Rorug04G0026600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000109
Physical Location & Seq
Forward (+)
3669287 .. 3670965
1679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0026600.1

Sequence Viewer

Length: 1293 bp
ATGGGCCGTGGGCCCCCACCACCCCCCTCCGCCGCCTTCACCACCACCACCCTTCTCGGCAAGTACCAACTGGGCCGGCTGCTGGGCCGGGGCAGCTTCGCCAAGGTCTGCAAGGCCCAGTCCTTAGCCGACGAAACCCCCGTCGCCATTAAAATCATCGACAAGCTCAAAGCCGACGCAAATATGGAGCCTCTGATACTCCGGGAGATCTCCGCCATGCGCCGCCTCCAGGACCACCCTAACATCCTCAAAATCCACGAGGTCATGGCCACAAAATCCAAGATCTACATCGTCGTCGAGCTCGCCACCGGCGGCGAGCTCTTCGCCAAGATCTCACGCCACGGCAAGTTGCCGGAATCCCTCGCCCGCCGCTACTTCCAGCAGCTCGTCTCCGCCCTCCGCTTCTGCCACGAAAACGGCGTCTCTCACCGCGACGTGAAGCCGCAGAACCTCCTCCTCGACGGCAACGGAAACCTCAAGGTCTCCGATTTCGGACTCTCCGCCCTGCCGGAGCAGCTCAAAAACGGCCTCCTCCACACGGCCTGCGGGACGCCGGCGTACACGGCTCCGGAGGTTCTGTACCGGGTCGGGTACGACGGATCCAAGGCCGACGCGTGGTCCTGCGGCGTCATCCTCTTCGTCCTCCTCGCCGGACACTTGCCGTTCGACGACAGCAACCTGGTGGCGATGCATAAGAAGATTCAGCGCCGGGATTACGTCATCCCGGCGACGCTTTCGAAGCCGGCGCGGCGGATCATATACCAGCTGCTCGACCCGAACCCGAACACGAGGCTGAGCATAGAGGCCGTCATGGAAAAGGCGTGGTTCCAAAAGGCGATAGATTTGAAGTTACTTTCCGATAGCTGCGATATAATTGAGGCGGAGAAACCAAAATGCGACGTCGTTTCGGGGATGAATGCGTTCGATATAATCTCCATGTCGTCAGGGCTGGATTTGTCGGGGCTTTTTGAGGCGGAGGACAGGAGCGAGAGGCGGTTCACGGCGAATGTGGCGGCGGAGAAGGTGGCGGAGAAGGTGGGGGAGGTTGGGGAGAGGCTGGGGTACAAAGCGGAGAGAGGGAAGGGTGGGATGAGCGTTGGGTTGGGGAAAGGGGGGACAGGGAAAGGACGACGTGTCGTTTTGACGGTGGAAATGATGGAGGTGGCGGAGGGTTTGGTTTTAGGGGAAGTGAAGATGGTGGAGGGTGGAGTTGAGTTTCCGGAGCTGCTTTGGGAGGACTTGAAAACTGGGTTAGGGGACGTTGTGGTGTCATGGCAAAACGGTGGCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

430

Amino Acids

46.85

Weight (kDa)

8.37

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 22 - 276 2.4e-70 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 23 - 272 1.6e-35 Protein tyrosine and serine/threonine kinase
NAF PF03822 305 - 358 3.7e-18 NAF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 903
AccII CGCG 3 cut(s) 432, 614, 748
AccIII TCCGGA 2 cut(s) 568, 1219
AclWI GGATC 3 cut(s) 594, 607, 761
AcoI YGGCCR 1 cut(s) 267
AcyI GRCGYC 4 cut(s) 420, 551, 627, 900
AfaI GTAC 5 cut(s) 65, 560, 581, 593, 1064
