Rw5G001570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000109
Physical Location & Seq
Reverse (-)
1336815 .. 1338075
1261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G001570.1

Sequence Viewer

Length: 747 bp
ATGGTTGTGGAGGTTTCTGTTAGACATGCAGCTGCGCTGGCTATCACTGACAATGGTTGGGTTTCGTTTGGGGCCTTCGGAGACGTGGCTGTCTTAGGCCACTCCTACATTGTGGGACGTCTACTTGCGGGAAAGAAAAAACTTGACTTCAAAGCTCTTATGGGGACTATGGCTCCGGTCTGGGAACTGAAAAATCAGTCCTCGATGAGGGCGCAAGAGGATAGGGTTCCTTTAATCCTGATGACAAATAAGGCTACAGCAATGTTGGGTGTGACGCTAGGTCATGTTCTACAGTTGGACAAGGTGGTCGACAACTTTAGGCAAGGGCTGCAACAAGCAAGTTCTTCATCTGGTTTGGGTAACCTTGACCCTAACTCTGATATAGGCGCTAGGAGGGCTCCAATTCAAGGCATCTCTGTTGCAGATTTGGCTCCTCAACTCAATAGGTTCCGCGCTCCGGCCTTTGTAATTCTCAAACCAGCCCAAGAGCGTCTTGATGTTATCATGTTGTATCCTTTGTTTGGCGTGAAGCACCATGCTTCTACCGGGATGGTGATGTACAACAAGATAACAAAATATGAGGCTTCATCCTCTGTCTTGACTCCTTTAGAGCTGGAATTCCAGCCTCAGTTGGAGCTTCCTCATCAATATGCTGTTGCCTTGGGCTCTAAGAAAGCCAAGAAGAGAAAGTTTATTACTGCTAAGCGAAAGTTGGAAATTGTTGAGGTGCCAGATGATGGCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

27.09

Weight (kDa)

