RLG00000004616

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000109
Physical Location & Seq
Reverse (-)
60797687 .. 60798376
690 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004616

Sequence Viewer

Length: 492 bp
ATGGAACATCAGCGGTCGGGTTGCGGTGGCCCTCCGGAAGCACTGCAGGTCTCTATTGGTGCAAACACTAACCCTAGCTTGGTAGGGTCTGCTGCTCTGAGTCTTGCGGAGGTTTTGGCTCAGTCTACAGCACCTAATCTGTTTACTTCCGTGGCCAAGTCGACTTCACTCCAGGGTTTCTCGGCATCAGCTCTGGCGGCCCAACTGGCCAAAATCCCATCTCCGGTCCAGGGGGCTAGTGCGTCCATGCAAGCTGCGGTAGTGGTCCCATCTCTCAGTGGGAAGAAGAGACCGGCCTCTACAGCCCTCATGCAATATTCTAAGAGTAAGAAGACAGTTGAGGAGGCTCCTCAGGTGGAGGCCATTGAGCTTGGTTTTGAACCTGAATTGGCCCTGAAGAGAACACCAACCCTTACTGATAGGGAGGTTCACATGTCTTCTGGCAAAGGTTCTGAGTCTGAGGAATGCACTCCCATGGGTGCCCTCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

16.69

Weight (kDa)

5.74

Isoelectric Point (pI)

