Rmu_sc0011618.1_g000004

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011618.1
OG0000109
Physical Location & Seq
Reverse (-)
13021 .. 14373
1353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011618.1_g000004.1.cds

Sequence Viewer

Length: 1296 bp
atggttgatctcatcaccgctcgtctagctgcggccttggccatctcggaggacggcgggacgtcctttggcccgactggtgctgctgctgtgtcttcccaccattttgcggtgggtaaattgctctctgttacggctaaacgccgcgccaatcccaaggcttttatgggcaccatgacctatatctgggggcttggtaatcgtttatcaaggattgtggatggtggtccatggttctttggtaagtgggcacttgctatgcgggagttcgatggcctgcagagtgtcgctgctgtcccgctcctctctgtgccggtttgggttgagattattggcctctctcctgcttttatcactgagggagcggtggcgctcattggggccacgttagtggaggtgttgcacctcgacaggccggggattcgaaagggtatggtgagggttcgggtccgacatgtcttgtcaacgccggtgagtcaggtattccctccttccacttttgatttcatgtctggagcttctgctactgtgagattcaaatatgaacgtctcgttggattctgtcgtgtctgtgggatgatggagcacccacgatctggttgtgctggagccccagaggcggtggttgtctcaatcggtcataaccctaaccctaactcggctagggtttcatcacctgctagtcagcaagctccgagccttgcggaggtgttggctcaatctccagcaccgaatttgttcgctactacgcccatatcacttcacattcctggtatttctggatcggccttcgctgcacatttggccaaggttccagctccagtaactgtacctatcatgaagcctatgcagattaatgataaggccgataatcccattacagggaataagagatctgcaacggtggctttagtacaatattcaaagcgcaagagagcagatgttgtgccccctccaactgcttcggttgtgttggattttgaactagaactagctctgaagaataccaatgacatcattttggtgtcccctgctaagaaggcaaaggttgggagccatccgggtcggaagaacaaccctaaacctgctagtttgaagctcaggaagctgacaactgaggaatccaaacctcggcggaagaggaacttcaaggcaattgtactctctccttcatttggagaaggtcagatggaagcggtccctgcagcagctccaaaacaaaatgtggaggagataccgtcctccagcaaagctcctgagccgaaggaaagcactctcaagagtgccctagagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

431

Amino Acids

45.74

Weight (kDa)