AfiI CCNNNNNNNGG 4 cut(s) 82, 229, 538, 615
AflIII ACRYGT 2 cut(s) 612, 1132
AgsI TTSAA 2 cut(s) 847, 1243
AhdI GACNNNNNGTC 2 cut(s) 616, 1133
AjiI CACGTC 2 cut(s) 436, 1133
AjnI CCWGG 2 cut(s) 228, 678
AluBI AGCT 9 cut(s) 96, 166, 301, 319, 385, 517, 766, 864, 1225
AluI AGCT 9 cut(s) 96, 166, 301, 319, 385, 517, 766, 864, 1225
Alw21I GWGCWC 2 cut(s) 303, 321
Alw26I GTCTC 3 cut(s) 394, 427, 487
AlwI GGATC 3 cut(s) 594, 607, 761
Aor13HI TCCGGA 2 cut(s) 568, 1219
ApaI GGGCCC 1 cut(s) 15
ApeKI GCWGC 7 cut(s) 79, 93, 382, 514, 766, 864, 1225
ArsI GACNNNNNNTTYG 4 cut(s) 126, 158, 405, 437
Asp700I GAANNNNTTC 1 cut(s) 920
AspLEI GCGC 3 cut(s) 222, 708, 748
AspS9I GGNCC 8 cut(s) 4, 11, 12, 73, 85, 115, 232, 618
AsuC2I CCSGG 5 cut(s) 89, 203, 584, 710, 725
AsuHPI GGTGA 2 cut(s) 31, 419
AsuII TTCGAA 1 cut(s) 737
AvaII GGWCC 2 cut(s) 232, 618
BaeGI GKGCMC 1 cut(s) 15
BalI TGGCCA 1 cut(s) 269
BamHI GGATCC 1 cut(s) 599
BanII GRGCYC 3 cut(s) 15, 303, 321
BauI CACGAG 2 cut(s) 257, 787
Bbv12I GWGCWC 2 cut(s) 303, 321
BbvI GCAGC 7 cut(s) 66, 105, 394, 526, 753, 851, 1212
BccI CCATC 2 cut(s) 1150, 1189
BceAI ACGGC 9 cut(s) 358, 433, 478, 541, 555, 579, 646, 791, 1017
BciT130I CCWGG 2 cut(s) 230, 680
BcnI CCSGG 5 cut(s) 89, 203, 584, 710, 725
BcoDI GTCTC 3 cut(s) 394, 427, 487
BfoI RGCGCY 1 cut(s) 709
BglI GCCNNNNNGGC 1 cut(s) 748
BglII AGATCT 3 cut(s) 207, 282, 330
BlpI GCTNAGC 1 cut(s) 794
Bme1390I CCNGG 7 cut(s) 89, 203, 230, 584, 680, 710, 725
Bme18I GGWCC 2 cut(s) 232, 618
BmeRI GACNNNNNGTC 2 cut(s) 616, 1133
BmgBI CACGTC 2 cut(s) 436, 1133
BmgT120I GGNCC 8 cut(s) 4, 11, 12, 73, 85, 115, 232, 618
BmiI GGNNCC 6 cut(s) 13, 14, 189, 567, 601, 827
BmrFI CCNGG 7 cut(s) 89, 203, 230, 584, 680, 710, 725
BmrI ACTGGG 3 cut(s) 80, 112, 1257
BmsI GCATC 1 cut(s) 678
BmuI ACTGGG 3 cut(s) 80, 112, 1257
BpmI CTGGAG 1 cut(s) 212
Bpu10I CCTNAGC 1 cut(s) 124
Bpu1102I GCTNAGC 1 cut(s) 794
Bpu14I TTCGAA 1 cut(s) 737
BpuEI CTTGAG 1 cut(s) 461
BpuMI CCSGG 5 cut(s) 89, 203, 584, 710, 725
BsaBI GATNNNNATC 1 cut(s) 287
BsaHI GRCGYC 4 cut(s) 420, 551, 627, 900
BsaI GGTCTC 1 cut(s) 487
BsaJI CCNNGG 5 cut(s) 7, 88, 102, 340, 603
BsaWI WCCGGW 2 cut(s) 568, 1219