51.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 37
AccB1I GGYRCC 1 cut(s) 479
AccI GTMKAC 2 cut(s) 125, 161
AccIII TCCGGA 1 cut(s) 34
AciI CCGC 5 cut(s) 13, 24, 107, 197, 257
AcoI YGGCCR 2 cut(s) 153, 207
AcuI CTGAAG 1 cut(s) 416
AfiI CCNNNNNNNGG 3 cut(s) 79, 223, 230
AflIII ACRYGT 1 cut(s) 432
AgsI TTSAA 1 cut(s) 380
AjnI CCWGG 2 cut(s) 171, 228
AluBI AGCT 4 cut(s) 78, 191, 254, 370
AluI AGCT 4 cut(s) 78, 191, 254, 370
Alw26I GTCTC 2 cut(s) 55, 283
Aor13HI TCCGGA 1 cut(s) 34
AoxI GGCC 7 cut(s) 28, 153, 198, 207, 294, 360, 390
ApeKI GCWGC 2 cut(s) 92, 254
AspS9I GGNCC 5 cut(s) 29, 199, 226, 265, 391
AvaII GGWCC 2 cut(s) 226, 265
AxyI CCTNAGG 1 cut(s) 351
BaeGI GKGCMC 1 cut(s) 484
BalI TGGCCA 2 cut(s) 155, 209
BanI GGYRCC 1 cut(s) 479
BbsI GAAGAC 2 cut(s) 338, 429
BbvI GCAGC 2 cut(s) 79, 241
BccI CCATC 2 cut(s) 226, 277
BciT130I CCWGG 2 cut(s) 173, 230
BcoDI GTCTC 2 cut(s) 55, 283
BfaI CTAG 2 cut(s) 75, 237
BfmI CTRYAG 3 cut(s) 44, 126, 300
BfuAI ACCTGC 1 cut(s) 37
BglI GCCNNNNNGGC 1 cut(s) 206
BisI GCNGC 3 cut(s) 93, 198, 255
BlsI GCNGC 3 cut(s) 94, 199, 256
Bme1390I CCNGG 2 cut(s) 173, 230
Bme18I GGWCC 2 cut(s) 226, 265
BmgT120I GGNCC 5 cut(s) 29, 199, 226, 265, 391
BmiI GGNNCC 3 cut(s) 267, 348, 481
BmrFI CCNGG 2 cut(s) 173, 230
BmsI GCATC 1 cut(s) 194
BpiI GAAGAC 2 cut(s) 338, 429
BpmI CTGGAG 1 cut(s) 155
BsaI GGTCTC 2 cut(s) 55, 283
BsaJI CCNNGG 4 cut(s) 150, 172, 229, 474
BsaWI WCCGGW 2 cut(s) 34, 223
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 223, 230
Bse118I RCCGGY 1 cut(s) 292
Bse1I ACTGG 1 cut(s) 210
Bse21I CCTNAGG 1 cut(s) 351
BseAI TCCGGA 1 cut(s) 34
BseBI CCWGG 2 cut(s) 173, 230
BseDI CCNNGG 4 cut(s) 150, 172, 229, 474
BseLI CCNNNNNNNGG 3 cut(s) 79, 223, 230
BseMII CTCAG 6 cut(s) 89, 134, 289, 365, 444, 450
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 2 cut(s) 339, 356
BseSI GKGCMC 1 cut(s) 484
BseXI GCAGC 2 cut(s) 79, 241
Bsh1285I CGRYCG 1 cut(s) 17
BshFI GGCC 7 cut(s) 30, 155, 200, 209, 296, 362, 392
BshNI GGYRCC 1 cut(s) 479
BsiEI CGRYCG 1 cut(s) 17
BsiSI CCGG 3 cut(s) 35, 224, 293
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 3 cut(s) 79, 223, 230
BsmAI GTCTC 2 cut(s) 55, 283
BsmFI GGGAC 1 cut(s) 251
BsmI GAATGC 1 cut(s) 470
BsnI GGCC 7 cut(s) 30, 155, 200, 209, 296, 362, 392
Bso31I GGTCTC 2 cut(s) 55, 283
Bsp1286I GDGCHC 1 cut(s) 484
Bsp13I TCCGGA 1 cut(s) 34
Bsp19I CCATGG 1 cut(s) 474
BspACI CCGC 5 cut(s) 13, 24, 107, 197, 257
BspANI GGCC 7 cut(s) 30, 155, 200, 209, 296, 362, 392
BspCNI CTCAG 6 cut(s) 90, 133, 288, 364, 445, 451
BspEI TCCGGA 1 cut(s) 34
BspLI GGNNCC 3 cut(s) 267, 348, 481
BspMAI CTGCAG 1 cut(s) 48
BspMI ACCTGC 1 cut(s) 37
BspT107I GGYRCC 1 cut(s) 479
BspTNI GGTCTC 2 cut(s) 55, 283
BsrFI RCCGGY 1 cut(s) 292
BsrI ACTGG 1 cut(s) 210
BssAI RCCGGY 1 cut(s) 292
BssECI CCNNGG 4 cut(s) 150, 172, 229, 474
BssT1I CCWWGG 1 cut(s) 474
Bst2UI CCWGG 2 cut(s) 173, 230
Bst4CI ACNGT 1 cut(s) 337
Bst6I CTCTTC 2 cut(s) 281, 392
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 7 cut(s) 98, 120, 275, 321, 351, 453, 459
BstDSI CCRYGG 2 cut(s) 150, 474
BstMAI GTCTC 2 cut(s) 55, 283
BstMCI CGRYCG 1 cut(s) 17
BstMWI GCNNNNNNNGC 3 cut(s) 197, 206, 302
BstNI CCWGG 2 cut(s) 173, 230
BstNSI RCATGY 1 cut(s) 436
BstSCI CCNGG 2 cut(s) 171, 228
BstSFI CTRYAG 3 cut(s) 44, 126, 300
BstSLI GKGCMC 1 cut(s) 484
BstV1I GCAGC 2 cut(s) 79, 241
BstV2I GAAGAC 2 cut(s) 338, 429
Bsu36I CCTNAGG 1 cut(s) 351
BsuRI GGCC 7 cut(s) 30, 155, 200, 209, 296, 362, 392
BtgI CCRYGG 2 cut(s) 150, 474
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 2 cut(s) 41, 283
BveI ACCTGC 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 252
