Rmu_sc0002357.1_g000020

calcium-transporting ATPase 13, plasma

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002357.1
Physical Location & Seq
Reverse (-)
64364 .. 65681
1318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002357.1_g000020.1.cds

Sequence Viewer

Length: 819 bp
atgtcatcatgggtcgctctccggggcggatcttatccctttccttctgccatagcttgtaaatatgctcttaggagcctggttcgaaacggggttgtccctttagtgcatcgggggatgctacaaggaactgaacgccatttgggtgcctgtccctttgatccatgtttggatctcacgtccctctctcttcaactggcttttctggttgataatttggcagaagaagttatccgttttggagatggtttgagtcctgaatttcatgcctttgtatctggattgcagttgtttgggtgcttgattggaccttttctggtgtcgaatcatccaggtgcagcaagcttcactcttcctcctctccggtttaggccagattgcgagtccgacttcgttctcgacggcgtcgccgctgtgaaggatagtctttggctttatgttgggccttttgtttgctgctctgttgttgtatccctgggcttgcctggtttaagcccatttgtattttgttttcttgtttctaggcccagcgtgttggttagagcatatatgcgtaggtcaaccttcagtgccctggaagaaaaagtgggaagcaatgtctggttgattcttgatgttccgagcagtaatcttggcataagccaaagaaaatggcattctgctttcattaccatctactgctctagaacgttcctctctttacgaccttctactcttcccaaatataccaattccacattcatgtctcgcaccctctcttaccccattgttagggtcgagccagtctcggttccagccactaataatgaagggcaatga

Protein Analysis

272

Amino Acids

29.8

Weight (kDa)

8.6

Isoelectric Point (pI)