BsaXI ACNNNNNCTCC 2 cut(s) 563, 593
Bsc4I CCNNNNNNNGG 4 cut(s) 82, 229, 538, 615
Bse118I RCCGGY 4 cut(s) 75, 308, 553, 742
Bse1I ACTGG 3 cut(s) 75, 118, 1252
Bse8I GATNNNNATC 1 cut(s) 287
BseAI TCCGGA 2 cut(s) 568, 1219
BseBI CCWGG 2 cut(s) 230, 680
BseDI CCNNGG 5 cut(s) 7, 88, 102, 340, 603
BseGI GGATG 5 cut(s) 243, 630, 720, 918, 1095
BseJI GATNNNNATC 1 cut(s) 287
BseLI CCNNNNNNNGG 4 cut(s) 82, 229, 538, 615
BseMII CTCAG 1 cut(s) 785
BseNI ACTGG 3 cut(s) 75, 118, 1252
BseRI GAGGAG 4 cut(s) 443, 446, 521, 635
BseSI GKGCMC 1 cut(s) 15
BseXI GCAGC 7 cut(s) 66, 105, 394, 526, 753, 851, 1212
BseYI CCCAGC 2 cut(s) 82, 1057
Bsh1236I CGCG 3 cut(s) 432, 614, 748
BsiHKAI GWGCWC 2 cut(s) 303, 321
BslFI GGGAC 3 cut(s) 562, 1129, 1271
BslI CCNNNNNNNGG 4 cut(s) 82, 229, 538, 615
BsmAI GTCTC 3 cut(s) 394, 427, 487
BsmBI CGTCTC 2 cut(s) 394, 427
BsmFI GGGAC 3 cut(s) 562, 1129, 1271
BsmI GAATGC 1 cut(s) 922
Bso31I GGTCTC 1 cut(s) 487
Bsp119I TTCGAA 1 cut(s) 737
Bsp120I GGGCCC 1 cut(s) 11
Bsp1286I GDGCHC 3 cut(s) 15, 303, 321
Bsp13I TCCGGA 2 cut(s) 568, 1219
Bsp143I GATC 5 cut(s) 207, 282, 330, 599, 753
Bsp1720I GCTNAGC 1 cut(s) 794
BspCNI CTCAG 1 cut(s) 786
BspEI TCCGGA 2 cut(s) 568, 1219
BspFNI CGCG 3 cut(s) 432, 614, 748
BspLI GGNNCC 6 cut(s) 13, 14, 189, 567, 601, 827
BspPI GGATC 3 cut(s) 594, 607, 761
BspQI GCTCTTC 1 cut(s) 326
BspT104I TTCGAA 1 cut(s) 737
BspTNI GGTCTC 1 cut(s) 487
BsrFI RCCGGY 4 cut(s) 75, 308, 553, 742
BsrI ACTGG 3 cut(s) 75, 118, 1252
BssAI RCCGGY 4 cut(s) 75, 308, 553, 742
BssECI CCNNGG 5 cut(s) 7, 88, 102, 340, 603
BssMI GATC 5 cut(s) 207, 282, 330, 599, 753
BssNI GRCGYC 4 cut(s) 420, 551, 627, 900
BssSI CACGAG 2 cut(s) 257, 787
BssT1I CCWWGG 2 cut(s) 102, 603
Bst2BI CACGAG 2 cut(s) 257, 787
Bst2UI CCWGG 2 cut(s) 230, 680
Bst4CI ACNGT 2 cut(s) 1147, 1283
Bst6I CTCTTC 2 cut(s) 326, 641
BstACI GRCGYC 4 cut(s) 420, 551, 627, 900
BstBI TTCGAA 1 cut(s) 737
BstC8I GCNNGC 7 cut(s) 77, 303, 317, 367, 544, 555, 744
BstDEI CTNAG 2 cut(s) 124, 794
BstDSI CCRYGG 2 cut(s) 7, 340
BstF5I GGATG 5 cut(s) 243, 630, 720, 918, 1095
BstFNI CGCG 3 cut(s) 432, 614, 748
BstH2I RGCGCY 1 cut(s) 709
