1 cut(s) 1257
MluNI TGGCCA 1 cut(s) 1257
MmeI TCCRAC 1 cut(s) 1568
Mox20I TGGCCA 1 cut(s) 1257
Mph1103I ATGCAT 1 cut(s) 1693
MroI TCCGGA 1 cut(s) 739
MroXI GAANNNNTTC 4 cut(s) 185, 198, 707, 1155
MscI TGGCCA 1 cut(s) 1257
MseI TTAA 7 cut(s) 1056, 1079, 1083, 1526, 1619, 1656, 1760
MslI CAYNNNNRTG 3 cut(s) 89, 512, 1496
Msp20I TGGCCA 1 cut(s) 1257
MspI CCGG 3 cut(s) 740, 790, 1609
MspR9I CCNGG 1 cut(s) 1610
MunI CAATTG 1 cut(s) 355
Mva1269I GAATGC 1 cut(s) 439
MvnI CGCG 2 cut(s) 208, 590
MwoI GCNNNNNNNGC 5 cut(s) 15, 18, 205, 214, 786
NciI CCSGG 1 cut(s) 1610
NcoI CCATGG 1 cut(s) 1050
NdeII GATC 7 cut(s) 328, 456, 1027, 1046, 1107, 1111, 1438
NlaIII CATG 6 cut(s) 928, 1054, 1508, 1523, 1641, 1773
NlaIV GGNNCC 1 cut(s) 1048
NmuCI GTSAC 2 cut(s) 853, 1168
NsbI TGCGCA 1 cut(s) 8
NsiI ATGCAT 1 cut(s) 1693
PacI TTAATTAA 1 cut(s) 1083
PagI TCATGA 1 cut(s) 1769
PctI GAATGC 1 cut(s) 439
PdmI GAANNNNTTC 4 cut(s) 185, 198, 707, 1155
PfeI GAWTC 6 cut(s) 373, 766, 931, 1212, 1501, 1766
PflFI GACNNNGTC 1 cut(s) 1512
PshBI ATTAAT 2 cut(s) 1079, 1083
Psp1406I AACGTT 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 1048
PspPI GGNCC 1 cut(s) 1590
PstI CTGCAG 2 cut(s) 283, 1687
PsuI RGATCY 2 cut(s) 1046, 1438
PsyI GACNNNGTC 1 cut(s) 1512
RseI CAYNNNNRTG 3 cut(s) 89, 512, 1496
SalI GTCGAC 2 cut(s) 141, 252
SaqAI TTAA 7 cut(s) 1056, 1079, 1083, 1526, 1619, 1656, 1760
Sau3AI GATC 7 cut(s) 328, 456, 1027, 1046, 1107, 1111, 1438
Sau96I GGNCC 1 cut(s) 1590
ScrFI CCNGG 1 cut(s) 1610
SduI GDGCHC 2 cut(s) 531, 566
SfaNI GCATC 8 cut(s) 617, 685, 846, 943, 1233, 1678, 1700, 1729
SfcI CTRYAG 3 cut(s) 279, 649, 1683
SinI GGWCC 1 cut(s) 1590
SmiMI CAYNNNNRTG 3 cut(s) 89, 512, 1496
SsiI CCGC 3 cut(s) 13, 590, 1754
SspI AATATT 1 cut(s) 151
SspMI CTAG 2 cut(s) 131, 686
StyD4I CCNGG 1 cut(s) 1608
StyI CCWWGG 1 cut(s) 1050
TaaI ACNGT 5 cut(s) 408, 668, 968, 989, 1495
TaiI ACGT 2 cut(s) 168, 1170
TaqI TCGA 8 cut(s) 107, 142, 189, 253, 316, 663, 769, 1110
TaqII GACCGA 1 cut(s) 127
TauI GCSGC 3 cut(s) 15, 593, 1756
TfiI GAWTC 6 cut(s) 373, 766, 931, 1212, 1501, 1766
Tru1I TTAA 7 cut(s) 1056, 1079, 1083, 1526, 1619, 1656, 1760
Tru9I TTAA 7 cut(s) 1056, 1079, 1083, 1526, 1619, 1656, 1760
TscAI CASTG 1 cut(s) 1498
TseFI GTSAC 2 cut(s) 853, 1168
TseI GCWGC 7 cut(s) 9, 15, 18, 65, 494, 1546, 1742
Tsp45I GTSAC 2 cut(s) 853, 1168
TspDTI ATGAA 6 cut(s) 92, 207, 716, 834, 1493, 1758
TspRI CASTG 1 cut(s) 1498
Tth111I GACNNNGTC 1 cut(s) 1512
VpaK11BI GGWCC 1 cut(s) 1590
VspI ATTAAT 2 cut(s) 1079, 1083
XapI RAATTY 3 cut(s) 416, 501, 1125
XmiI GTMKAC 2 cut(s) 142, 253
XmnI GAANNNNTTC 4 cut(s) 185, 198, 707, 1155
XspI CTAG 2 cut(s) 131, 686
Zsp2I ATGCAT 1 cut(s) 1693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.