RLG00000033757

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000109
Physical Location & Seq
Reverse (-)
31800813 .. 31802185
1373 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033757

Sequence Viewer

Length: 669 bp
ATGGTTGATCAAGTAACAGCTCTACTCGCGGCGGCACTGACTATATCTAAGGATGGTCAGATGTCGTTTGGAGGAGTCGGTGCGGCTGTTGTGTCGTCCCATCACTTTGCAGTGGGAAAACTTCTCTCTGCGACGGCTAGGCGTCGTGTTGATCCCAAAGCCTTCATGGGAACGATGACTTCTCTATGGGGGCTGGGCAATCGGCTTGCTGTTCGTTCGATCAAGGACAGGTTTGTTTTTCAGTTCTTGGCACTGGAAGATTGTTTGAGGATCGTGGAGAATAGTCCGTGCCCAGTTGGCCAAATTCTAGACTCAGGCGGCTGTAGGGCTGGCATCTTCTTCTATTGCTCCTGTGTAGATGGAGGTCAACACTGCTCCTATTATGGGCAAGAAACGTGCTGCTCCTATAGAGCCAAGGTTAGCCGCCCTCCTGGTCGGAAGAACAATCCCAAGACTAAAGGCTTGAAGCCAAGGAAGCTAAAGACAAAGGCATCTAAGCCTCATAGAAAGAGGACGTTCAAACATGCAGAGGCTTCTTCTCCAAGTAAAGTGGATACTCTGGGCCCTGGATCATCGTTTGCAGCATCTCCTCCAATTGTTTTGGAGAACATGTCCTCCAACAAGGTTTCTGGGCTGGAGGAAGGCACTCTCATGGGTGTCCTAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

23.77

Weight (kDa)

9.79

Isoelectric Point (pI)

