RchiOBHm_Chr7g0182191

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000109
Physical Location & Seq
Forward (+)
3543182 .. 3544110
929 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16252

Sequence Viewer

Length: 705 bp
ATGTTGTTTGTCTCCCTGTTTCGTCTTCTCCTTGGTCTGTTCCTCAACACCCAAACCCCCAAATTTCCAGATTTCTTCTTCTTCCTCTTAAACCGGTTGCTGTCCCTGTGGGTCGCCTTCTCCGGCGGCCCTTATCCTTTTCCTTCTGCCCTGATCTGTAAATATGCTCTTTGGAGCTCTGTTCTAAACGGGGTTTGCCCGTTAGTGCACCGGGTGATGCAACAAGGGTCTGAACATCCTCTGGATGCCTGTCCCTTAGATCCCTTTGTGGATCCTCTCACCTCCCTCTCTCTTCAACTAGTTTTTCTGGTTGATCTATTGGCAGAAGATGTTCTCCGATTCGGAGATGGTTTGGGAATTGGGTTTCTTGTCTTTGAATCTGGATTGCTGTTGGTTCGGTGTTTGATCAGAACTACGATGGGTCTGCCTGGTTTAGGCCCTTTTGTCTTTATTTCTCTTGCTCCGTGGATCTGGTCTTGCCTCCTGCTGTTATCGGCGTGTACCTTTGGGTCGATTGGCTGGCTCAGCTACCTTCTCCTGCGAGGTTGTGTCCCTCTTCTGACGGCGTCAACCAACATGGAGGCTTCTGGGCTAGACTTTGTTCATGGAGTGGGCTGTGTTCTTATCTTGTTGTATTTGTTGTTTTTAGTTTTCTGTATTTCGGCCCTTTTTTGGCCTTCTGTTGTACTGATCCTTTTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

25.85

Weight (kDa)

5.44

Isoelectric Point (pI)