10.06

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 685
AatII GACGTC 1 cut(s) 65
Acc36I ACCTGC 2 cut(s) 685, 1093
AccB1I GGYRCC 1 cut(s) 170
AccB7I CCANNNNNTGG 1 cut(s) 596
AccBSI CCGCTC 3 cut(s) 20, 301, 365
AccII CGCG 1 cut(s) 147
AclWI GGATC 1 cut(s) 790
AcoI YGGCCR 2 cut(s) 39, 804
AcsI RAATTY 1 cut(s) 733
AcuI CTGAAG 1 cut(s) 1019
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 3 cut(s) 831, 915, 1161
AflIII ACRYGT 1 cut(s) 454
AgsI TTSAA 5 cut(s) 538, 924, 983, 1096, 1150
AjnI CCWGG 1 cut(s) 769
AjuI GAANNNNNNNTTGG 2 cut(s) 537, 569
AleI CACNNNNGTG 1 cut(s) 389
AluBI AGCT 9 cut(s) 29, 518, 692, 818, 995, 1099, 1108, 1211, 1253
AluI AGCT 9 cut(s) 29, 518, 692, 818, 995, 1099, 1108, 1211, 1253
Alw21I GWGCWC 1 cut(s) 588
Alw26I GTCTC 2 cut(s) 554, 634
AlwI GGATC 1 cut(s) 790
AlwNI CAGNNNCTG 1 cut(s) 827
ApeKI GCWGC 7 cut(s) 29, 83, 86, 290, 794, 1205, 1208
ApoI RAATTY 1 cut(s) 733
AseI ATTAAT 1 cut(s) 855
Asp700I GAANNNNTTC 1 cut(s) 737
AspLEI GCGC 3 cut(s) 149, 373, 930
AspS9I GGNCC 5 cut(s) 71, 227, 381, 448, 1198
AsuC2I CCSGG 2 cut(s) 417, 1062
AsuHPI GGTGA 4 cut(s) 7, 448, 484, 666
AsuII TTCGAA 1 cut(s) 424
AvaII GGWCC 3 cut(s) 227, 448, 1198
BaeGI GKGCMC 4 cut(s) 173, 253, 951, 1288
BalI TGGCCA 2 cut(s) 41, 806
BanI GGYRCC 1 cut(s) 170
BanII GRGCYC 1 cut(s) 613
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 588
BbvI GCAGC 7 cut(s) 16, 70, 73, 277, 781, 1217, 1220
BccI CCATC 6 cut(s) 50, 215, 266, 574, 1065, 1183
BceAI ACGGC 2 cut(s) 70, 150
BciT130I CCWGG 1 cut(s) 771
BcnI CCSGG 2 cut(s) 417, 1062
BcoDI GTCTC 2 cut(s) 554, 634
BfaI CTAG 7 cut(s) 26, 663, 681, 986, 992, 1089, 1289
BfmI CTRYAG 2 cut(s) 278, 1203
BfoI RGCGCY 1 cut(s) 374
BfuAI ACCTGC 2 cut(s) 685, 1093
BglI GCCNNNNNGGC 1 cut(s) 617
BglII AGATCT 1 cut(s) 893
BisI GCNGC 9 cut(s) 30, 33, 84, 87, 145, 291, 795, 1206, 1209
BlsI GCNGC 9 cut(s) 31, 34, 85, 88, 146, 292, 796, 1207, 1210
Bme1390I CCNGG 3 cut(s) 417, 771, 1062
Bme18I GGWCC 3 cut(s) 227, 448, 1198
BmgT120I GGNCC 5 cut(s) 71, 227, 381, 448, 1198
BmiI GGNNCC 7 cut(s) 172, 382, 449, 610, 813, 1055, 1200
BmrFI CCNGG 3 cut(s) 417, 771, 1062
BpiI GAAGAC 1 cut(s) 87
BpmI CTGGAG 5 cut(s) 534, 627, 708, 804, 1228
Bpu10I CCTNAGC 2 cut(s) 1100, 1257
Bpu14I TTCGAA 1 cut(s) 424
BpuEI CTTGAG 1 cut(s) 1262
BpuMI CCSGG 2 cut(s) 417, 1062
BsaHI GRCGYC 1 cut(s) 62
BsaJI CCNNGG 6 cut(s) 36, 156, 230, 416, 807, 1130
BsaXI ACNNNNNCTCC 2 cut(s) 1223, 1253
Bse118I RCCGGY 2 cut(s) 313, 469
Bse1I ACTGG 2 cut(s) 82, 821
BseBI CCWGG 1 cut(s) 771
BseDI CCNNGG 6 cut(s) 36, 156, 230, 416, 807, 1130
BseGI GGATG 3 cut(s) 226, 582, 1057
BseMII CTCAG 4 cut(s) 348, 1107, 1114, 1248
BseNI ACTGG 2 cut(s) 82, 821
BseRI GAGGAG 2 cut(s) 293, 1244
BseSI GKGCMC 4 cut(s) 173, 253, 951, 1288