9.64

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 89, 305
AatII GACGTC 1 cut(s) 121
AccB1I GGYRCC 2 cut(s) 727, 740
AccB7I CCANNNNNTGG 1 cut(s) 737
AccI GTMKAC 2 cut(s) 121, 309
AccII CGCG 1 cut(s) 453
AciI CCGC 2 cut(s) 128, 451
AcsI RAATTY 1 cut(s) 617
AcyI GRCGYC 1 cut(s) 118
AfaI GTAC 1 cut(s) 560
AfiI CCNNNNNNNGG 5 cut(s) 207, 407, 457, 521, 737
AgsI TTSAA 2 cut(s) 151, 407
AhdI GACNNNNNGTC 1 cut(s) 279
AjiI CACGTC 1 cut(s) 85
AluBI AGCT 4 cut(s) 32, 155, 613, 637
AluI AGCT 4 cut(s) 32, 155, 613, 637
Alw26I GTCTC 1 cut(s) 75
AoxI GGCC 3 cut(s) 72, 97, 459
ApeKI GCWGC 3 cut(s) 29, 32, 328
ApoI RAATTY 1 cut(s) 617
AspLEI GCGC 4 cut(s) 37, 214, 389, 455
AspS9I GGNCC 1 cut(s) 72
AsuC2I CCSGG 1 cut(s) 547
AsuHPI GGTGA 1 cut(s) 565
BanI GGYRCC 2 cut(s) 727, 740
BanII GRGCYC 2 cut(s) 400, 668
BbvI GCAGC 3 cut(s) 19, 41, 315
BccI CCATC 2 cut(s) 544, 731
BciVI GTATCC 1 cut(s) 522
BcnI CCSGG 1 cut(s) 547
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 2 cut(s) 278, 390
BfmI CTRYAG 2 cut(s) 255, 290
BfoI RGCGCY 1 cut(s) 390
BfuI GTATCC 1 cut(s) 522
BisI GCNGC 3 cut(s) 30, 33, 329
BlpI GCTNAGC 1 cut(s) 702
BlsI GCNGC 3 cut(s) 31, 34, 330
Bme1390I CCNGG 1 cut(s) 547
BmeRI GACNNNNNGTC 1 cut(s) 279
BmgBI CACGTC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 8 cut(s) 73, 174, 228, 399, 432, 449, 729, 742
BmrFI CCNGG 1 cut(s) 547
BmsI GCATC 1 cut(s) 420
Bpu1102I GCTNAGC 1 cut(s) 702
BpuMI CCSGG 1 cut(s) 547
BsaHI GRCGYC 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 660
BsaWI WCCGGW 1 cut(s) 175
BsaXI ACNNNNNCTCC 2 cut(s) 157, 187
Bsc4I CCNNNNNNNGG 5 cut(s) 207, 407, 457, 521, 737
Bse3DI GCAATG 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 660
BseGI GGATG 2 cut(s) 555, 587
BseLI CCNNNNNNNGG 5 cut(s) 207, 407, 457, 521, 737
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 641
BseRI GAGGAG 1 cut(s) 423
BseXI GCAGC 3 cut(s) 19, 41, 315
Bsh1236I CGCG 1 cut(s) 453
BshFI GGCC 3 cut(s) 74, 99, 461
BshNI GGYRCC 2 cut(s) 727, 740
BsiSI CCGG 3 cut(s) 176, 458, 546
BslFI GGGAC 2 cut(s) 129, 178
BslI CCNNNNNNNGG 5 cut(s) 207, 407, 457, 521, 737
BsmAI GTCTC 1 cut(s) 75
BsmBI CGTCTC 1 cut(s) 75
BsmFI GGGAC 2 cut(s) 129, 178
BsnI GGCC 3 cut(s) 74, 99, 461
Bsp1286I GDGCHC 2 cut(s) 400, 668
Bsp1407I TGTACA 1 cut(s) 558
Bsp1720I GCTNAGC 1 cut(s) 702
BspACI CCGC 2 cut(s) 128, 451
BspANI GGCC 3 cut(s) 74, 99, 461
BspCNI CTCAG 1 cut(s) 640
BspFNI CGCG 1 cut(s) 453
BspLI GGNNCC 8 cut(s) 73, 174, 228, 399, 432, 449, 729, 742
BspT107I GGYRCC 2 cut(s) 727, 740
BsrDI GCAATG 1 cut(s) 267
BsrGI TGTACA 1 cut(s) 558
BssECI CCNNGG 1 cut(s) 660
BssNI GRCGYC 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 660
Bst4CI ACNGT 1 cut(s) 294
Bst6I CTCTTC 1 cut(s) 677
BstACI GRCGYC 1 cut(s) 118
BstAPI GCANNNNNTGC 1 cut(s) 328
BstAUI TGTACA 1 cut(s) 558
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 4 cut(s) 94, 627, 669, 702
BstEII GGTNACC 1 cut(s) 359
BstENI CCTNNNNNAGG 1 cut(s) 205
BstF5I GGATG 2 cut(s) 555, 587
BstFNI CGCG 1 cut(s) 453
BstH2I RGCGCY 1 cut(s) 390
BstHHI GCGC 4 cut(s) 37, 214, 389, 455
BstMAI GTCTC 1 cut(s) 75
BstMWI GCNNNNNNNGC 4 cut(s) 38, 328, 395, 428
BstNSI RCATGY 1 cut(s) 29
BstPI GGTNACC 1 cut(s) 359
BstSCI CCNGG 1 cut(s) 545
BstSFI CTRYAG 2 cut(s) 255, 290
BstUI CGCG 1 cut(s) 453
BstV1I GCAGC 3 cut(s) 19, 41, 315
BsuI GTATCC 1 cut(s) 522
BsuRI GGCC 3 cut(s) 74, 99, 461
BtrI CACGTC 1 cut(s) 85
BtsCI GGATG 2 cut(s) 555, 587
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 1 cut(s) 39
CfoI GCGC 4 cut(s) 37, 214, 389, 455
Cfr13I GGNCC 1 cut(s) 72
CseI GACGC 2 cut(s) 283, 479
Csp6I GTAC 1 cut(s) 559
CviAII CATG 4 cut(s) 26, 284, 505, 536
CviQI GTAC 1 cut(s) 559
DdeI CTNAG 4 cut(s) 94, 627, 669, 702
DrdI GACNNNNNNGTC 2 cut(s) 89, 305
DriI GACNNNNNGTC 1 cut(s) 279
DseDI GACNNNNNNGTC 2 cut(s) 89, 305
Eam1104I CTCTTC 1 cut(s) 677
