RLG00000019205

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000109
Physical Location & Seq
Reverse (-)
48335701 .. 48337545
1845 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019205

Sequence Viewer

Length: 546 bp
ATGGAGGCTACTGCTGTTGTCAAGGAGGTACCTCCGAGCCGGTGTAGGAGGTTGGATACTAACTCGACCTCCAGATGGAGTCCGCCTGATCGACAATGGTTGAAGTTGAGCGTCGATGCACCATGCGACCCCAAAAAACGTAAAGCAGGGATAGGAGCAGTGGTGCGGAATTCTGAAGCGGCTGAATTTGATGGGTTTGGAGAGGCTTCATCGATCCAGATCAAGTTCATCTTGGTCTGGGCTGAGATCATAGGGCTGAAGCTCTTTGTTGAAGGTGCAGTGACGTTGATCAGTGTAACATTGGGAGAAGTGATGGCGATAGATAATTCGACGGTGCGCTGTGGGAAGGCAGCACGGGTTCGAATCCGTCATGCAATCTCGGCCCCAGTTTGGCAGGTTTTCCCTCCCATGTCTTACGAGTTTGCAGTGGGAGTTGGGGCCACTGTTCACTTCAAGTATCAGCGATTGGTTGGGTTTTGCAGAACCTATGGTTTTTGGATCATCTTGCCTTGGCTTGCTCGGGGTCTCATCAGGTCGAAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

182

Amino Acids

20.14

Weight (kDa)

9.85

Isoelectric Point (pI)