BseXI GCAGC 7 cut(s) 16, 70, 73, 277, 781, 1217, 1220
BsgI GTGCAG 1 cut(s) 780
Bsh1236I CGCG 1 cut(s) 147
BshNI GGYRCC 1 cut(s) 170
BsiHKAI GWGCWC 1 cut(s) 588
BsiSI CCGG 4 cut(s) 314, 416, 470, 1061
BslFI GGGAC 4 cut(s) 73, 281, 1012, 1184
BsmAI GTCTC 2 cut(s) 554, 634
BsmBI CGTCTC 1 cut(s) 554
BsmFI GGGAC 4 cut(s) 73, 281, 1012, 1184
Bsp119I TTCGAA 1 cut(s) 424
Bsp1286I GDGCHC 6 cut(s) 173, 253, 588, 613, 951, 1288
Bsp143I GATC 4 cut(s) 7, 593, 782, 893
Bsp19I CCATGG 1 cut(s) 230
BspCNI CTCAG 4 cut(s) 349, 1108, 1113, 1249
BspFNI CGCG 1 cut(s) 147
BspHI TCATGA 1 cut(s) 837
BspLI GGNNCC 7 cut(s) 172, 382, 449, 610, 813, 1055, 1200
BspMAI CTGCAG 2 cut(s) 282, 1207
BspMI ACCTGC 2 cut(s) 685, 1093
BspPI GGATC 1 cut(s) 790
BspT104I TTCGAA 1 cut(s) 424
BspT107I GGYRCC 1 cut(s) 170
BsrBI CCGCTC 3 cut(s) 20, 301, 365
BsrFI RCCGGY 2 cut(s) 313, 469
BsrI ACTGG 2 cut(s) 82, 821
BssAI RCCGGY 2 cut(s) 313, 469
BssECI CCNNGG 6 cut(s) 36, 156, 230, 416, 807, 1130
BssMI GATC 4 cut(s) 7, 593, 782, 893
BssNI GRCGYC 1 cut(s) 62
BssT1I CCWWGG 4 cut(s) 36, 156, 230, 807
Bst2UI CCWGG 1 cut(s) 771
Bst4CI ACNGT 4 cut(s) 529, 829, 904, 1239
Bst6I CTCTTC 1 cut(s) 1133
BstACI GRCGYC 1 cut(s) 62
BstBI TTCGAA 1 cut(s) 424
BstC8I GCNNGC 2 cut(s) 278, 690
BstDEI CTNAG 5 cut(s) 357, 1035, 1100, 1116, 1257
BstDSI CCRYGG 1 cut(s) 230
BstENI CCTNNNNNAGG 1 cut(s) 704
BstF5I GGATG 3 cut(s) 226, 582, 1057
BstFNI CGCG 1 cut(s) 147
BstH2I RGCGCY 1 cut(s) 374
BstHHI GCGC 3 cut(s) 149, 373, 930
BstKTI GATC 4 cut(s) 10, 596, 785, 896
BstMAI GTCTC 2 cut(s) 554, 634
BstMBI GATC 4 cut(s) 7, 593, 782, 893
BstMWI GCNNNNNNNGC 9 cut(s) 26, 38, 617, 794, 803, 905, 1040, 1105, 1202
BstNI CCWGG 1 cut(s) 771
BstNSI RCATGY 1 cut(s) 458
BstSCI CCNGG 3 cut(s) 415, 769, 1060
BstSFI CTRYAG 2 cut(s) 278, 1203
BstSLI GKGCMC 4 cut(s) 173, 253, 951, 1288
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 7 cut(s) 16, 70, 73, 277, 781, 1217, 1220
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 893
BstXI CCANNNNNNTGG 1 cut(s) 391
BstYI RGATCY 1 cut(s) 893
BtgI CCRYGG 1 cut(s) 230
BtsCI GGATG 3 cut(s) 226, 582, 1057
BtsIMutI CAGTG 1 cut(s) 354
BveI ACCTGC 2 cut(s) 685, 1093
Cac8I GCNNGC 2 cut(s) 278, 690
CaiI CAGNNNCTG 1 cut(s) 827
CciI TCATGA 1 cut(s) 837
CfoI GCGC 3 cut(s) 149, 373, 930
Cfr10I RCCGGY 2 cut(s) 313, 469
Cfr13I GGNCC 5 cut(s) 71, 227, 381, 448, 1198
Csp6I GTAC 3 cut(s) 830, 914, 1160
CspCI CAANNNNNGTGG 2 cut(s) 198, 233
CviAII CATG 5 cut(s) 175, 231, 455, 508, 838
CviQI GTAC 3 cut(s) 830, 914, 1160
DdeI CTNAG 5 cut(s) 357, 1035, 1100, 1116, 1257
DpnI GATC 4 cut(s) 9, 595, 784, 895
DpnII GATC 4 cut(s) 7, 593, 782, 893
EaeI YGGCCR 2 cut(s) 39, 804
Eam1104I CTCTTC 1 cut(s) 1133
EarI CTCTTC 1 cut(s) 1133
EciI GGCGGA 1 cut(s) 1150
