RLG00000036301

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000109
Physical Location & Seq
Reverse (-)
78626474 .. 78627559
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036301

Sequence Viewer

Length: 558 bp
ATGTGTGACGGTGGCGCTAAGGTTGATTTGGAAACAACCAAATCGATTGGGGTTGGCTATGGCGGCAATGAGTTTGGTCTGGGCTTAGTCAGGGGTACAAGTTCTAATATCTTGGCTACAGGTGGTGGGGATGGTGGCTTGACCACTGATGCGGATGTTGGGTTGCTCACCGGGTTAGCAAAATTGTATGGGCATAATGTGCTAGCACATCAACTATACCTCAAGACAAAAAGGAGAGAGTTTCTCAGAGCTAGGGTTTCACGAACTTTCATTTCAGCACTGTCGTCATCAACAATGGTTGAGGAGGTCTCAACACGGCTTGCCGCCGCACTTGCTATCTCGGACAATAGAAGTGTGTCCTTTGGCACTGCCAGGGCAGCTACAATTTTTGATTACTCTTCTGGTGTTGGGAAATTGATCTCTCAGAAGAAAAAAACATACCCTAAATCTTTGATGGGGACTATGGCATTTGTATGGACCTTGAAGAATTGTTTATCGATTCACAATCAAATAGATAGGTTCATTCTGAAACTCTCAAAGGAGGATGAAAGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

19.79

Weight (kDa)

9.6

Isoelectric Point (pI)