35.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 29
AciI CCGC 5 cut(s) 29, 32, 83, 318, 424
AclWI GGATC 3 cut(s) 146, 278, 577
AcoI YGGCCR 1 cut(s) 298
AcsI RAATTY 1 cut(s) 303
AcyI GRCGYC 1 cut(s) 142
AfiI CCNNNNNNNGG 1 cut(s) 384
AflIII ACRYGT 1 cut(s) 609
AgsI TTSAA 2 cut(s) 466, 520
AjnI CCWGG 2 cut(s) 430, 565
AloI GAACNNNNNNTCC 2 cut(s) 599, 631
AluBI AGCT 2 cut(s) 20, 478
AluI AGCT 2 cut(s) 20, 478
AlwI GGATC 3 cut(s) 146, 278, 577
AoxI GGCC 2 cut(s) 298, 562
ApaI GGGCCC 1 cut(s) 566
ApeKI GCWGC 2 cut(s) 399, 581
ApoI RAATTY 1 cut(s) 303
AspS9I GGNCC 2 cut(s) 562, 563
BaeGI GKGCMC 2 cut(s) 293, 566
BalI TGGCCA 1 cut(s) 300
BanII GRGCYC 1 cut(s) 566
BbvI GCAGC 2 cut(s) 386, 593
BccI CCATC 3 cut(s) 47, 108, 353
BceAI ACGGC 1 cut(s) 150
BciT130I CCWGG 2 cut(s) 432, 567
BciVI GTATCC 1 cut(s) 547
BclI TGATCA 1 cut(s) 7
BfaI CTAG 3 cut(s) 138, 308, 662
BfmI CTRYAG 2 cut(s) 322, 406
BfuI GTATCC 1 cut(s) 547
BglI GCCNNNNNGGC 1 cut(s) 297
BisI GCNGC 7 cut(s) 30, 33, 84, 319, 400, 424, 582
BlsI GCNGC 7 cut(s) 31, 34, 85, 320, 401, 425, 583
Bme1390I CCNGG 2 cut(s) 432, 567
BmgT120I GGNCC 2 cut(s) 562, 563
BmiI GGNNCC 1 cut(s) 564
BmrFI CCNGG 2 cut(s) 432, 567
BmrI ACTGGG 1 cut(s) 287
BmsI GCATC 3 cut(s) 342, 500, 593
BmuI ACTGGG 1 cut(s) 287
BpmI CTGGAG 1 cut(s) 656
BsaHI GRCGYC 1 cut(s) 142
BsaJI CCNNGG 3 cut(s) 414, 470, 565
BsaXI ACNNNNNCTCC 4 cut(s) 596, 599, 626, 629
Bsc4I CCNNNNNNNGG 1 cut(s) 384
Bse1I ACTGG 2 cut(s) 258, 293
BseBI CCWGG 2 cut(s) 432, 567
BseDI CCNNGG 3 cut(s) 414, 470, 565
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 384
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 2 cut(s) 258, 293
BseRI GAGGAG 2 cut(s) 87, 579
BseSI GKGCMC 2 cut(s) 293, 566
BseXI GCAGC 2 cut(s) 386, 593
BseYI CCCAGC 1 cut(s) 193
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 2 cut(s) 300, 564
BslFI GGGAC 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 384
BsmFI GGGAC 1 cut(s) 82
BsnI GGCC 2 cut(s) 300, 564
Bsp120I GGGCCC 1 cut(s) 562
Bsp1286I GDGCHC 2 cut(s) 293, 566
Bsp143I GATC 5 cut(s) 7, 151, 219, 270, 569
BspACI CCGC 5 cut(s) 29, 32, 83, 318, 424
BspANI GGCC 2 cut(s) 300, 564
BspCNI CTCAG 1 cut(s) 326
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 564
BspPI GGATC 3 cut(s) 146, 278, 577
BsrI ACTGG 2 cut(s) 258, 293
BssECI CCNNGG 3 cut(s) 414, 470, 565
BssMI GATC 5 cut(s) 7, 151, 219, 270, 569
BssNI GRCGYC 1 cut(s) 142
BssT1I CCWWGG 2 cut(s) 414, 470
Bst2UI CCWGG 2 cut(s) 432, 567
BstACI GRCGYC 1 cut(s) 142
BstC8I GCNNGC 2 cut(s) 207, 331
BstDEI CTNAG 3 cut(s) 48, 313, 495
BstF5I GGATG 1 cut(s) 58
BstFNI CGCG 1 cut(s) 29
BstKTI GATC 5 cut(s) 10, 154, 222, 273, 572
BstMBI GATC 5 cut(s) 7, 151, 219, 270, 569
BstMWI GCNNNNNNNGC 3 cut(s) 26, 297, 475
BstNI CCWGG 2 cut(s) 432, 567
BstNSI RCATGY 2 cut(s) 527, 613
BstSCI CCNGG 2 cut(s) 430, 565
BstSFI CTRYAG 2 cut(s) 322, 406
BstSLI GKGCMC 2 cut(s) 293, 566
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 2 cut(s) 386, 593
BsuI GTATCC 1 cut(s) 547
BsuRI GGCC 2 cut(s) 300, 564
BtsCI GGATG 1 cut(s) 58
BtsI GCAGTG 2 cut(s) 117, 370
BtsIMutI CAGTG 4 cut(s) 35, 117, 251, 370
Cac8I GCNNGC 2 cut(s) 207, 331
Cfr13I GGNCC 2 cut(s) 562, 563
CseI GACGC 1 cut(s) 131
CspCI CAANNNNNGTGG 2 cut(s) 531, 566
CviAII CATG 4 cut(s) 166, 524, 610, 652
DdeI CTNAG 3 cut(s) 48, 313, 495
DpnI GATC 5 cut(s) 9, 153, 221, 272, 571
DpnII GATC 5 cut(s) 7, 151, 219, 270, 569
EaeI YGGCCR 1 cut(s) 298
Eco130I CCWWGG 2 cut(s) 414, 470
Eco24I GRGCYC 1 cut(s) 566
EcoO109I RGGNCCY 1 cut(s) 563
EcoRII CCWGG 2 cut(s) 430, 565
