Rroxscaffold_5G00342730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000109
Physical Location & Seq
Forward (+)
11866134 .. 11867080
947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00342730.1

Sequence Viewer

Length: 657 bp
ATGGCGTTGATGGACGCCATGCTGGGCGAGGTTGTTGAATTGGATTGTATAGTGATCCGTCGTGGCACAGGCGCACAACACCCCGGAACCTATGGACTGTTGGAGCATCCCATATCTGGTTGTGTTGGGCTGTCGGCTAAGATGCAGCCTATCCAGATTGTCCTTCAACACCGGGGGCATCTAGCTCAGGCCAGGAAGCGTGCTGCTGCACCACTGACGATGATCCAGTACAACAAGATAACCACGGGCTCCAAGAAAGGGAATGGCCGTCAAGTCAGGGAAGCAGACTCTGTAGGGATAAAACCTGAGCTAGCTTTCAAAAGTGCAAATGGCATCATTGTGGTCTCTTCTCCAAAGAGATCTAGGGTCGGTCGGATTTTAGGAAGAAAGACTCATTCGAGCAAGGATGGATTGCAGCTCAAGAAACTCAAAATGGTTGGGGATTCCAAAGCCCATAAGAAGAGGGTAGTCAAGACGATGGTGGCCAAGGTGAAGGAGACCTCAGAAAGTGAGGATCTGTTAGCTATTGGGTTTGCATCCATTGAGGTTCTTGTGGAGGTGATCAAGGTGGCTGTTATAGAGACCGGGGAGGTTGGCATCGAGCTGGACGAGGTGGTTGGTACTCCGGCGAGTGCCCTTGAGTTGGGTGCTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

23.26

Weight (kDa)

9.63

Isoelectric Point (pI)