Cfr10I RCCGGY 1 cut(s) 292
Cfr13I GGNCC 5 cut(s) 29, 199, 226, 265, 391
CseI GACGC 1 cut(s) 231
CviAII CATG 4 cut(s) 247, 310, 433, 475
DdeI CTNAG 7 cut(s) 98, 120, 275, 321, 351, 453, 459
EaeI YGGCCR 2 cut(s) 153, 207
Eam1104I CTCTTC 2 cut(s) 281, 392
EarI CTCTTC 2 cut(s) 281, 392
Eco130I CCWWGG 1 cut(s) 474
Eco31I GGTCTC 2 cut(s) 55, 283
Eco47I GGWCC 2 cut(s) 226, 265
Eco57I CTGAAG 1 cut(s) 416
Eco81I CCTNAGG 1 cut(s) 351
EcoRII CCWGG 2 cut(s) 171, 228
EcoT14I CCWWGG 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 474
FaeI CATG 4 cut(s) 250, 313, 436, 478
FaiI YATR 4 cut(s) 248, 311, 434, 476
FaqI GGGAC 1 cut(s) 251
FatI CATG 4 cut(s) 246, 309, 432, 474
FblI GTMKAC 2 cut(s) 125, 161
Fnu4HI GCNGC 3 cut(s) 93, 198, 255
Fsp4HI GCNGC 3 cut(s) 93, 198, 255
FspBI CTAG 2 cut(s) 75, 237
GluI GCNGC 3 cut(s) 93, 198, 255
GsuI CTGGAG 1 cut(s) 155
HaeIII GGCC 7 cut(s) 30, 155, 200, 209, 296, 362, 392
HapII CCGG 3 cut(s) 35, 224, 293
HgaI GACGC 1 cut(s) 231
Hin1II CATG 4 cut(s) 250, 313, 436, 478
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HinfI GANTC 2 cut(s) 100, 455
HpaII CCGG 3 cut(s) 35, 224, 293
Hpy166II GTNNAC 4 cut(s) 126, 144, 162, 430
Hpy188I TCNGA 3 cut(s) 99, 454, 460
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 4 cut(s) 126, 144, 162, 430
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4V TGCA 5 cut(s) 46, 62, 250, 313, 468
HpyF10VI GCNNNNNNNGC 3 cut(s) 197, 206, 302
HpyF3I CTNAG 7 cut(s) 98, 120, 275, 321, 351, 453, 459
Hsp92II CATG 4 cut(s) 250, 313, 436, 478
Kpn2I TCCGGA 1 cut(s) 34
LmnI GCTCC 1 cut(s) 352
Lsp1109I GCAGC 2 cut(s) 79, 241
LweI GCATC 1 cut(s) 194
MaeI CTAG 2 cut(s) 75, 237
MboII GAAGA 5 cut(s) 295, 298, 343, 409, 429
MhlI GDGCHC 1 cut(s) 484
MlsI TGGCCA 2 cut(s) 155, 209
MluCI AATT 1 cut(s) 386
MluNI TGGCCA 2 cut(s) 155, 209
MlyI GAGTC 2 cut(s) 109, 464
Mox20I TGGCCA 2 cut(s) 155, 209
MroI TCCGGA 1 cut(s) 34
MscI TGGCCA 2 cut(s) 155, 209
MslI CAYNNNNRTG 1 cut(s) 473
Msp20I TGGCCA 2 cut(s) 155, 209
MspA1I CMGCKG 1 cut(s) 13
MspI CCGG 3 cut(s) 35, 224, 293
MspR9I CCNGG 2 cut(s) 173, 230
Mva1269I GAATGC 1 cut(s) 470
MvaI CCWGG 2 cut(s) 173, 230
MwoI GCNNNNNNNGC 3 cut(s) 197, 206, 302
NcoI CCATGG 1 cut(s) 474
NlaIII CATG 4 cut(s) 250, 313, 436, 478
NlaIV GGNNCC 3 cut(s) 267, 348, 481
NmeAIII GCCGAG 1 cut(s) 161
NspI RCATGY 1 cut(s) 436
PciI ACATGT 1 cut(s) 432
PctI GAATGC 1 cut(s) 470
PkrI GCNGC 3 cut(s) 94, 199, 256
PleI GAGTC 2 cut(s) 108, 463
PpsI GAGTC 2 cut(s) 108, 463
PscI ACATGT 1 cut(s) 432
Psp6I CCWGG 2 cut(s) 171, 228
PspGI CCWGG 2 cut(s) 171, 228
PspN4I GGNNCC 3 cut(s) 267, 348, 481
PspPI GGNCC 5 cut(s) 29, 199, 226, 265, 391
PstI CTGCAG 1 cut(s) 48
RseI CAYNNNNRTG 1 cut(s) 473
SalI GTCGAC 1 cut(s) 160
SatI GCNGC 3 cut(s) 93, 198, 255
Sau96I GGNCC 5 cut(s) 29, 199, 226, 265, 391
SchI GAGTC 2 cut(s) 109, 464
ScrFI CCNGG 2 cut(s) 173, 230
SduI GDGCHC 1 cut(s) 484
SfaNI GCATC 1 cut(s) 194
SfcI CTRYAG 3 cut(s) 44, 126, 300
SfiI GGCCNNNNNGGCC 1 cut(s) 206
SinI GGWCC 2 cut(s) 226, 265
SmiMI CAYNNNNRTG 1 cut(s) 473
Sse9I AATT 1 cut(s) 386
SsiI CCGC 5 cut(s) 13, 24, 107, 197, 257
SspI AATATT 1 cut(s) 317
SspMI CTAG 2 cut(s) 75, 237
StyD4I CCNGG 2 cut(s) 171, 228
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 1 cut(s) 337
TaqI TCGA 2 cut(s) 161, 486
TasI AATT 1 cut(s) 386
TauI GCSGC 1 cut(s) 200
TscAI CASTG 2 cut(s) 48, 283
TseI GCWGC 2 cut(s) 92, 254
TspGWI ACGGA 1 cut(s) 139
TspRI CASTG 2 cut(s) 48, 283
VpaK11BI GGWCC 2 cut(s) 226, 265
XceI RCATGY 1 cut(s) 436
XmiI GTMKAC 2 cut(s) 125, 161
XspI CTAG 2 cut(s) 75, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.