Eco130I CCWWGG 4 cut(s) 36, 156, 230, 807
Eco24I GRGCYC 1 cut(s) 613
Eco47I GGWCC 3 cut(s) 227, 448, 1198
Eco57I CTGAAG 1 cut(s) 1019
EcoNI CCTNNNNNAGG 1 cut(s) 704
EcoRII CCWGG 1 cut(s) 769
EcoT14I CCWWGG 4 cut(s) 36, 156, 230, 807
EcoT38I GRGCYC 1 cut(s) 613
ErhI CCWWGG 4 cut(s) 36, 156, 230, 807
Esp3I CGTCTC 1 cut(s) 554
FaeI CATG 5 cut(s) 178, 234, 458, 511, 841
FalI AAGNNNNNCTT 2 cut(s) 1130, 1162
FaqI GGGAC 4 cut(s) 73, 281, 1012, 1184
FatI CATG 5 cut(s) 174, 230, 454, 507, 837
FauI CCCGC 3 cut(s) 50, 255, 306
Fnu4HI GCNGC 9 cut(s) 30, 33, 84, 87, 145, 291, 795, 1206, 1209
FokI GGATG 3 cut(s) 233, 589, 1044
FriOI GRGCYC 1 cut(s) 613
Fsp4HI GCNGC 9 cut(s) 30, 33, 84, 87, 145, 291, 795, 1206, 1209
FspBI CTAG 7 cut(s) 26, 663, 681, 986, 992, 1089, 1289
GlaI GCGC 3 cut(s) 148, 372, 929
GluI GCNGC 9 cut(s) 30, 33, 84, 87, 145, 291, 795, 1206, 1209
GsuI CTGGAG 5 cut(s) 534, 627, 708, 804, 1228
HaeII RGCGCY 1 cut(s) 374
HapII CCGG 4 cut(s) 314, 416, 470, 1061
HhaI GCGC 3 cut(s) 149, 373, 930
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 5 cut(s) 178, 234, 458, 511, 841
Hin6I GCGC 3 cut(s) 147, 371, 928
HinP1I GCGC 3 cut(s) 147, 371, 928
HincII GTYRAC 1 cut(s) 465
HindII GTYRAC 1 cut(s) 465
HinfI GANTC 5 cut(s) 421, 475, 534, 558, 1121
HpaII CCGG 4 cut(s) 314, 416, 470, 1061
HphI GGTGA 4 cut(s) 7, 448, 484, 666
Hpy166II GTNNAC 1 cut(s) 465
Hpy188I TCNGA 6 cut(s) 49, 452, 696, 999, 1068, 1188
Hpy188III TCNNGA 6 cut(s) 513, 780, 838, 1102, 1256, 1279
Hpy8I GTNNAC 1 cut(s) 465
HpyAV CCTTC 6 cut(s) 501, 799, 1033, 1175, 1179, 1258
HpyCH4III ACNGT 4 cut(s) 529, 829, 904, 1239
HpyCH4IV ACGT 3 cut(s) 62, 386, 547
HpyCH4V TGCA 6 cut(s) 280, 403, 797, 850, 899, 1205
HpyF10VI GCNNNNNNNGC 9 cut(s) 26, 38, 617, 794, 803, 905, 1040, 1105, 1202
HpyF3I CTNAG 5 cut(s) 357, 1035, 1100, 1116, 1257
HpySE526I ACGT 3 cut(s) 62, 386, 547
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 5 cut(s) 178, 234, 458, 511, 841
HspAI GCGC 3 cut(s) 147, 371, 928
Kzo9I GATC 4 cut(s) 7, 593, 782, 893
Lsp1109I GCAGC 7 cut(s) 16, 70, 73, 277, 781, 1217, 1220
MaeI CTAG 7 cut(s) 26, 663, 681, 986, 992, 1089, 1289
MaeII ACGT 3 cut(s) 62, 386, 547
MaeIII GTNAC 2 cut(s) 130, 823
MalI GATC 4 cut(s) 9, 595, 784, 895
MbiI CCGCTC 3 cut(s) 20, 301, 365
MboI GATC 4 cut(s) 7, 593, 782, 893
MboII GAAGA 4 cut(s) 87, 1012, 1081, 1150
MfeI CAATTG 1 cut(s) 1155
MflI RGATCY 1 cut(s) 893
MhlI GDGCHC 6 cut(s) 173, 253, 588, 613, 951, 1288
MlsI TGGCCA 2 cut(s) 41, 806
MluCI AATT 3 cut(s) 119, 733, 1155
MluNI TGGCCA 2 cut(s) 41, 806
MlyI GAGTC 1 cut(s) 484
MmeI TCCRAC 5 cut(s) 475, 535, 954, 980, 1046
Mox20I TGGCCA 2 cut(s) 41, 806
MroXI GAANNNNTTC 1 cut(s) 737
MscI TGGCCA 2 cut(s) 41, 806
MseI TTAA 1 cut(s) 855
MslI CAYNNNNRTG 2 cut(s) 389, 1022