30.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 63, 152, 324, 327
AfaI GTAC 1 cut(s) 97
AgsI TTSAA 1 cut(s) 484
AjnI CCWGG 1 cut(s) 371
AluBI AGCT 2 cut(s) 251, 380
AluI AGCT 2 cut(s) 251, 380
Alw26I GTCTC 1 cut(s) 313
ApeKI GCWGC 1 cut(s) 377
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 477
AsuC2I CCSGG 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 160
AsuNHI GCTAGC 1 cut(s) 202
AvaII GGWCC 1 cut(s) 477
BbvI GCAGC 1 cut(s) 389
BccI CCATC 2 cut(s) 125, 448
BceAI ACGGC 1 cut(s) 332
BciT130I CCWGG 1 cut(s) 373
BcnI CCSGG 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 313
BfaI CTAG 2 cut(s) 203, 252
BfmI CTRYAG 1 cut(s) 117
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 4 cut(s) 64, 324, 327, 378
BlsI GCNGC 4 cut(s) 65, 325, 328, 379
Bme1390I CCNGG 2 cut(s) 172, 373
Bme18I GGWCC 1 cut(s) 477
BmgT120I GGNCC 1 cut(s) 477
BmrFI CCNGG 2 cut(s) 172, 373
BmsI GCATC 1 cut(s) 139
BmtI GCTAGC 1 cut(s) 206
BplI GAGNNNNNCTC 4 cut(s) 228, 260, 293, 325
Bpu10I CCTNAGC 1 cut(s) 18
BpuEI CTTGAG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 172
Bsa29I ATCGAT 2 cut(s) 44, 497
BsaI GGTCTC 1 cut(s) 313
BsaJI CCNNGG 1 cut(s) 372
Bse3DI GCAATG 1 cut(s) 73
BseBI CCWGG 1 cut(s) 373
BseCI ATCGAT 2 cut(s) 44, 497
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 3 cut(s) 136, 160, 550
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 2 cut(s) 259, 437
BseRI GAGGAG 1 cut(s) 317
BseXI GCAGC 1 cut(s) 389
BshVI ATCGAT 2 cut(s) 44, 497
BsiSI CCGG 1 cut(s) 171
BslFI GGGAC 1 cut(s) 472
BsmAI GTCTC 1 cut(s) 313
BsmFI GGGAC 1 cut(s) 472
Bso31I GGTCTC 1 cut(s) 313
Bsp143I GATC 1 cut(s) 417
BspACI CCGC 4 cut(s) 63, 152, 324, 327
BspCNI CTCAG 2 cut(s) 258, 436
BspDI ATCGAT 2 cut(s) 44, 497
BspOI GCTAGC 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 313
BsrDI GCAATG 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 373
Bst4CI ACNGT 2 cut(s) 11, 282
Bst6I CTCTTC 1 cut(s) 403
BstAPI GCANNNNNTGC 1 cut(s) 199
BstC8I GCNNGC 2 cut(s) 204, 321
BstDEI CTNAG 4 cut(s) 18, 85, 245, 423
BstF5I GGATG 3 cut(s) 136, 160, 550
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 1 cut(s) 420
BstMAI GTCTC 1 cut(s) 313
BstMBI GATC 1 cut(s) 417
BstMWI GCNNNNNNNGC 4 cut(s) 63, 199, 332, 377
BstNI CCWGG 1 cut(s) 373
BstSCI CCNGG 2 cut(s) 170, 371
BstSFI CTRYAG 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 389
Bsu15I ATCGAT 2 cut(s) 44, 497
BsuTUI ATCGAT 2 cut(s) 44, 497
BtsCI GGATG 3 cut(s) 136, 160, 550
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 3 cut(s) 144, 278, 366
Cac8I GCNNGC 2 cut(s) 204, 321
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 477
ClaI ATCGAT 2 cut(s) 44, 497
Csp6I GTAC 1 cut(s) 96
CviJI RGCY 7 cut(s) 57, 84, 116, 138, 251, 319, 380
CviKI_1 RGCY 7 cut(s) 57, 84, 116, 138, 251, 319, 380
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 4 cut(s) 18, 85, 245, 423
DpnI GATC 1 cut(s) 419
DpnII GATC 1 cut(s) 417
Eam1104I CTCTTC 1 cut(s) 403
EarI CTCTTC 1 cut(s) 403
Eco31I GGTCTC 1 cut(s) 313
Eco47I GGWCC 1 cut(s) 477
EcoRII CCWGG 1 cut(s) 371
FaiI YATR 7 cut(s) 60, 189, 195, 217, 439, 464, 475
FaqI GGGAC 1 cut(s) 472
Fnu4HI GCNGC 4 cut(s) 64, 324, 327, 378
FokI GGATG 2 cut(s) 143, 167
Fsp4HI GCNGC 4 cut(s) 64, 324, 327, 378
FspBI CTAG 2 cut(s) 203, 252
GlaI GCGC 1 cut(s) 16
GluI GCNGC 4 cut(s) 64, 324, 327, 378
HaeII RGCGCY 1 cut(s) 18
HapII CCGG 1 cut(s) 171
HhaI GCGC 1 cut(s) 17
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HinfI GANTC 1 cut(s) 499
HpaII CCGG 1 cut(s) 171
HphI GGTGA 1 cut(s) 160
Hpy188I TCNGA 4 cut(s) 248, 343, 426, 528
Hpy188III TCNNGA 2 cut(s) 223, 261
HpyCH4III ACNGT 2 cut(s) 11, 282
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 199, 332, 377
HpyF3I CTNAG 4 cut(s) 18, 85, 245, 423
HspAI GCGC 1 cut(s) 15
Kzo9I GATC 1 cut(s) 417
LpnPI CCDG 7 cut(s) 65, 76, 105, 184, 358, 385, 387
Lsp1109I GCAGC 1 cut(s) 389
LweI GCATC 1 cut(s) 139
MaeI CTAG 2 cut(s) 203, 252
MaeIII GTNAC 1 cut(s) 5
MalI GATC 1 cut(s) 419
MboI GATC 1 cut(s) 417
MboII GAAGA 3 cut(s) 390, 439, 496
MluCI AATT 4 cut(s) 182, 384, 413, 487
MnlI CCTC 4 cut(s) 230, 295, 298, 535
MslI CAYNNNNRTG 1 cut(s) 472
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 2 cut(s) 172, 373
MvaI CCWGG 1 cut(s) 373
MwoI GCNNNNNNNGC 4 cut(s) 63, 199, 332, 377
NciI CCSGG 1 cut(s) 172
NdeII GATC 1 cut(s) 417
NheI GCTAGC 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 5
PfeI GAWTC 1 cut(s) 499
PkrI GCNGC 4 cut(s) 65, 325, 328, 379
Psp6I CCWGG 1 cut(s) 371
PspGI CCWGG 1 cut(s) 371
PspPI GGNCC 1 cut(s) 477
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
RseI CAYNNNNRTG 1 cut(s) 472
SatI GCNGC 4 cut(s) 64, 324, 327, 378
Sau3AI GATC 1 cut(s) 417
Sau96I GGNCC 1 cut(s) 477
ScrFI CCNGG 2 cut(s) 172, 373
SetI ASST 8 cut(s) 24, 124, 222, 253, 309, 382, 482, 521
SfaNI GCATC 1 cut(s) 139
SfcI CTRYAG 1 cut(s) 117
SinI GGWCC 1 cut(s) 477
SmiMI CAYNNNNRTG 1 cut(s) 472
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 4 cut(s) 182, 384, 413, 487
SsiI CCGC 4 cut(s) 63, 152, 324, 327
SspMI CTAG 2 cut(s) 203, 252
StyD4I CCNGG 2 cut(s) 170, 371
TaaI ACNGT 2 cut(s) 11, 282
TaqI TCGA 2 cut(s) 44, 497
TasI AATT 4 cut(s) 182, 384, 413, 487
TauI GCSGC 3 cut(s) 66, 326, 329
TfiI GAWTC 1 cut(s) 499
TscAI CASTG 3 cut(s) 151, 285, 373
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 2 cut(s) 259, 511
TspRI CASTG 3 cut(s) 151, 285, 373
VpaK11BI GGWCC 1 cut(s) 477
XspI CTAG 2 cut(s) 203, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.