62.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 146
AciI CCGC 2 cut(s) 27, 411
AclI AACGTT 1 cut(s) 689
AclWI GGATC 3 cut(s) 37, 155, 180
AcsI RAATTY 1 cut(s) 260
AcuI CTGAAG 1 cut(s) 550
AcyI GRCGYC 1 cut(s) 405
AfiI CCNNNNNNNGG 1 cut(s) 771
AgsI TTSAA 1 cut(s) 194
AjiI CACGTC 1 cut(s) 180
AjnI CCWGG 5 cut(s) 78, 331, 474, 484, 573
AjuI GAANNNNNNNTTGG 2 cut(s) 722, 754
AluBI AGCT 2 cut(s) 56, 345
AluI AGCT 2 cut(s) 56, 345
Alw26I GTCTC 2 cut(s) 750, 790
AlwI GGATC 3 cut(s) 37, 155, 180
AoxI GGCC 3 cut(s) 371, 443, 524
ApeKI GCWGC 2 cut(s) 338, 456
ApoI RAATTY 1 cut(s) 260
AspS9I GGNCC 3 cut(s) 308, 443, 525
AsuC2I CCSGG 1 cut(s) 23
AsuII TTCGAA 1 cut(s) 85
AvaII GGWCC 1 cut(s) 308
BaeGI GKGCMC 1 cut(s) 574
BanI GGYRCC 1 cut(s) 146
BbvI GCAGC 2 cut(s) 350, 443
BccI CCATC 2 cut(s) 239, 680
BceAI ACGGC 1 cut(s) 418
BciT130I CCWGG 5 cut(s) 80, 333, 476, 486, 575
BciVI GTATCC 1 cut(s) 481
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 2 cut(s) 750, 790
BfaI CTAG 2 cut(s) 522, 684
BfuI GTATCC 1 cut(s) 481
BisI GCNGC 3 cut(s) 339, 411, 457
BlsI GCNGC 3 cut(s) 340, 412, 458
Bme1390I CCNGG 6 cut(s) 23, 80, 333, 476, 486, 575
Bme18I GGWCC 1 cut(s) 308
BmgBI CACGTC 1 cut(s) 180
BmgT120I GGNCC 3 cut(s) 308, 443, 525
BmiI GGNNCC 3 cut(s) 77, 148, 792
BmrFI CCNGG 6 cut(s) 23, 80, 333, 476, 486, 575
BmsI GCATC 2 cut(s) 108, 118
BplI GAGNNNNNCTC 2 cut(s) 770, 802
Bpu14I TTCGAA 1 cut(s) 85
BpuMI CCSGG 1 cut(s) 23
BsaHI GRCGYC 1 cut(s) 405
BsaJI CCNNGG 4 cut(s) 22, 474, 475, 573
BsaWI WCCGGW 1 cut(s) 363
BsaXI ACNNNNNCTCC 2 cut(s) 340, 370
Bsc4I CCNNNNNNNGG 1 cut(s) 771
Bse1I ACTGG 2 cut(s) 201, 782
Bse3DI GCAATG 1 cut(s) 601
BseBI CCWGG 5 cut(s) 80, 333, 476, 486, 575
BseDI CCNNGG 4 cut(s) 22, 474, 475, 573
BseGI GGATG 2 cut(s) 123, 328
BseLI CCNNNNNNNGG 1 cut(s) 771
BseMI GCAATG 1 cut(s) 601
BseNI ACTGG 2 cut(s) 201, 782
BseRI GAGGAG 1 cut(s) 348
BseSI GKGCMC 1 cut(s) 574
BseXI GCAGC 2 cut(s) 350, 443
BseYI CCCAGC 1 cut(s) 527
BsgI GTGCAG 1 cut(s) 357
BshFI GGCC 3 cut(s) 373, 445, 526
BshNI GGYRCC 1 cut(s) 146
BsiSI CCGG 2 cut(s) 22, 364
BslFI GGGAC 3 cut(s) 83, 138, 166
BslI CCNNNNNNNGG 1 cut(s) 771
BsmAI GTCTC 2 cut(s) 750, 790
BsmFI GGGAC 3 cut(s) 83, 138, 166
BsmI GAATGC 1 cut(s) 655
BsnI GGCC 3 cut(s) 373, 445, 526
Bsp119I TTCGAA 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 574
Bsp143I GATC 3 cut(s) 29, 160, 172
BspACI CCGC 2 cut(s) 27, 411
BspANI GGCC 3 cut(s) 373, 445, 526
BspLI GGNNCC 3 cut(s) 77, 148, 792
BspPI GGATC 3 cut(s) 37, 155, 180
BspT104I TTCGAA 1 cut(s) 85
BspT107I GGYRCC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 601
BsrI ACTGG 2 cut(s) 201, 782
BssECI CCNNGG 4 cut(s) 22, 474, 475, 573
BssMI GATC 3 cut(s) 29, 160, 172
BssNI GRCGYC 1 cut(s) 405
Bst2UI CCWGG 5 cut(s) 80, 333, 476, 486, 575
Bst6I CTCTTC 3 cut(s) 195, 357, 720
BstACI GRCGYC 1 cut(s) 405
BstBI TTCGAA 1 cut(s) 85
BstC8I GCNNGC 2 cut(s) 343, 482
BstDEI CTNAG 1 cut(s) 71
BstF5I GGATG 2 cut(s) 123, 328
BstKTI GATC 3 cut(s) 32, 163, 175
BstMAI GTCTC 2 cut(s) 750, 790
BstMBI GATC 3 cut(s) 29, 160, 172
BstNI CCWGG 5 cut(s) 80, 333, 476, 486, 575
BstSCI CCNGG 6 cut(s) 21, 78, 331, 474, 484, 573
BstSLI GKGCMC 1 cut(s) 574
BstV1I GCAGC 2 cut(s) 350, 443
BstX2I RGATCY 2 cut(s) 29, 172
BstXI CCANNNNNNTGG 1 cut(s) 535
BstYI RGATCY 2 cut(s) 29, 172
BsuI GTATCC 1 cut(s) 481
BsuRI GGCC 3 cut(s) 373, 445, 526
BtrI CACGTC 1 cut(s) 180
BtsCI GGATG 2 cut(s) 123, 328
BtsIMutI CAGTG 1 cut(s) 574
Cac8I GCNNGC 2 cut(s) 343, 482
Cfr13I GGNCC 3 cut(s) 308, 443, 525
CseI GACGC 1 cut(s) 394
CviAII CATG 4 cut(s) 9, 165, 266, 742
DdeI CTNAG 1 cut(s) 71
DpnI GATC 3 cut(s) 31, 162, 174
DpnII GATC 3 cut(s) 29, 160, 172