BstHHI GCGC 3 cut(s) 222, 708, 748
BstKTI GATC 5 cut(s) 210, 285, 333, 602, 756
BstMAI GTCTC 3 cut(s) 394, 427, 487
BstMBI GATC 5 cut(s) 207, 282, 330, 599, 753
BstMWI GCNNNNNNNGC 6 cut(s) 93, 514, 563, 739, 748, 1010
BstNI CCWGG 2 cut(s) 230, 680
BstSCI CCNGG 7 cut(s) 87, 201, 228, 582, 678, 708, 723
BstSLI GKGCMC 1 cut(s) 15
BstUI CGCG 3 cut(s) 432, 614, 748
BstV1I GCAGC 7 cut(s) 66, 105, 394, 526, 753, 851, 1212
BstX2I RGATCY 4 cut(s) 207, 282, 330, 599
BstYI RGATCY 4 cut(s) 207, 282, 330, 599
BtgI CCRYGG 2 cut(s) 7, 340
BtgZI GCGATG 1 cut(s) 701
BtrI CACGTC 2 cut(s) 436, 1133
BtsCI GGATG 5 cut(s) 243, 630, 720, 918, 1095
Cac8I GCNNGC 7 cut(s) 77, 303, 317, 367, 544, 555, 744
CfoI GCGC 3 cut(s) 222, 708, 748
Cfr10I RCCGGY 4 cut(s) 75, 308, 553, 742
Cfr13I GGNCC 8 cut(s) 4, 11, 12, 73, 85, 115, 232, 618
CseI GACGC 6 cut(s) 185, 409, 559, 616, 620, 739
CsiI ACCWGGT 1 cut(s) 678
Csp6I GTAC 5 cut(s) 64, 559, 580, 592, 1063
CviAII CATG 5 cut(s) 217, 265, 811, 937, 1272
CviQI GTAC 5 cut(s) 64, 559, 580, 592, 1063
DdeI CTNAG 2 cut(s) 124, 794
DpnI GATC 5 cut(s) 209, 284, 332, 601, 755
DpnII GATC 5 cut(s) 207, 282, 330, 599, 753
DriI GACNNNNNGTC 2 cut(s) 616, 1133
EaeI YGGCCR 1 cut(s) 267
Eam1104I CTCTTC 2 cut(s) 326, 641
Eam1105I GACNNNNNGTC 2 cut(s) 616, 1133
EarI CTCTTC 2 cut(s) 326, 641
Ecl136II GAGCTC 2 cut(s) 301, 319
Eco130I CCWWGG 2 cut(s) 102, 603
Eco24I GRGCYC 3 cut(s) 15, 303, 321
Eco31I GGTCTC 1 cut(s) 487
Eco47I GGWCC 2 cut(s) 232, 618
Eco53kI GAGCTC 2 cut(s) 301, 319
EcoICRI GAGCTC 2 cut(s) 301, 319
EcoO109I RGGNCCY 1 cut(s) 12
EcoRII CCWGG 2 cut(s) 228, 678
EcoT14I CCWWGG 2 cut(s) 102, 603
EcoT22I ATGCAT 1 cut(s) 693
EcoT38I GRGCYC 3 cut(s) 15, 303, 321
ErhI CCWWGG 2 cut(s) 102, 603
Esp3I CGTCTC 2 cut(s) 394, 427
FaeI CATG 5 cut(s) 220, 268, 814, 940, 1275
FaqI GGGAC 3 cut(s) 562, 1129, 1271
FatI CATG 5 cut(s) 216, 264, 810, 936, 1271
FauI CCCGC 2 cut(s) 374, 539
FokI GGATG 5 cut(s) 230, 617, 707, 925, 1102
FriOI GRGCYC 3 cut(s) 15, 303, 321
GlaI GCGC 3 cut(s) 221, 707, 747
GsaI CCCAGC 2 cut(s) 86, 1061
GsuI CTGGAG 1 cut(s) 212
HaeII RGCGCY 1 cut(s) 709
