RLG00000013465

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000109
Physical Location & Seq
Forward (+)
31969482 .. 31974365
4884 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013465

Sequence Viewer

Length: 438 bp
ATGGCCAGTGCATTGGTCAAGGAAGCAGTGGCTCTTGCCCGCAGTGCTCTAGCAGGAACGCTGGTGCTGGCCGCATGCAGGCCAGGGAAGTTGTTGGTCTCCCCTCCGAAAAAGAGGAAGGTATGGCGGCCTATTGGGGCTAAAAATAAGCATCAGGTGGTAGACGTTAACCCATGGAAGCTAGAATATGCGGCATCAAAGAAGGTGAAGAGGCGCAAGTTCTCTAATGCGCAACGGTCTCCAAAGATGGACGACGAGCTAGCTGGTCTTCTCTGGTGGCTGGCCGTGTTTGGATCGCGGCTTTTCTACTCTGGTAGTCTCAAGTTTTGTGAAGTTCTGGGCTTTTTTTTTTGGGGATTGGCTTATCTGATTGGATTTTCATCAGAAGGCTGTCCATCCTTGCTATTGGTCACCGATCTCTGTAGGCCTCAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.17

Weight (kDa)

10.07

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 231
AccI GTMKAC 1 cut(s) 162
AccII CGCG 1 cut(s) 298
AciI CCGC 5 cut(s) 40, 72, 127, 191, 298
AclWI GGATC 1 cut(s) 301
AcoI YGGCCR 3 cut(s) 3, 69, 282
AfiI CCNNNNNNNGG 1 cut(s) 78
AjnI CCWGG 1 cut(s) 82
AluBI AGCT 3 cut(s) 181, 259, 263
AluI AGCT 3 cut(s) 181, 259, 263
Alw21I GWGCWC 1 cut(s) 49
Alw26I GTCTC 3 cut(s) 103, 243, 323
AlwI GGATC 1 cut(s) 301
AoxI GGCC 6 cut(s) 3, 69, 80, 128, 282, 425
AspLEI GCGC 2 cut(s) 216, 232
AsuHPI GGTGA 2 cut(s) 217, 403
AsuNHI GCTAGC 1 cut(s) 259
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 49
BccI CCATC 2 cut(s) 241, 403
BceAI ACGGC 1 cut(s) 269
BciT130I CCWGG 1 cut(s) 84
BcoDI GTCTC 3 cut(s) 103, 243, 323
BfaI CTAG 3 cut(s) 50, 182, 260
BfmI CTRYAG 1 cut(s) 421
BisI GCNGC 4 cut(s) 72, 128, 192, 299
BlsI GCNGC 4 cut(s) 73, 129, 193, 300
Bme1390I CCNGG 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 84
BmsI GCATC 2 cut(s) 160, 203
BmtI GCTAGC 1 cut(s) 263
BpiI GAAGAC 1 cut(s) 260
BpuEI CTTGAG 1 cut(s) 305
BsaBI GATNNNNATC 1 cut(s) 379
BsaI GGTCTC 2 cut(s) 103, 243
BsaJI CCNNGG 2 cut(s) 83, 173
Bsc4I CCNNNNNNNGG 1 cut(s) 78
Bse1I ACTGG 1 cut(s) 6
Bse8I GATNNNNATC 1 cut(s) 379
BseBI CCWGG 1 cut(s) 84
BseDI CCNNGG 2 cut(s) 83, 173
BseGI GGATG 1 cut(s) 395
BseJI GATNNNNATC 1 cut(s) 379
BseLI CCNNNNNNNGG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 6
Bsh1236I CGCG 1 cut(s) 298
BshFI GGCC 6 cut(s) 5, 71, 82, 130, 284, 427
BsiHKAI GWGCWC 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 78
BsmAI GTCTC 3 cut(s) 103, 243, 323
BsnI GGCC 6 cut(s) 5, 71, 82, 130, 284, 427
Bso31I GGTCTC 2 cut(s) 103, 243
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 2 cut(s) 293, 415
Bsp19I CCATGG 1 cut(s) 173
BspACI CCGC 5 cut(s) 40, 72, 127, 191, 298
BspANI GGCC 6 cut(s) 5, 71, 82, 130, 284, 427
BspFNI CGCG 1 cut(s) 298
BspOI GCTAGC 1 cut(s) 263
BspPI GGATC 1 cut(s) 301
BspTNI GGTCTC 2 cut(s) 103, 243
BsrI ACTGG 1 cut(s) 6
BssECI CCNNGG 2 cut(s) 83, 173
BssMI GATC 2 cut(s) 293, 415
BssT1I CCWWGG 1 cut(s) 173
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 237
Bst6I CTCTTC 1 cut(s) 203
BstC8I GCNNGC 6 cut(s) 40, 69, 76, 80, 261, 282
BstDEI CTNAG 1 cut(s) 429
BstDSI CCRYGG 1 cut(s) 173
BstEII GGTNACC 1 cut(s) 409
BstF5I GGATG 1 cut(s) 395
BstFNI CGCG 1 cut(s) 298
BstHHI GCGC 2 cut(s) 216, 232
BstKTI GATC 2 cut(s) 296, 418
BstMAI GTCTC 3 cut(s) 103, 243, 323
BstMBI GATC 2 cut(s) 293, 415
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNI CCWGG 1 cut(s) 84
BstNSI RCATGY 1 cut(s) 78
BstPI GGTNACC 1 cut(s) 409
BstSCI CCNGG 1 cut(s) 82
BstSFI CTRYAG 1 cut(s) 421
BstUI CGCG 1 cut(s) 298
BstV2I GAAGAC 1 cut(s) 260
BstXI CCANNNNNNTGG 1 cut(s) 13
BsuRI GGCC 6 cut(s) 5, 71, 82, 130, 284, 427
BtgI CCRYGG 1 cut(s) 173