35.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 385
Acc65I GGTACC 1 cut(s) 28
AccB1I GGYRCC 1 cut(s) 28
AciI CCGC 3 cut(s) 83, 166, 179
AclWI GGATC 2 cut(s) 208, 506
AcsI RAATTY 2 cut(s) 169, 185
AcuI CTGAAG 2 cut(s) 195, 278
AfaI GTAC 1 cut(s) 30
AfiI CCNNNNNNNGG 2 cut(s) 75, 390
AgsI TTSAA 3 cut(s) 103, 272, 454
AluBI AGCT 1 cut(s) 262
AluI AGCT 1 cut(s) 262
Alw26I GTCTC 1 cut(s) 530
AlwI GGATC 2 cut(s) 208, 506
Ama87I CYCGRG 1 cut(s) 519
AoxI GGCC 2 cut(s) 381, 438
ApeKI GCWGC 1 cut(s) 350
ApoI RAATTY 2 cut(s) 169, 185
Asp718I GGTACC 1 cut(s) 28
AspLEI GCGC 1 cut(s) 339
AspS9I GGNCC 2 cut(s) 382, 438
AsuII TTCGAA 1 cut(s) 361
AvaI CYCGRG 1 cut(s) 519
BanI GGYRCC 1 cut(s) 28
BbvI GCAGC 1 cut(s) 362
BccI CCATC 3 cut(s) 69, 185, 307
BciVI GTATCC 1 cut(s) 49
BclI TGATCA 1 cut(s) 288
BcoDI GTCTC 1 cut(s) 530
BfuAI ACCTGC 1 cut(s) 385
BfuI GTATCC 1 cut(s) 49
BisI GCNGC 2 cut(s) 180, 351
BlsI GCNGC 2 cut(s) 181, 352
BmeT110I CYCGRG 1 cut(s) 519
BmgT120I GGNCC 2 cut(s) 382, 438
BmiI GGNNCC 3 cut(s) 30, 384, 439
BmrI ACTGGG 1 cut(s) 380
BmsI GCATC 1 cut(s) 106
BmuI ACTGGG 1 cut(s) 380
BpmI CTGGAG 1 cut(s) 55
Bpu14I TTCGAA 1 cut(s) 361
Bsa29I ATCGAT 1 cut(s) 212
BsaBI GATNNNNATC 1 cut(s) 218
BsaI GGTCTC 1 cut(s) 530
BsaJI CCNNGG 1 cut(s) 509
BsaXI ACNNNNNCTCC 4 cut(s) 53, 83, 147, 177
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 390
Bse118I RCCGGY 1 cut(s) 39
Bse1I ACTGG 1 cut(s) 386
Bse8I GATNNNNATC 1 cut(s) 218
BseCI ATCGAT 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 509
BseJI GATNNNNATC 1 cut(s) 218
BseLI CCNNNNNNNGG 2 cut(s) 75, 390
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 386
BseXI GCAGC 1 cut(s) 362
BsgI GTGCAG 1 cut(s) 297
BshFI GGCC 2 cut(s) 383, 440
BshNI GGYRCC 1 cut(s) 28
BshVI ATCGAT 1 cut(s) 212
BsiHKCI CYCGRG 1 cut(s) 519
BsiSI CCGG 1 cut(s) 40
BslI CCNNNNNNNGG 2 cut(s) 75, 390
BsmAI GTCTC 1 cut(s) 530
BsnI GGCC 2 cut(s) 383, 440
Bso31I GGTCTC 1 cut(s) 530
BsoBI CYCGRG 1 cut(s) 519
Bsp119I TTCGAA 1 cut(s) 361
Bsp143I GATC 6 cut(s) 88, 213, 219, 246, 288, 498
BspACI CCGC 3 cut(s) 83, 166, 179
BspANI GGCC 2 cut(s) 383, 440
BspCNI CTCAG 1 cut(s) 235
BspDI ATCGAT 1 cut(s) 212
BspLI GGNNCC 3 cut(s) 30, 384, 439
BspMI ACCTGC 1 cut(s) 385
BspPI GGATC 2 cut(s) 208, 506
BspT104I TTCGAA 1 cut(s) 361
BspT107I GGYRCC 1 cut(s) 28
BspTNI GGTCTC 1 cut(s) 530
BsrFI RCCGGY 1 cut(s) 39
BsrI ACTGG 1 cut(s) 386
BssAI RCCGGY 1 cut(s) 39
BssECI CCNNGG 1 cut(s) 509
BssMI GATC 6 cut(s) 88, 213, 219, 246, 288, 498
BssT1I CCWWGG 1 cut(s) 509
Bst4CI ACNGT 2 cut(s) 334, 445
BstBI TTCGAA 1 cut(s) 361
BstC8I GCNNGC 1 cut(s) 516
BstDEI CTNAG 1 cut(s) 243
BstHHI GCGC 1 cut(s) 339
BstKTI GATC 6 cut(s) 91, 216, 222, 249, 291, 501
BstMAI GTCTC 1 cut(s) 530
BstMBI GATC 6 cut(s) 88, 213, 219, 246, 288, 498
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstV1I GCAGC 1 cut(s) 362
Bsu15I ATCGAT 1 cut(s) 212
BsuI GTATCC 1 cut(s) 49
BsuRI GGCC 2 cut(s) 383, 440
BsuTUI ATCGAT 1 cut(s) 212
BtsI GCAGTG 3 cut(s) 165, 285, 432
BtsIMutI CAGTG 5 cut(s) 165, 285, 298, 432, 441
BveI ACCTGC 1 cut(s) 385
Cac8I GCNNGC 1 cut(s) 516
CfoI GCGC 1 cut(s) 339
Cfr10I RCCGGY 1 cut(s) 39
Cfr13I GGNCC 2 cut(s) 382, 438
ClaI ATCGAT 1 cut(s) 212
CseI GACGC 1 cut(s) 100
Csp6I GTAC 1 cut(s) 29
CviAII CATG 3 cut(s) 123, 371, 409