HgaI GACGC 6 cut(s) 185, 409, 559, 616, 620, 739
HhaI GCGC 3 cut(s) 222, 708, 748
Hin1I GRCGYC 4 cut(s) 420, 551, 627, 900
Hin1II CATG 5 cut(s) 220, 268, 814, 940, 1275
Hin6I GCGC 3 cut(s) 220, 706, 746
HinP1I GCGC 3 cut(s) 220, 706, 746
HinfI GANTC 3 cut(s) 356, 495, 700
HphI GGTGA 2 cut(s) 31, 419
Hpy166II GTNNAC 2 cut(s) 561, 999
Hpy188I TCNGA 4 cut(s) 195, 487, 494, 859
Hpy188III TCNNGA 2 cut(s) 569, 1220
Hpy8I GTNNAC 2 cut(s) 561, 999
HpyAV CCTTC 5 cut(s) 46, 62, 1015, 1027, 1075
HpyCH4III ACNGT 2 cut(s) 1147, 1283
HpyCH4IV ACGT 5 cut(s) 435, 717, 900, 1132, 1260
HpyCH4V TGCA 2 cut(s) 111, 691
HpyF10VI GCNNNNNNNGC 6 cut(s) 93, 514, 563, 739, 748, 1010
HpyF3I CTNAG 2 cut(s) 124, 794
HpySE526I ACGT 5 cut(s) 435, 717, 900, 1132, 1260
Hsp92I GRCGYC 4 cut(s) 420, 551, 627, 900
Hsp92II CATG 5 cut(s) 220, 268, 814, 940, 1275
HspAI GCGC 3 cut(s) 220, 706, 746
Kpn2I TCCGGA 2 cut(s) 568, 1219
KroI GCCGGC 3 cut(s) 75, 553, 742
KroNI GCCGGC 3 cut(s) 77, 555, 744
Kzo9I GATC 5 cut(s) 207, 282, 330, 599, 753
LguI GCTCTTC 1 cut(s) 326
LmnI GCTCC 5 cut(s) 187, 511, 571, 984, 1222
Lsp1109I GCAGC 7 cut(s) 66, 105, 394, 526, 753, 851, 1212
LweI GCATC 1 cut(s) 678
MabI ACCWGGT 1 cut(s) 678
MaeII ACGT 5 cut(s) 435, 717, 900, 1132, 1260
MaeIII GTNAC 1 cut(s) 849
MalI GATC 5 cut(s) 209, 284, 332, 601, 755
MboI GATC 5 cut(s) 207, 282, 330, 599, 753
MboII GAAGA 4 cut(s) 313, 628, 709, 1204
MflI RGATCY 4 cut(s) 207, 282, 330, 599
MhlI GDGCHC 3 cut(s) 15, 303, 321
MlsI TGGCCA 1 cut(s) 269
MluCI AATT 1 cut(s) 873
MluI ACGCGT 1 cut(s) 612
MluNI TGGCCA 1 cut(s) 269
MlyI GAGTC 1 cut(s) 489
Mox20I TGGCCA 1 cut(s) 269
Mph1103I ATGCAT 1 cut(s) 693
MreI CGCCGGCG 1 cut(s) 553
MroI TCCGGA 2 cut(s) 568, 1219
MroNI GCCGGC 3 cut(s) 75, 553, 742
MroXI GAANNNNTTC 1 cut(s) 920
MscI TGGCCA 1 cut(s) 269
MseI TTAA 2 cut(s) 150, 1291
Msp20I TGGCCA 1 cut(s) 269
MspA1I CMGCKG 1 cut(s) 766
MspR9I CCNGG 7 cut(s) 89, 203, 230, 584, 680, 710, 725
Mva1269I GAATGC 1 cut(s) 922
MvaI CCWGG 2 cut(s) 230, 680
MvnI CGCG 3 cut(s) 432, 614, 748
MwoI GCNNNNNNNGC 6 cut(s) 93, 514, 563, 739, 748, 1010
NaeI GCCGGC 3 cut(s) 77, 555, 744
NciI CCSGG 5 cut(s) 89, 203, 584, 710, 725