EcoT14I CCWWGG 2 cut(s) 414, 470
EcoT38I GRGCYC 1 cut(s) 566
ErhI CCWWGG 2 cut(s) 414, 470
FaeI CATG 4 cut(s) 169, 527, 613, 655
FaqI GGGAC 1 cut(s) 82
FatI CATG 4 cut(s) 165, 523, 609, 651
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 7 cut(s) 30, 33, 84, 319, 400, 424, 582
FokI GGATG 1 cut(s) 65
FriOI GRGCYC 1 cut(s) 566
Fsp4HI GCNGC 7 cut(s) 30, 33, 84, 319, 400, 424, 582
FspBI CTAG 3 cut(s) 138, 308, 662
GluI GCNGC 7 cut(s) 30, 33, 84, 319, 400, 424, 582
GsaI CCCAGC 1 cut(s) 197
GsuI CTGGAG 1 cut(s) 656
HaeIII GGCC 2 cut(s) 300, 564
HgaI GACGC 1 cut(s) 131
Hin1I GRCGYC 1 cut(s) 142
Hin1II CATG 4 cut(s) 169, 527, 613, 655
HincII GTYRAC 1 cut(s) 368
HindII GTYRAC 1 cut(s) 368
HinfI GANTC 2 cut(s) 75, 311
Hpy166II GTNNAC 1 cut(s) 368
Hpy188I TCNGA 2 cut(s) 60, 438
Hpy188III TCNNGA 1 cut(s) 308
Hpy8I GTNNAC 1 cut(s) 368
Hpy99I CGWCG 2 cut(s) 136, 147
HpyAV CCTTC 2 cut(s) 172, 635
HpyCH4IV ACGT 2 cut(s) 395, 515
HpyCH4V TGCA 3 cut(s) 110, 527, 581
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 297, 475
HpyF3I CTNAG 3 cut(s) 48, 313, 495
HpySE526I ACGT 2 cut(s) 395, 515
Hsp92I GRCGYC 1 cut(s) 142
Hsp92II CATG 4 cut(s) 169, 527, 613, 655
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 5 cut(s) 7, 151, 219, 270, 569
LmnI GCTCC 3 cut(s) 353, 380, 407
Lsp1109I GCAGC 2 cut(s) 386, 593
LweI GCATC 3 cut(s) 342, 500, 593
MaeI CTAG 3 cut(s) 138, 308, 662
MaeII ACGT 2 cut(s) 395, 515
MaeIII GTNAC 1 cut(s) 13
MalI GATC 5 cut(s) 9, 153, 221, 272, 571
MboI GATC 5 cut(s) 7, 151, 219, 270, 569
MboII GAAGA 5 cut(s) 269, 328, 331, 451, 528
MfeI CAATTG 1 cut(s) 594
MhlI GDGCHC 2 cut(s) 293, 566
MlsI TGGCCA 1 cut(s) 300
MluCI AATT 2 cut(s) 303, 594
MluNI TGGCCA 1 cut(s) 300
MlyI GAGTC 2 cut(s) 84, 305
MmeI TCCRAC 2 cut(s) 416, 642
Mox20I TGGCCA 1 cut(s) 300
MscI TGGCCA 1 cut(s) 300
MslI CAYNNNNRTG 1 cut(s) 650
Msp20I TGGCCA 1 cut(s) 300
MspR9I CCNGG 2 cut(s) 432, 567
MunI CAATTG 1 cut(s) 594
MvaI CCWGG 2 cut(s) 432, 567
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 3 cut(s) 26, 297, 475
NdeII GATC 5 cut(s) 7, 151, 219, 270, 569
NlaIII CATG 4 cut(s) 169, 527, 613, 655
NlaIV GGNNCC 1 cut(s) 564
NspI RCATGY 2 cut(s) 527, 613
PciI ACATGT 1 cut(s) 609
PkrI GCNGC 7 cut(s) 31, 34, 85, 320, 401, 425, 583
PleI GAGTC 2 cut(s) 83, 305
PpsI GAGTC 2 cut(s) 83, 305
PscI ACATGT 1 cut(s) 609
Psp6I CCWGG 2 cut(s) 430, 565
PspFI CCCAGC 1 cut(s) 193
PspGI CCWGG 2 cut(s) 430, 565
PspN4I GGNNCC 1 cut(s) 564
PspOMI GGGCCC 1 cut(s) 562
PspPI GGNCC 2 cut(s) 562, 563
RseI CAYNNNNRTG 1 cut(s) 650
SatI GCNGC 7 cut(s) 30, 33, 84, 319, 400, 424, 582
Sau3AI GATC 5 cut(s) 7, 151, 219, 270, 569
Sau96I GGNCC 2 cut(s) 562, 563
SchI GAGTC 2 cut(s) 84, 305
ScrFI CCNGG 2 cut(s) 432, 567
SduI GDGCHC 2 cut(s) 293, 566
SetI ASST 8 cut(s) 22, 233, 367, 398, 420, 480, 518, 627
SfaNI GCATC 3 cut(s) 342, 500, 593
SfcI CTRYAG 2 cut(s) 322, 406
SmiMI CAYNNNNRTG 1 cut(s) 650
Sse9I AATT 2 cut(s) 303, 594
SsiI CCGC 5 cut(s) 29, 32, 83, 318, 424
SspMI CTAG 3 cut(s) 138, 308, 662
StyD4I CCNGG 2 cut(s) 430, 565
StyI CCWWGG 2 cut(s) 414, 470
TaiI ACGT 2 cut(s) 398, 518
TaqI TCGA 1 cut(s) 218
TasI AATT 2 cut(s) 303, 594
TauI GCSGC 5 cut(s) 32, 35, 86, 321, 426
TscAI CASTG 4 cut(s) 42, 117, 258, 377
TseI GCWGC 2 cut(s) 399, 581
TspDTI ATGAA 1 cut(s) 154
TspGWI ACGGA 1 cut(s) 276
TspRI CASTG 4 cut(s) 42, 117, 258, 377
XapI RAATTY 1 cut(s) 303
XbaI TCTAGA 1 cut(s) 307
XceI RCATGY 2 cut(s) 527, 613
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XspI CTAG 3 cut(s) 138, 308, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.