Msp20I TGGCCA 2 cut(s) 41, 806
MspI CCGG 4 cut(s) 314, 416, 470, 1061
MspR9I CCNGG 3 cut(s) 417, 771, 1062
MunI CAATTG 1 cut(s) 1155
MvaI CCWGG 1 cut(s) 771
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 9 cut(s) 26, 38, 617, 794, 803, 905, 1040, 1105, 1202
NciI CCSGG 2 cut(s) 417, 1062
NcoI CCATGG 1 cut(s) 230
NdeII GATC 4 cut(s) 7, 593, 782, 893
NlaIII CATG 5 cut(s) 178, 234, 458, 511, 841
NlaIV GGNNCC 7 cut(s) 172, 382, 449, 610, 813, 1055, 1200
NmeAIII GCCGAG 2 cut(s) 638, 1111
NspI RCATGY 1 cut(s) 458
NspV TTCGAA 1 cut(s) 424
OliI CACNNNNGTG 1 cut(s) 389
PagI TCATGA 1 cut(s) 837
PaqCI CACCTGC 1 cut(s) 685
PciI ACATGT 1 cut(s) 454
PdmI GAANNNNTTC 1 cut(s) 737
PfeI GAWTC 4 cut(s) 421, 534, 558, 1121
PflMI CCANNNNNTGG 1 cut(s) 596
PkrI GCNGC 9 cut(s) 31, 34, 85, 88, 146, 292, 796, 1207, 1210
PleI GAGTC 1 cut(s) 483
PpsI GAGTC 1 cut(s) 483
PscI ACATGT 1 cut(s) 454
PshBI ATTAAT 1 cut(s) 855
Psp6I CCWGG 1 cut(s) 769
PspGI CCWGG 1 cut(s) 769
PspN4I GGNNCC 7 cut(s) 172, 382, 449, 610, 813, 1055, 1200
PspPI GGNCC 5 cut(s) 71, 227, 381, 448, 1198
PstI CTGCAG 2 cut(s) 282, 1207
PstNI CAGNNNCTG 1 cut(s) 827
PsuI RGATCY 1 cut(s) 893
RsaI GTAC 3 cut(s) 831, 915, 1161
RsaNI GTAC 3 cut(s) 830, 914, 1160
RseI CAYNNNNRTG 2 cut(s) 389, 1022
SaqAI TTAA 1 cut(s) 855
SatI GCNGC 9 cut(s) 30, 33, 84, 87, 145, 291, 795, 1206, 1209
Sau3AI GATC 4 cut(s) 7, 593, 782, 893
Sau96I GGNCC 5 cut(s) 71, 227, 381, 448, 1198
SchI GAGTC 1 cut(s) 484
ScrFI CCNGG 3 cut(s) 417, 771, 1062
SduI GDGCHC 6 cut(s) 173, 253, 588, 613, 951, 1288
SfcI CTRYAG 2 cut(s) 278, 1203
SfuI TTCGAA 1 cut(s) 424
SgrAI CRCCGGYG 1 cut(s) 469
SinI GGWCC 3 cut(s) 227, 448, 1198
SmiMI CAYNNNNRTG 2 cut(s) 389, 1022
SmlI CTYRAG 1 cut(s) 1277
SmoI CTYRAG 1 cut(s) 1277
Sse9I AATT 3 cut(s) 119, 733, 1155
SspI AATATT 1 cut(s) 920
SspMI CTAG 7 cut(s) 26, 663, 681, 986, 992, 1089, 1289
StyD4I CCNGG 3 cut(s) 415, 769, 1060
StyI CCWWGG 4 cut(s) 36, 156, 230, 807
TaaI ACNGT 4 cut(s) 529, 829, 904, 1239
TaiI ACGT 3 cut(s) 65, 389, 550
TaqI TCGA 3 cut(s) 270, 408, 424
TaqII GACCGA 1 cut(s) 626
TasI AATT 3 cut(s) 119, 733, 1155
TatI WGTACW 2 cut(s) 913, 1159
TauI GCSGC 2 cut(s) 35, 147
TfiI GAWTC 4 cut(s) 421, 534, 558, 1121
Tru1I TTAA 1 cut(s) 855
Tru9I TTAA 1 cut(s) 855
TscAI CASTG 1 cut(s) 361
TseI GCWGC 7 cut(s) 29, 83, 86, 290, 794, 1205, 1208
TspDTI ATGAA 5 cut(s) 496, 558, 660, 854, 1161
TspRI CASTG 1 cut(s) 361
Van91I CCANNNNNTGG 1 cut(s) 596
VpaK11BI GGWCC 3 cut(s) 227, 448, 1198
VspI ATTAAT 1 cut(s) 855
XagI CCTNNNNNAGG 1 cut(s) 704
XapI RAATTY 1 cut(s) 733
XceI RCATGY 1 cut(s) 458
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 737
XspI CTAG 7 cut(s) 26, 663, 681, 986, 992, 1089, 1289
ZraI GACGTC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.