Rmu_sc0020578.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020578.1
OG0000109
Physical Location & Seq
Reverse (-)
2788 .. 3489
702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020578.1_g000002.1.cds

Sequence Viewer

Length: 702 bp
atgtttaccgaaggtgcggtggcgctgactggagcctctttgagagaggtagtcctcctagatagtctggtagttcacaaggggacgacgacaagggtacaaattctgcatgctttttcgaaccctgtggtatattcgctactgacctttgagttcacaacaggggatgaggcgaagctccaattcaagtacgagcagctggtcgggttttgcaaggtctgtgggcatctggagcacccctttgtcatctgcgctggtctacctgtagtagagattgtgagactatgccctaaccttaaccctcgagtttctgaaagagcaggtacatcatcaagctcaagttttgcgttgcccaatccaattcccaacccttttaaggcccaactgagatgcctcaaactttcccttcttggtaaggtggtggcacagctctcccgattccaaaaacgtgctccagttgctccactggttgatgtaactcctgctctctcttctacgttggctaagccaattgggaataaaagggctggtgatccactggtggtgattcagtatagtaaacgtgtgaagccggtggaaacagttgatggtactccatgcaacgagtcggtgagtttagggtttgaacaggaactggccatcaagagtgctaatggtatcatccttgtgtcgcctgcaaagaggctgaggtgggggacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

25.18

Weight (kDa)