Eam1104I CTCTTC 3 cut(s) 195, 357, 720
EarI CTCTTC 3 cut(s) 195, 357, 720
EciI GGCGGA 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 308
Eco57I CTGAAG 1 cut(s) 550
EcoRII CCWGG 5 cut(s) 78, 331, 474, 484, 573
FaeI CATG 4 cut(s) 12, 168, 269, 745
FaqI GGGAC 3 cut(s) 83, 138, 166
FatI CATG 4 cut(s) 8, 164, 265, 741
Fnu4HI GCNGC 3 cut(s) 339, 411, 457
FokI GGATG 2 cut(s) 130, 315
Fsp4HI GCNGC 3 cut(s) 339, 411, 457
FspBI CTAG 2 cut(s) 522, 684
GluI GCNGC 3 cut(s) 339, 411, 457
GsaI CCCAGC 1 cut(s) 531
HaeIII GGCC 3 cut(s) 373, 445, 526
HapII CCGG 2 cut(s) 22, 364
HgaI GACGC 1 cut(s) 394
Hin1I GRCGYC 1 cut(s) 405
Hin1II CATG 4 cut(s) 12, 168, 269, 745
HincII GTYRAC 1 cut(s) 561
HindII GTYRAC 1 cut(s) 561
HindIII AAGCTT 1 cut(s) 343
HinfI GANTC 4 cut(s) 253, 325, 383, 607
HpaII CCGG 2 cut(s) 22, 364
Hpy166II GTNNAC 1 cut(s) 561
Hpy188I TCNGA 2 cut(s) 388, 621
Hpy188III TCNNGA 5 cut(s) 257, 279, 398, 611, 684
Hpy8I GTNNAC 1 cut(s) 561
Hpy99I CGWCG 2 cut(s) 404, 410
HpyAV CCTTC 5 cut(s) 54, 412, 574, 717, 803
HpyCH4IV ACGT 2 cut(s) 179, 689
HpyCH4V TGCA 3 cut(s) 109, 286, 338
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 2 cut(s) 179, 689
Hsp92I GRCGYC 1 cut(s) 405
Hsp92II CATG 4 cut(s) 12, 168, 269, 745
Kzo9I GATC 3 cut(s) 29, 160, 172
LmnI GCTCC 1 cut(s) 75
Lsp1109I GCAGC 2 cut(s) 350, 443
LweI GCATC 2 cut(s) 108, 118
MaeI CTAG 2 cut(s) 522, 684
MaeII ACGT 2 cut(s) 179, 689
MalI GATC 3 cut(s) 31, 162, 174
MboI GATC 3 cut(s) 29, 160, 172
MboII GAAGA 5 cut(s) 182, 236, 344, 590, 707
MflI RGATCY 2 cut(s) 29, 172
MhlI GDGCHC 1 cut(s) 574
MluCI AATT 3 cut(s) 214, 260, 730
MlyI GAGTC 2 cut(s) 262, 392
MmeI TCCRAC 1 cut(s) 411
MnlI CCTC 5 cut(s) 194, 366, 369, 704, 764
MseI TTAA 1 cut(s) 491
MslI CAYNNNNRTG 3 cut(s) 144, 333, 740
MspA1I CMGCKG 1 cut(s) 413
MspI CCGG 2 cut(s) 22, 364
MspR9I CCNGG 6 cut(s) 23, 80, 333, 476, 486, 575
Mva1269I GAATGC 1 cut(s) 655
MvaI CCWGG 5 cut(s) 80, 333, 476, 486, 575
NciI CCSGG 1 cut(s) 23
NdeII GATC 3 cut(s) 29, 160, 172
NlaIII CATG 4 cut(s) 12, 168, 269, 745
NlaIV GGNNCC 3 cut(s) 77, 148, 792
NspV TTCGAA 1 cut(s) 85
PasI CCCWGGG 1 cut(s) 475
PctI GAATGC 1 cut(s) 655
PfeI GAWTC 2 cut(s) 325, 607
PflFI GACNNNGTC 1 cut(s) 404
PkrI GCNGC 3 cut(s) 340, 412, 458
PleI GAGTC 2 cut(s) 261, 391
PpsI GAGTC 2 cut(s) 261, 391
Psp1406I AACGTT 1 cut(s) 689
Psp6I CCWGG 5 cut(s) 78, 331, 474, 484, 573
PspFI CCCAGC 1 cut(s) 527
PspGI CCWGG 5 cut(s) 78, 331, 474, 484, 573
PspN4I GGNNCC 3 cut(s) 77, 148, 792
PspPI GGNCC 3 cut(s) 308, 443, 525
PsuI RGATCY 2 cut(s) 29, 172
PsyI GACNNNGTC 1 cut(s) 404
RseI CAYNNNNRTG 3 cut(s) 144, 333, 740
SaqAI TTAA 1 cut(s) 491
SatI GCNGC 3 cut(s) 339, 411, 457
Sau3AI GATC 3 cut(s) 29, 160, 172
Sau96I GGNCC 3 cut(s) 308, 443, 525
SchI GAGTC 2 cut(s) 262, 392
ScrFI CCNGG 6 cut(s) 23, 80, 333, 476, 486, 575
SduI GDGCHC 1 cut(s) 574
SetI ASST 9 cut(s) 58, 182, 313, 337, 347, 560, 566, 692, 709
SfaNI GCATC 2 cut(s) 108, 118
SfuI TTCGAA 1 cut(s) 85
SinI GGWCC 1 cut(s) 308
SmiMI CAYNNNNRTG 3 cut(s) 144, 333, 740
Sse9I AATT 3 cut(s) 214, 260, 730
SsiI CCGC 2 cut(s) 27, 411
SspMI CTAG 2 cut(s) 522, 684
StyD4I CCNGG 6 cut(s) 21, 78, 331, 474, 484, 573
TaiI ACGT 2 cut(s) 182, 692
TaqI TCGA 4 cut(s) 85, 323, 399, 777
TasI AATT 3 cut(s) 214, 260, 730
TauI GCSGC 1 cut(s) 413
TfiI GAWTC 2 cut(s) 325, 607
Tru1I TTAA 1 cut(s) 491
Tru9I TTAA 1 cut(s) 491
TscAI CASTG 1 cut(s) 574
TseI GCWGC 2 cut(s) 338, 456
TspDTI ATGAA 3 cut(s) 254, 655, 730
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 1 cut(s) 574
Tth111I GACNNNGTC 1 cut(s) 404
VpaK11BI GGWCC 1 cut(s) 308
XapI RAATTY 1 cut(s) 260
XbaI TCTAGA 1 cut(s) 683
XspI CTAG 2 cut(s) 522, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.