32.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 49, 217, 522
AcoI YGGCCR 2 cut(s) 265, 483
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 2 cut(s) 230, 622
AfiI CCNNNNNNNGG 3 cut(s) 116, 258, 643
AgsI TTSAA 3 cut(s) 38, 167, 319
AjnI CCWGG 1 cut(s) 191
AluBI AGCT 6 cut(s) 185, 310, 314, 418, 524, 604
AluI AGCT 6 cut(s) 185, 310, 314, 418, 524, 604
Alw26I GTCTC 3 cut(s) 349, 491, 575
AlwI GGATC 3 cut(s) 49, 217, 522
AlwNI CAGNNNCTG 1 cut(s) 290
AoxI GGCC 3 cut(s) 189, 265, 483
ApeKI GCWGC 4 cut(s) 145, 203, 206, 415
AspLEI GCGC 1 cut(s) 74
AsuC2I CCSGG 3 cut(s) 84, 173, 586
AsuHPI GGTGA 2 cut(s) 502, 571
AsuNHI GCTAGC 1 cut(s) 310
BaeGI GKGCMC 1 cut(s) 637
BalI TGGCCA 1 cut(s) 485
BanII GRGCYC 1 cut(s) 251
BbvI GCAGC 4 cut(s) 157, 190, 193, 427
BccI CCATC 3 cut(s) 4, 401, 472
BceAI ACGGC 1 cut(s) 252
BciT130I CCWGG 1 cut(s) 193
BclI TGATCA 1 cut(s) 561
BcnI CCSGG 3 cut(s) 84, 173, 586
BcoDI GTCTC 3 cut(s) 349, 491, 575
BfaI CTAG 3 cut(s) 182, 311, 363
BfmI CTRYAG 1 cut(s) 291
BglII AGATCT 1 cut(s) 359
BisI GCNGC 4 cut(s) 146, 204, 207, 416
BlsI GCNGC 4 cut(s) 147, 205, 208, 417
Bme1390I CCNGG 4 cut(s) 84, 173, 193, 586
BmiI GGNNCC 2 cut(s) 88, 250
BmrFI CCNGG 4 cut(s) 84, 173, 193, 586
BmsI GCATC 6 cut(s) 115, 132, 187, 342, 545, 606
BmtI GCTAGC 1 cut(s) 314
Bpu10I CCTNAGC 2 cut(s) 186, 306
BpuEI CTTGAG 1 cut(s) 404
BpuMI CCSGG 3 cut(s) 84, 173, 586
BsaHI GRCGYC 1 cut(s) 15
BsaI GGTCTC 3 cut(s) 349, 491, 575
BsaJI CCNNGG 5 cut(s) 82, 172, 243, 486, 585
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 258, 643
Bse1I ACTGG 1 cut(s) 226
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 5 cut(s) 82, 172, 243, 486, 585
BseGI GGATG 3 cut(s) 106, 412, 536
BseLI CCNNNNNNNGG 3 cut(s) 116, 258, 643
BseMII CTCAG 3 cut(s) 200, 297, 516
BseNI ACTGG 1 cut(s) 226
BseSI GKGCMC 1 cut(s) 637
BseXI GCAGC 4 cut(s) 157, 190, 193, 427
BseYI CCCAGC 1 cut(s) 22
BsgI GTGCAG 1 cut(s) 192
Bsh1285I CGRYCG 1 cut(s) 373
BshFI GGCC 3 cut(s) 191, 267, 485
BsiEI CGRYCG 1 cut(s) 373
BsiSI CCGG 4 cut(s) 84, 172, 585, 626
BslI CCNNNNNNNGG 3 cut(s) 116, 258, 643
BsmAI GTCTC 3 cut(s) 349, 491, 575
BsnI GGCC 3 cut(s) 191, 267, 485
Bso31I GGTCTC 3 cut(s) 349, 491, 575
Bsp1286I GDGCHC 2 cut(s) 251, 637
Bsp143I GATC 5 cut(s) 54, 222, 359, 514, 561
BspANI GGCC 3 cut(s) 191, 267, 485
BspCNI CTCAG 3 cut(s) 199, 298, 515
BspLI GGNNCC 2 cut(s) 88, 250
BspOI GCTAGC 1 cut(s) 314
BspPI GGATC 3 cut(s) 49, 217, 522
BspTNI GGTCTC 3 cut(s) 349, 491, 575
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 5 cut(s) 82, 172, 243, 486, 585
BssMI GATC 5 cut(s) 54, 222, 359, 514, 561
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 486
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 1 cut(s) 99
Bst6I CTCTTC 2 cut(s) 352, 455
BstACI GRCGYC 1 cut(s) 15
BstC8I GCNNGC 2 cut(s) 201, 312
BstDEI CTNAG 4 cut(s) 138, 186, 306, 502
BstDSI CCRYGG 1 cut(s) 243
BstF5I GGATG 3 cut(s) 106, 412, 536
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 5 cut(s) 57, 225, 362, 517, 564
BstMAI GTCTC 3 cut(s) 349, 491, 575
BstMBI GATC 5 cut(s) 54, 222, 359, 514, 561
BstMCI CGRYCG 1 cut(s) 373
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 4 cut(s) 82, 171, 191, 584
BstSFI CTRYAG 1 cut(s) 291
BstSLI GKGCMC 1 cut(s) 637
BstV1I GCAGC 4 cut(s) 157, 190, 193, 427
BstX2I RGATCY 2 cut(s) 359, 514
BstYI RGATCY 2 cut(s) 359, 514
BsuRI GGCC 3 cut(s) 191, 267, 485
BtgI CCRYGG 1 cut(s) 243
BtsCI GGATG 3 cut(s) 106, 412, 536
BtsIMutI CAGTG 1 cut(s) 212
Cac8I GCNNGC 2 cut(s) 201, 312
CaiI CAGNNNCTG 1 cut(s) 290
CfoI GCGC 1 cut(s) 74
CseI GACGC 1 cut(s) 23
Csp6I GTAC 2 cut(s) 229, 621
CviAII CATG 1 cut(s) 19
CviQI GTAC 2 cut(s) 229, 621
DdeI CTNAG 4 cut(s) 138, 186, 306, 502