9.43

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 311
AccI GTMKAC 1 cut(s) 259
AciI CCGC 1 cut(s) 17
AclWI GGATC 1 cut(s) 527
AcoI YGGCCR 1 cut(s) 636
AcsI RAATTY 1 cut(s) 102
AfaI GTAC 4 cut(s) 99, 191, 325, 592
AfiI CCNNNNNNNGG 1 cut(s) 376
AflIII ACRYGT 1 cut(s) 562
AgsI TTSAA 2 cut(s) 187, 626
AluBI AGCT 4 cut(s) 178, 199, 336, 430
AluI AGCT 4 cut(s) 178, 199, 336, 430
Alw21I GWGCWC 2 cut(s) 237, 454
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 1 cut(s) 527
AlwNI CAGNNNCTG 1 cut(s) 634
Ama87I CYCGRG 1 cut(s) 303
AoxI GGCC 2 cut(s) 378, 636
ApeKI GCWGC 1 cut(s) 196
ApoI RAATTY 1 cut(s) 102
AspLEI GCGC 2 cut(s) 25, 254
AspS9I GGNCC 1 cut(s) 379
AsuHPI GGTGA 3 cut(s) 542, 556, 622
AsuII TTCGAA 1 cut(s) 119
AvaI CYCGRG 1 cut(s) 303
BalI TGGCCA 1 cut(s) 638
Bbv12I GWGCWC 2 cut(s) 237, 454
BbvCI CCTCAGC 1 cut(s) 686
BbvI GCAGC 1 cut(s) 208
BccI CCATC 2 cut(s) 581, 647
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 1 cut(s) 59
BfmI CTRYAG 1 cut(s) 264
BfoI RGCGCY 1 cut(s) 26
BfuAI ACCTGC 1 cut(s) 311
BisI GCNGC 1 cut(s) 197
BlpI GCTNAGC 1 cut(s) 504
BlsI GCNGC 1 cut(s) 198
BmeT110I CYCGRG 1 cut(s) 303
BmgT120I GGNCC 1 cut(s) 379
BmiI GGNNCC 1 cut(s) 34
BmsI GCATC 2 cut(s) 235, 380
BpmI CTGGAG 3 cut(s) 51, 251, 438
Bpu10I CCTNAGC 1 cut(s) 686
Bpu1102I GCTNAGC 1 cut(s) 504
Bpu14I TTCGAA 1 cut(s) 119
BpuEI CTTGAG 1 cut(s) 322
Bsc4I CCNNNNNNNGG 1 cut(s) 376
Bse118I RCCGGY 1 cut(s) 571
Bse1I ACTGG 5 cut(s) 34, 455, 471, 543, 639
BseGI GGATG 2 cut(s) 172, 660
BseLI CCNNNNNNNGG 1 cut(s) 376
BseMII CTCAG 2 cut(s) 377, 677
BseNI ACTGG 5 cut(s) 34, 455, 471, 543, 639
BseXI GCAGC 1 cut(s) 208
BshFI GGCC 2 cut(s) 380, 638
BsiHKAI GWGCWC 2 cut(s) 237, 454
BsiHKCI CYCGRG 1 cut(s) 303
BsiSI CCGG 1 cut(s) 572
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 376
BsmAI GTCTC 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 2 cut(s) 380, 638
BsoBI CYCGRG 1 cut(s) 303
Bsp119I TTCGAA 1 cut(s) 119
Bsp1286I GDGCHC 2 cut(s) 237, 454
Bsp143I GATC 1 cut(s) 532
Bsp1720I GCTNAGC 1 cut(s) 504
BspACI CCGC 1 cut(s) 17
BspANI GGCC 2 cut(s) 380, 638
BspCNI CTCAG 2 cut(s) 378, 678
BspLI GGNNCC 1 cut(s) 34
BspMI ACCTGC 1 cut(s) 311
BspPI GGATC 1 cut(s) 527
BspT104I TTCGAA 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 571
BsrI ACTGG 5 cut(s) 34, 455, 471, 543, 639
BssAI RCCGGY 1 cut(s) 571
BssMI GATC 1 cut(s) 532
Bst4CI ACNGT 1 cut(s) 583
Bst6I CTCTTC 1 cut(s) 496
BstBI TTCGAA 1 cut(s) 119
BstC8I GCNNGC 2 cut(s) 111, 675
BstDEI CTNAG 3 cut(s) 386, 504, 686
BstF5I GGATG 2 cut(s) 172, 660
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 2 cut(s) 25, 254
BstKTI GATC 1 cut(s) 535
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 1 cut(s) 532
BstMWI GCNNNNNNNGC 2 cut(s) 232, 458
BstNSI RCATGY 1 cut(s) 113
BstSFI CTRYAG 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 208
BsuRI GGCC 2 cut(s) 380, 638
BtsCI GGATG 2 cut(s) 172, 660
BtsIMutI CAGTG 2 cut(s) 464, 536
BveI ACCTGC 1 cut(s) 311
Cac8I GCNNGC 2 cut(s) 111, 675
CaiI CAGNNNCTG 1 cut(s) 634
CfoI GCGC 2 cut(s) 25, 254
Cfr10I RCCGGY 1 cut(s) 571
Cfr13I GGNCC 1 cut(s) 379
Csp6I GTAC 4 cut(s) 98, 190, 324, 591
CspCI CAANNNNNGTGG 2 cut(s) 202, 237
CviAII CATG 2 cut(s) 110, 597
CviQI GTAC 4 cut(s) 98, 190, 324, 591
DdeI CTNAG 3 cut(s) 386, 504, 686
DpnI GATC 1 cut(s) 534
DpnII GATC 1 cut(s) 532
EaeI YGGCCR 1 cut(s) 636
Eam1104I CTCTTC 1 cut(s) 496
EarI CTCTTC 1 cut(s) 496
Eco88I CYCGRG 1 cut(s) 303