BtsCI GGATG 1 cut(s) 395
BtsI GCAGTG 2 cut(s) 33, 49
BtsIMutI CAGTG 4 cut(s) 13, 33, 49, 437
Cac8I GCNNGC 6 cut(s) 40, 69, 76, 80, 261, 282
CfoI GCGC 2 cut(s) 216, 232
CviAII CATG 2 cut(s) 75, 174
DdeI CTNAG 1 cut(s) 429
DpnI GATC 2 cut(s) 295, 417
DpnII GATC 2 cut(s) 293, 415
EaeI YGGCCR 3 cut(s) 3, 69, 282
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco130I CCWWGG 1 cut(s) 173
Eco147I AGGCCT 1 cut(s) 427
Eco31I GGTCTC 2 cut(s) 103, 243
Eco91I GGTNACC 1 cut(s) 409
EcoO65I GGTNACC 1 cut(s) 409
EcoRII CCWGG 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 173
ErhI CCWWGG 1 cut(s) 173
FaeI CATG 2 cut(s) 78, 177
FaiI YATR 4 cut(s) 76, 124, 175, 189
FatI CATG 2 cut(s) 74, 173
FauI CCCGC 1 cut(s) 47
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 4 cut(s) 72, 128, 192, 299
FokI GGATG 1 cut(s) 382
Fsp4HI GCNGC 4 cut(s) 72, 128, 192, 299
FspBI CTAG 3 cut(s) 50, 182, 260
FspI TGCGCA 1 cut(s) 231
GlaI GCGC 2 cut(s) 215, 231
GluI GCNGC 4 cut(s) 72, 128, 192, 299
HaeIII GGCC 6 cut(s) 5, 71, 82, 130, 284, 427
HhaI GCGC 2 cut(s) 216, 232
Hin1II CATG 2 cut(s) 78, 177
Hin6I GCGC 2 cut(s) 214, 230
HinP1I GCGC 2 cut(s) 214, 230
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HpaI GTTAAC 1 cut(s) 169
HphI GGTGA 2 cut(s) 217, 403
Hpy166II GTNNAC 2 cut(s) 163, 169
Hpy188I TCNGA 3 cut(s) 108, 369, 385
Hpy8I GTNNAC 2 cut(s) 163, 169
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 3 cut(s) 112, 196, 380
HpyCH4III ACNGT 1 cut(s) 237
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 2 cut(s) 11, 78
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 429
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 2 cut(s) 78, 177
HspAI GCGC 2 cut(s) 214, 230
KspAI GTTAAC 1 cut(s) 169
Kzo9I GATC 2 cut(s) 293, 415
LweI GCATC 2 cut(s) 160, 203
MaeI CTAG 3 cut(s) 50, 182, 260
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 409
MalI GATC 2 cut(s) 295, 417
MboI GATC 2 cut(s) 293, 415
MboII GAAGA 2 cut(s) 220, 260
MhlI GDGCHC 1 cut(s) 49
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 4 cut(s) 108, 114, 204, 438
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 168
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 84
MvnI CGCG 1 cut(s) 298
MwoI GCNNNNNNNGC 1 cut(s) 44
NcoI CCATGG 1 cut(s) 173
NdeII GATC 2 cut(s) 293, 415
NheI GCTAGC 1 cut(s) 259
NlaIII CATG 2 cut(s) 78, 177
NmuCI GTSAC 1 cut(s) 409
NsbI TGCGCA 1 cut(s) 231
NspI RCATGY 1 cut(s) 78
PaeI GCATGC 1 cut(s) 78
PceI AGGCCT 1 cut(s) 427
PkrI GCNGC 4 cut(s) 73, 129, 193, 300
Psp6I CCWGG 1 cut(s) 82
PspEI GGTNACC 1 cut(s) 409
PspGI CCWGG 1 cut(s) 82
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 4 cut(s) 72, 128, 192, 299
Sau3AI GATC 2 cut(s) 293, 415
ScrFI CCNGG 1 cut(s) 84
SduI GDGCHC 1 cut(s) 49
SetI ASST 7 cut(s) 123, 159, 168, 183, 207, 261, 265
SfaNI GCATC 2 cut(s) 160, 203
SfcI CTRYAG 1 cut(s) 421
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SphI GCATGC 1 cut(s) 78
SseBI AGGCCT 1 cut(s) 427
SsiI CCGC 5 cut(s) 40, 72, 127, 191, 298
SspMI CTAG 3 cut(s) 50, 182, 260
StuI AGGCCT 1 cut(s) 427
StyD4I CCNGG 1 cut(s) 82
StyI CCWWGG 1 cut(s) 173
TaaI ACNGT 1 cut(s) 237
TaiI ACGT 1 cut(s) 168
TauI GCSGC 4 cut(s) 74, 130, 194, 301
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 4 cut(s) 13, 33, 49, 437
TseFI GTSAC 1 cut(s) 409
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 1 cut(s) 369
TspRI CASTG 4 cut(s) 13, 33, 49, 437
XceI RCATGY 1 cut(s) 78
XmiI GTMKAC 1 cut(s) 162
XspI CTAG 3 cut(s) 50, 182, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.