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 1 cut(s) 243
DpnI GATC 6 cut(s) 90, 215, 221, 248, 290, 500
DpnII GATC 6 cut(s) 88, 213, 219, 246, 288, 498
EciI GGCGGA 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 509
Eco31I GGTCTC 1 cut(s) 530
Eco57I CTGAAG 2 cut(s) 195, 278
Eco88I CYCGRG 1 cut(s) 519
EcoRI GAATTC 1 cut(s) 169
EcoT14I CCWWGG 1 cut(s) 509
ErhI CCWWGG 1 cut(s) 509
FaeI CATG 3 cut(s) 126, 374, 412
FaiI YATR 5 cut(s) 124, 251, 372, 410, 489
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FatI CATG 3 cut(s) 122, 370, 408
FbaI TGATCA 1 cut(s) 288
Fnu4HI GCNGC 2 cut(s) 180, 351
Fsp4HI GCNGC 2 cut(s) 180, 351
GlaI GCGC 1 cut(s) 338
GluI GCNGC 2 cut(s) 180, 351
GsuI CTGGAG 1 cut(s) 55
HaeIII GGCC 2 cut(s) 383, 440
HapII CCGG 1 cut(s) 40
HgaI GACGC 1 cut(s) 100
HhaI GCGC 1 cut(s) 339
Hin1II CATG 3 cut(s) 126, 374, 412
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HinfI GANTC 2 cut(s) 79, 363
HpaII CCGG 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 2 cut(s) 36, 175
Hpy188III TCNNGA 2 cut(s) 72, 217
Hpy8I GTNNAC 1 cut(s) 448
Hpy99I CGWCG 2 cut(s) 116, 334
HpyAV CCTTC 2 cut(s) 266, 340
HpyCH4III ACNGT 2 cut(s) 334, 445
HpyCH4IV ACGT 2 cut(s) 139, 284
HpyCH4V TGCA 5 cut(s) 119, 278, 374, 425, 480
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 2 cut(s) 139, 284
Hsp92II CATG 3 cut(s) 126, 374, 412
HspAI GCGC 1 cut(s) 337
KpnI GGTACC 1 cut(s) 32
Ksp22I TGATCA 1 cut(s) 288
Kzo9I GATC 6 cut(s) 88, 213, 219, 246, 288, 498
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 9 cut(s) 53, 85, 99, 132, 223, 230, 380, 399, 517
Lsp1109I GCAGC 1 cut(s) 362
LweI GCATC 1 cut(s) 106
MaeII ACGT 2 cut(s) 139, 284
MaeIII GTNAC 2 cut(s) 280, 295
MalI GATC 6 cut(s) 90, 215, 221, 248, 290, 500
MboI GATC 6 cut(s) 88, 213, 219, 246, 288, 498
MluCI AATT 3 cut(s) 169, 185, 325
MlyI GAGTC 1 cut(s) 88
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 6 cut(s) 19, 42, 42, 79, 196, 414
MspI CCGG 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 380
NdeII GATC 6 cut(s) 88, 213, 219, 246, 288, 498
NlaIII CATG 3 cut(s) 126, 374, 412
NlaIV GGNNCC 3 cut(s) 30, 384, 439
NmeAIII GCCGAG 1 cut(s) 359
NmuCI GTSAC 1 cut(s) 280
NspV TTCGAA 1 cut(s) 361
PfeI GAWTC 1 cut(s) 363
PkrI GCNGC 2 cut(s) 181, 352
PleI GAGTC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 87
PspN4I GGNNCC 3 cut(s) 30, 384, 439
PspPI GGNCC 2 cut(s) 382, 438
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
SatI GCNGC 2 cut(s) 180, 351
Sau3AI GATC 6 cut(s) 88, 213, 219, 246, 288, 498
Sau96I GGNCC 2 cut(s) 382, 438
SchI GAGTC 1 cut(s) 88
SfaNI GCATC 1 cut(s) 106
SfuI TTCGAA 1 cut(s) 361
Sse9I AATT 3 cut(s) 169, 185, 325
SsiI CCGC 3 cut(s) 83, 166, 179
StyI CCWWGG 1 cut(s) 509
TaaI ACNGT 2 cut(s) 334, 445
TaiI ACGT 2 cut(s) 142, 287
TaqI TCGA 7 cut(s) 65, 91, 114, 212, 329, 361, 536
TasI AATT 3 cut(s) 169, 185, 325
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 1 cut(s) 363
TscAI CASTG 5 cut(s) 165, 285, 298, 432, 448
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 1 cut(s) 350
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 2 cut(s) 198, 217
TspGWI ACGGA 1 cut(s) 356
TspRI CASTG 5 cut(s) 165, 285, 298, 432, 448
XapI RAATTY 2 cut(s) 169, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.