FaeI CATG 2 cut(s) 113, 600
FaiI YATR 5 cut(s) 111, 133, 286, 555, 598
FaqI GGGAC 1 cut(s) 97
FatI CATG 2 cut(s) 109, 596
FblI GTMKAC 1 cut(s) 259
Fnu4HI GCNGC 1 cut(s) 197
FokI GGATG 2 cut(s) 179, 647
Fsp4HI GCNGC 1 cut(s) 197
FspBI CTAG 1 cut(s) 59
GlaI GCGC 2 cut(s) 24, 253
GluI GCNGC 1 cut(s) 197
GsuI CTGGAG 3 cut(s) 51, 251, 438
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 2 cut(s) 380, 638
HapII CCGG 1 cut(s) 572
HhaI GCGC 2 cut(s) 25, 254
Hin1II CATG 2 cut(s) 113, 600
Hin6I GCGC 2 cut(s) 23, 252
HinP1I GCGC 2 cut(s) 23, 252
HinfI GANTC 3 cut(s) 438, 547, 605
HpaII CCGG 1 cut(s) 572
HphI GGTGA 3 cut(s) 542, 556, 622
Hpy166II GTNNAC 5 cut(s) 6, 76, 156, 260, 560
Hpy188I TCNGA 1 cut(s) 313
Hpy188III TCNNGA 3 cut(s) 230, 435, 643
Hpy8I GTNNAC 5 cut(s) 6, 76, 156, 260, 560
Hpy99I CGWCG 1 cut(s) 91
HpyAV CCTTC 2 cut(s) 5, 416
HpyCH4III ACNGT 1 cut(s) 583
HpyCH4IV ACGT 3 cut(s) 448, 497, 562
HpyCH4V TGCA 4 cut(s) 109, 213, 600, 677
HpyF10VI GCNNNNNNNGC 2 cut(s) 232, 458
HpyF3I CTNAG 3 cut(s) 386, 504, 686
HpySE526I ACGT 3 cut(s) 448, 497, 562
Hsp92II CATG 2 cut(s) 113, 600
HspAI GCGC 2 cut(s) 23, 252
Kzo9I GATC 1 cut(s) 532
LmnI GCTCC 5 cut(s) 32, 183, 232, 457, 466
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 2 cut(s) 235, 380
MaeI CTAG 1 cut(s) 59
MaeII ACGT 3 cut(s) 448, 497, 562
MaeIII GTNAC 1 cut(s) 475
MalI GATC 1 cut(s) 534
MboI GATC 1 cut(s) 532
MboII GAAGA 1 cut(s) 483
MfeI CAATTG 1 cut(s) 510
MhlI GDGCHC 2 cut(s) 237, 454
MlsI TGGCCA 1 cut(s) 638
MluCI AATT 4 cut(s) 102, 182, 360, 510
MluNI TGGCCA 1 cut(s) 638
MlyI GAGTC 1 cut(s) 614
MnlI CCTC 8 cut(s) 40, 46, 65, 163, 312, 404, 675, 681
Mox20I TGGCCA 1 cut(s) 638
MscI TGGCCA 1 cut(s) 638
MseI TTAA 2 cut(s) 297, 375
MslI CAYNNNNRTG 1 cut(s) 665
Msp20I TGGCCA 1 cut(s) 638
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 1 cut(s) 572
MunI CAATTG 1 cut(s) 510
MwoI GCNNNNNNNGC 2 cut(s) 232, 458
NdeII GATC 1 cut(s) 532
NlaIII CATG 2 cut(s) 113, 600
NlaIV GGNNCC 1 cut(s) 34
NspI RCATGY 1 cut(s) 113
NspV TTCGAA 1 cut(s) 119
PaeI GCATGC 1 cut(s) 113
PaeR7I CTCGAG 1 cut(s) 303
PfeI GAWTC 2 cut(s) 438, 547
PkrI GCNGC 1 cut(s) 198
PleI GAGTC 1 cut(s) 613
PpsI GAGTC 1 cut(s) 613
PspN4I GGNNCC 1 cut(s) 34
PspPI GGNCC 1 cut(s) 379
PspXI VCTCGAGB 1 cut(s) 303
PstNI CAGNNNCTG 1 cut(s) 634
PvuII CAGCTG 1 cut(s) 199
RsaI GTAC 4 cut(s) 99, 191, 325, 592
RsaNI GTAC 4 cut(s) 98, 190, 324, 591
RseI CAYNNNNRTG 1 cut(s) 665
SaqAI TTAA 2 cut(s) 297, 375
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 1 cut(s) 532
Sau96I GGNCC 1 cut(s) 379
SchI GAGTC 1 cut(s) 614
SduI GDGCHC 2 cut(s) 237, 454
SfaNI GCATC 2 cut(s) 235, 380
SfcI CTRYAG 1 cut(s) 264
Sfr274I CTCGAG 1 cut(s) 303
SfuI TTCGAA 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 303
SmiMI CAYNNNNRTG 1 cut(s) 665
SmlI CTYRAG 2 cut(s) 303, 337
SmoI CTYRAG 2 cut(s) 303, 337
SphI GCATGC 1 cut(s) 113
Sse9I AATT 4 cut(s) 102, 182, 360, 510
SsiI CCGC 1 cut(s) 17
SspMI CTAG 1 cut(s) 59
TaaI ACNGT 1 cut(s) 583
TaiI ACGT 3 cut(s) 451, 500, 565
TaqI TCGA 2 cut(s) 119, 304
TasI AATT 4 cut(s) 102, 182, 360, 510
TfiI GAWTC 2 cut(s) 438, 547
Tru1I TTAA 2 cut(s) 297, 375
Tru9I TTAA 2 cut(s) 297, 375
TscAI CASTG 2 cut(s) 471, 543
TseI GCWGC 1 cut(s) 196
TspRI CASTG 2 cut(s) 471, 543
XapI RAATTY 1 cut(s) 102
XceI RCATGY 1 cut(s) 113
XhoI CTCGAG 1 cut(s) 303
XmiI GTMKAC 1 cut(s) 259
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.