DpnI GATC 5 cut(s) 56, 224, 361, 516, 563
DpnII GATC 5 cut(s) 54, 222, 359, 514, 561
EaeI YGGCCR 2 cut(s) 265, 483
Eam1104I CTCTTC 2 cut(s) 352, 455
EarI CTCTTC 2 cut(s) 352, 455
Eco130I CCWWGG 1 cut(s) 486
Eco24I GRGCYC 1 cut(s) 251
Eco31I GGTCTC 3 cut(s) 349, 491, 575
EcoRII CCWGG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 486
EcoT38I GRGCYC 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 486
FaeI CATG 1 cut(s) 22
FaiI YATR 6 cut(s) 20, 50, 93, 113, 456, 578
FatI CATG 1 cut(s) 18
FbaI TGATCA 1 cut(s) 561
Fnu4HI GCNGC 4 cut(s) 146, 204, 207, 416
FokI GGATG 3 cut(s) 93, 419, 523
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 4 cut(s) 146, 204, 207, 416
FspBI CTAG 3 cut(s) 182, 311, 363
GlaI GCGC 1 cut(s) 73
GluI GCNGC 4 cut(s) 146, 204, 207, 416
GsaI CCCAGC 1 cut(s) 26
HaeIII GGCC 3 cut(s) 191, 267, 485
HapII CCGG 4 cut(s) 84, 172, 585, 626
HgaI GACGC 1 cut(s) 23
HhaI GCGC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 1 cut(s) 22
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HinfI GANTC 3 cut(s) 287, 391, 443
HpaII CCGG 4 cut(s) 84, 172, 585, 626
HphI GGTGA 2 cut(s) 502, 571
Hpy188I TCNGA 2 cut(s) 375, 505
Hpy188III TCNNGA 3 cut(s) 154, 421, 472
Hpy99I CGWCG 1 cut(s) 63
HpyAV CCTTC 2 cut(s) 173, 487
HpyCH4III ACNGT 1 cut(s) 99
HpyCH4V TGCA 5 cut(s) 145, 209, 326, 415, 536
HpyF3I CTNAG 4 cut(s) 138, 186, 306, 502
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 1 cut(s) 22
HspAI GCGC 1 cut(s) 72
Ksp22I TGATCA 1 cut(s) 561
Kzo9I GATC 5 cut(s) 54, 222, 359, 514, 561
LmnI GCTCC 2 cut(s) 103, 254
Lsp1109I GCAGC 4 cut(s) 157, 190, 193, 427
LweI GCATC 6 cut(s) 115, 132, 187, 342, 545, 606
MaeI CTAG 3 cut(s) 182, 311, 363
MalI GATC 5 cut(s) 56, 224, 361, 516, 563
MboI GATC 5 cut(s) 54, 222, 359, 514, 561
MboII GAAGA 3 cut(s) 339, 396, 472
MflI RGATCY 2 cut(s) 359, 514
MhlI GDGCHC 2 cut(s) 251, 637
MlsI TGGCCA 1 cut(s) 485
MluCI AATT 1 cut(s) 38
MluNI TGGCCA 1 cut(s) 485
MlyI GAGTC 2 cut(s) 281, 385
MmeI TCCRAC 2 cut(s) 81, 353
MnlI CCTC 8 cut(s) 22, 456, 505, 511, 538, 550, 583, 604
Mox20I TGGCCA 1 cut(s) 485
MscI TGGCCA 1 cut(s) 485
MslI CAYNNNNRTG 1 cut(s) 338
Msp20I TGGCCA 1 cut(s) 485
MspI CCGG 4 cut(s) 84, 172, 585, 626
MspR9I CCNGG 4 cut(s) 84, 173, 193, 586
MvaI CCWGG 1 cut(s) 193
NciI CCSGG 3 cut(s) 84, 173, 586
NdeII GATC 5 cut(s) 54, 222, 359, 514, 561
NheI GCTAGC 1 cut(s) 310
NlaIII CATG 1 cut(s) 22
NlaIV GGNNCC 2 cut(s) 88, 250
PcsI WCGNNNNNNNCGW 1 cut(s) 606
PfeI GAWTC 1 cut(s) 443
PkrI GCNGC 4 cut(s) 147, 205, 208, 417
PleI GAGTC 2 cut(s) 281, 385
PpsI GAGTC 2 cut(s) 281, 385
Psp6I CCWGG 1 cut(s) 191
PspFI CCCAGC 1 cut(s) 22
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 2 cut(s) 88, 250
PstNI CAGNNNCTG 1 cut(s) 290
PsuI RGATCY 2 cut(s) 359, 514
RsaI GTAC 2 cut(s) 230, 622
RsaNI GTAC 2 cut(s) 229, 621
RseI CAYNNNNRTG 1 cut(s) 338
SatI GCNGC 4 cut(s) 146, 204, 207, 416
Sau3AI GATC 5 cut(s) 54, 222, 359, 514, 561
SchI GAGTC 2 cut(s) 281, 385
ScrFI CCNGG 4 cut(s) 84, 173, 193, 586
SduI GDGCHC 2 cut(s) 251, 637
SfaNI GCATC 6 cut(s) 115, 132, 187, 342, 545, 606
SfcI CTRYAG 1 cut(s) 291
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 2 cut(s) 419, 638
SmoI CTYRAG 2 cut(s) 419, 638
Sse9I AATT 1 cut(s) 38
SspMI CTAG 3 cut(s) 182, 311, 363
StyD4I CCNGG 4 cut(s) 82, 171, 191, 584
StyI CCWWGG 1 cut(s) 486
TaaI ACNGT 1 cut(s) 99
TaqI TCGA 2 cut(s) 398, 600
TaqII GACCGA 1 cut(s) 359
TasI AATT 1 cut(s) 38
TatI WGTACW 1 cut(s) 228
TfiI GAWTC 1 cut(s) 443
TscAI CASTG 1 cut(s) 219
TseI GCWGC 4 cut(s) 145, 203, 206, 415
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 1 cut(s) 219
XspI CTAG 3 cut(s) 182, 311, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.