Eam1105I GACNNNNNGTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 677
Eco130I CCWWGG 1 cut(s) 660
Eco24I GRGCYC 2 cut(s) 400, 668
Eco91I GGTNACC 1 cut(s) 359
EcoNI CCTNNNNNAGG 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 72
EcoO65I GGTNACC 1 cut(s) 359
EcoRI GAATTC 1 cut(s) 617
EcoT14I CCWWGG 1 cut(s) 660
EcoT38I GRGCYC 2 cut(s) 400, 668
ErhI CCWWGG 1 cut(s) 660
Esp3I CGTCTC 1 cut(s) 75
FaeI CATG 4 cut(s) 29, 287, 508, 539
FaiI YATR 9 cut(s) 27, 161, 170, 285, 383, 506, 537, 579, 651
FalI AAGNNNNNCTT 2 cut(s) 477, 509
FaqI GGGAC 2 cut(s) 129, 178
FatI CATG 4 cut(s) 25, 283, 504, 535
FauI CCCGC 1 cut(s) 121
FblI GTMKAC 2 cut(s) 121, 309
Fnu4HI GCNGC 3 cut(s) 30, 33, 329
FokI GGATG 2 cut(s) 562, 574
FriOI GRGCYC 2 cut(s) 400, 668
Fsp4HI GCNGC 3 cut(s) 30, 33, 329
FspBI CTAG 2 cut(s) 278, 390
GlaI GCGC 4 cut(s) 36, 213, 388, 454
GluI GCNGC 3 cut(s) 30, 33, 329
HaeII RGCGCY 1 cut(s) 390
HaeIII GGCC 3 cut(s) 74, 99, 461
HapII CCGG 3 cut(s) 176, 458, 546
HgaI GACGC 2 cut(s) 283, 479
HhaI GCGC 4 cut(s) 37, 214, 389, 455
Hin1I GRCGYC 1 cut(s) 118
Hin1II CATG 4 cut(s) 29, 287, 508, 539
Hin6I GCGC 4 cut(s) 35, 212, 387, 453
HinP1I GCGC 4 cut(s) 35, 212, 387, 453
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 1 cut(s) 601
HpaII CCGG 3 cut(s) 176, 458, 546
HphI GGTGA 1 cut(s) 565
Hpy166II GTNNAC 2 cut(s) 122, 310
Hpy188I TCNGA 2 cut(s) 80, 379
Hpy188III TCNNGA 3 cut(s) 238, 494, 598
Hpy8I GTNNAC 2 cut(s) 122, 310
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 294
HpyCH4IV ACGT 2 cut(s) 84, 118
HpyCH4V TGCA 3 cut(s) 29, 331, 422
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 328, 395, 428
HpyF3I CTNAG 4 cut(s) 94, 627, 669, 702
HpySE526I ACGT 2 cut(s) 84, 118
Hsp92I GRCGYC 1 cut(s) 118
Hsp92II CATG 4 cut(s) 29, 287, 508, 539
HspAI GCGC 4 cut(s) 35, 212, 387, 453
LmnI GCTCC 5 cut(s) 178, 403, 436, 460, 634
Lsp1109I GCAGC 3 cut(s) 19, 41, 315
LweI GCATC 1 cut(s) 420
MaeI CTAG 2 cut(s) 278, 390
MaeII ACGT 2 cut(s) 84, 118
MaeIII GTNAC 2 cut(s) 271, 359
MboII GAAGA 2 cut(s) 336, 694
MhlI GDGCHC 2 cut(s) 400, 668
MluCI AATT 4 cut(s) 402, 468, 617, 717
MlyI GAGTC 1 cut(s) 595
MmeI TCCRAC 3 cut(s) 276, 612, 693
MseI TTAA 1 cut(s) 233
MslI CAYNNNNRTG 1 cut(s) 648
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 3 cut(s) 176, 458, 546
MspR9I CCNGG 1 cut(s) 547
MvnI CGCG 1 cut(s) 453
MwoI GCNNNNNNNGC 4 cut(s) 38, 328, 395, 428
NciI CCSGG 1 cut(s) 547
NlaIII CATG 4 cut(s) 29, 287, 508, 539
NlaIV GGNNCC 8 cut(s) 73, 174, 228, 399, 432, 449, 729, 742
NmuCI GTSAC 1 cut(s) 271
NspI RCATGY 1 cut(s) 29
PflMI CCANNNNNTGG 1 cut(s) 737
PkrI GCNGC 3 cut(s) 31, 34, 330
PleI GAGTC 1 cut(s) 595
PpsI GAGTC 1 cut(s) 595
PspEI GGTNACC 1 cut(s) 359
PspN4I GGNNCC 8 cut(s) 73, 174, 228, 399, 432, 449, 729, 742
PspPI GGNCC 1 cut(s) 72
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 1 cut(s) 560
RsaNI GTAC 1 cut(s) 559
RseI CAYNNNNRTG 1 cut(s) 648
SalI GTCGAC 1 cut(s) 308
SaqAI TTAA 1 cut(s) 233
SatI GCNGC 3 cut(s) 30, 33, 329
Sau96I GGNCC 1 cut(s) 72
SchI GAGTC 1 cut(s) 595
ScrFI CCNGG 1 cut(s) 547
SduI GDGCHC 2 cut(s) 400, 668
SfaNI GCATC 1 cut(s) 420
SfcI CTRYAG 2 cut(s) 255, 290
SmiMI CAYNNNNRTG 1 cut(s) 648
Sse9I AATT 4 cut(s) 402, 468, 617, 717
SsiI CCGC 2 cut(s) 128, 451
SspMI CTAG 2 cut(s) 278, 390
StyD4I CCNGG 1 cut(s) 545
StyI CCWWGG 1 cut(s) 660
TaaI ACNGT 1 cut(s) 294
TaiI ACGT 2 cut(s) 87, 121
TaqI TCGA 2 cut(s) 203, 309
TasI AATT 4 cut(s) 402, 468, 617, 717
TatI WGTACW 1 cut(s) 558
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 3 cut(s) 29, 32, 328
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 2 cut(s) 336, 576
TspRI CASTG 1 cut(s) 52
Van91I CCANNNNNTGG 1 cut(s) 737
XagI CCTNNNNNAGG 1 cut(s) 205
XapI RAATTY 1 cut(s) 617
XceI RCATGY 1 cut(s) 29
XmiI GTMKAC 2 cut(s) 121, 309
XspI CTAG 2 cut(s) 278, 390
ZraI GACGTC 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.