NdeII GATC 5 cut(s) 207, 282, 330, 599, 753
NgoMIV GCCGGC 3 cut(s) 75, 553, 742
NlaIII CATG 5 cut(s) 220, 268, 814, 940, 1275
NlaIV GGNNCC 6 cut(s) 13, 14, 189, 567, 601, 827
NmeAIII GCCGAG 1 cut(s) 36
NsiI ATGCAT 1 cut(s) 693
NspV TTCGAA 1 cut(s) 737
PciSI GCTCTTC 1 cut(s) 326
PcsI WCGNNNNNNNCGW 2 cut(s) 138, 417
PctI GAATGC 1 cut(s) 922
PdiI GCCGGC 3 cut(s) 77, 555, 744
PdmI GAANNNNTTC 1 cut(s) 920
PfeI GAWTC 2 cut(s) 356, 700
PfoI TCCNGGA 2 cut(s) 201, 228
PleI GAGTC 1 cut(s) 489
PpsI GAGTC 1 cut(s) 489
Psp124BI GAGCTC 2 cut(s) 303, 321
Psp6I CCWGG 2 cut(s) 228, 678
PspFI CCCAGC 2 cut(s) 82, 1057
PspGI CCWGG 2 cut(s) 228, 678
PspN4I GGNNCC 6 cut(s) 13, 14, 189, 567, 601, 827
PspOMI GGGCCC 1 cut(s) 11
PspPI GGNCC 8 cut(s) 4, 11, 12, 73, 85, 115, 232, 618
PsuI RGATCY 4 cut(s) 207, 282, 330, 599
PvuII CAGCTG 1 cut(s) 766
RsaI GTAC 5 cut(s) 65, 560, 581, 593, 1064
RsaNI GTAC 5 cut(s) 64, 559, 580, 592, 1063
SacI GAGCTC 2 cut(s) 303, 321
SapI GCTCTTC 1 cut(s) 326
SaqAI TTAA 2 cut(s) 150, 1291
Sau3AI GATC 5 cut(s) 207, 282, 330, 599, 753
Sau96I GGNCC 8 cut(s) 4, 11, 12, 73, 85, 115, 232, 618
SchI GAGTC 1 cut(s) 489
ScrFI CCNGG 7 cut(s) 89, 203, 230, 584, 680, 710, 725
SduI GDGCHC 3 cut(s) 15, 303, 321
SexAI ACCWGGT 1 cut(s) 678
SfaNI GCATC 1 cut(s) 678
SfuI TTCGAA 1 cut(s) 737
SgrAI CRCCGGYG 2 cut(s) 308, 553
SinI GGWCC 2 cut(s) 232, 618
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
Sse9I AATT 1 cut(s) 873
SstI GAGCTC 2 cut(s) 303, 321
StyD4I CCNGG 7 cut(s) 87, 201, 228, 582, 678, 708, 723
StyI CCWWGG 2 cut(s) 102, 603
TaaI ACNGT 2 cut(s) 1147, 1283
TaiI ACGT 5 cut(s) 438, 720, 903, 1135, 1263
TaqI TCGA 7 cut(s) 159, 297, 459, 666, 737, 771, 924
TasI AATT 1 cut(s) 873
TauI GCSGC 8 cut(s) 35, 225, 315, 372, 445, 627, 751, 1016
TfiI GAWTC 2 cut(s) 356, 700
Tru1I TTAA 2 cut(s) 150, 1291
Tru9I TTAA 2 cut(s) 150, 1291
TseI GCWGC 7 cut(s) 79, 93, 382, 514, 766, 864, 1225
TspDTI ATGAA 1 cut(s) 929
TspGWI ACGGA 2 cut(s) 483, 612
VpaK11BI GGWCC 2 cut(s) 232, 618
XmnI GAANNNNTTC 1 cut(s) 920
ZraI GACGTC 1 cut(s) 901
Zsp2I ATGCAT 1 cut(s) 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.