34.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 126
AclWI GGATC 5 cut(s) 254, 266, 279, 476, 685
AcsI RAATTY 1 cut(s) 62
AcyI GRCGYC 1 cut(s) 566
AdeI CACNNNGTG 1 cut(s) 214
AfaI GTAC 2 cut(s) 502, 687
AfiI CCNNNNNNNGG 2 cut(s) 434, 672
AgeI ACCGGT 1 cut(s) 93
AgsI TTSAA 2 cut(s) 296, 377
AhlI ACTAGT 1 cut(s) 298
AjnI CCWGG 1 cut(s) 427
AluBI AGCT 2 cut(s) 177, 528
AluI AGCT 2 cut(s) 177, 528
Alw21I GWGCWC 2 cut(s) 179, 210
Alw26I GTCTC 1 cut(s) 16
Alw44I GTGCAC 1 cut(s) 206
AlwI GGATC 5 cut(s) 254, 266, 279, 476, 685
AoxI GGCC 4 cut(s) 127, 436, 663, 674
ApaLI GTGCAC 1 cut(s) 206
ApoI RAATTY 1 cut(s) 62
AsiGI ACCGGT 1 cut(s) 93
Asp700I GAANNNNTTC 1 cut(s) 330
AspS9I GGNCC 3 cut(s) 128, 437, 664
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 2 cut(s) 226, 271
BaeGI GKGCMC 1 cut(s) 210
BamHI GGATCC 1 cut(s) 271
BanII GRGCYC 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 17
Bbv12I GWGCWC 2 cut(s) 179, 210
BccI CCATC 2 cut(s) 341, 412
BceAI ACGGC 1 cut(s) 579
BcgI CGANNNNNNTGC 2 cut(s) 406, 440
BciT130I CCWGG 1 cut(s) 429
BclI TGATCA 1 cut(s) 405
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 16
BcuI ACTAGT 1 cut(s) 298
BfaI CTAG 2 cut(s) 299, 593
BisI GCNGC 1 cut(s) 127
BlpI GCTNAGC 1 cut(s) 524
BlsI GCNGC 1 cut(s) 128
Bme1390I CCNGG 2 cut(s) 212, 429
BmgT120I GGNCC 3 cut(s) 128, 437, 664
BmiI GGNNCC 1 cut(s) 273
BmrFI CCNGG 2 cut(s) 212, 429
BmsI GCATC 2 cut(s) 207, 235
BpiI GAAGAC 1 cut(s) 17
Bpu1102I GCTNAGC 1 cut(s) 524
BpuMI CCSGG 1 cut(s) 212
BsaHI GRCGYC 1 cut(s) 566
BsaJI CCNNGG 2 cut(s) 31, 464
BsaWI WCCGGW 1 cut(s) 93
Bsc4I CCNNNNNNNGG 2 cut(s) 434, 672
Bse118I RCCGGY 1 cut(s) 93
BseBI CCWGG 1 cut(s) 429
BseDI CCNNGG 2 cut(s) 31, 464
BseGI GGATG 2 cut(s) 235, 250
BseLI CCNNNNNNNGG 2 cut(s) 434, 672
BseMII CTCAG 1 cut(s) 538
BseSI GKGCMC 1 cut(s) 210
BshFI GGCC 4 cut(s) 129, 438, 665, 676
BshTI ACCGGT 1 cut(s) 93
BsiHKAI GWGCWC 2 cut(s) 179, 210
BsiSI CCGG 3 cut(s) 94, 123, 211
BslFI GGGAC 3 cut(s) 88, 237, 536
BslI CCNNNNNNNGG 2 cut(s) 434, 672
BsmAI GTCTC 1 cut(s) 16
BsmFI GGGAC 3 cut(s) 88, 237, 536
BsnI GGCC 4 cut(s) 129, 438, 665, 676
Bsp1286I GDGCHC 2 cut(s) 179, 210
Bsp143I GATC 7 cut(s) 153, 259, 271, 313, 405, 468, 690
Bsp1720I GCTNAGC 1 cut(s) 524
BspACI CCGC 1 cut(s) 126
BspANI GGCC 4 cut(s) 129, 438, 665, 676
BspCNI CTCAG 1 cut(s) 537
BspLI GGNNCC 1 cut(s) 273
BspPI GGATC 5 cut(s) 254, 266, 279, 476, 685
BsrFI RCCGGY 1 cut(s) 93
BssAI RCCGGY 1 cut(s) 93
BssECI CCNNGG 2 cut(s) 31, 464
BssMI GATC 7 cut(s) 153, 259, 271, 313, 405, 468, 690
BssNI GRCGYC 1 cut(s) 566
BssT1I CCWWGG 1 cut(s) 31
Bst2UI CCWGG 1 cut(s) 429
Bst6I CTCTTC 2 cut(s) 297, 561
BstACI GRCGYC 1 cut(s) 566
BstC8I GCNNGC 1 cut(s) 521
BstDEI CTNAG 2 cut(s) 256, 524
BstDSI CCRYGG 1 cut(s) 464
BstENI CCTNNNNNAGG 1 cut(s) 432
BstF5I GGATG 2 cut(s) 235, 250
BstKTI GATC 7 cut(s) 156, 262, 274, 316, 408, 471, 693
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 7 cut(s) 153, 259, 271, 313, 405, 468, 690
BstMWI GCNNNNNNNGC 1 cut(s) 525
BstNI CCWGG 1 cut(s) 429
BstSCI CCNGG 2 cut(s) 210, 427
BstSLI GKGCMC 1 cut(s) 210
BstV2I GAAGAC 1 cut(s) 17
BstX2I RGATCY 3 cut(s) 259, 271, 468
BstYI RGATCY 3 cut(s) 259, 271, 468
BsuRI GGCC 4 cut(s) 129, 438, 665, 676
BtgI CCRYGG 1 cut(s) 464
BtsCI GGATG 2 cut(s) 235, 250
Cac8I GCNNGC 1 cut(s) 521
Cfr10I RCCGGY 1 cut(s) 93
Cfr13I GGNCC 3 cut(s) 128, 437, 664
CseI GACGC 1 cut(s) 555
Csp6I GTAC 2 cut(s) 501, 686
CspAI ACCGGT 1 cut(s) 93
CviAII CATG 2 cut(s) 577, 605
CviQI GTAC 2 cut(s) 501, 686
DdeI CTNAG 2 cut(s) 256, 524
DpnI GATC 7 cut(s) 155, 261, 273, 315, 407, 470, 692
DpnII GATC 7 cut(s) 153, 259, 271, 313, 405, 468, 690
DraIII CACNNNGTG 1 cut(s) 214
Eam1104I CTCTTC 2 cut(s) 297, 561
EarI CTCTTC 2 cut(s) 297, 561
Ecl136II GAGCTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 179
Eco53kI GAGCTC 1 cut(s) 177
EcoICRI GAGCTC 1 cut(s) 177
EcoNI CCTNNNNNAGG 1 cut(s) 432
EcoO109I RGGNCCY 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 2 cut(s) 580, 608
FaiI YATR 3 cut(s) 165, 578, 606
FaqI GGGAC 3 cut(s) 88, 237, 536
FatI CATG 2 cut(s) 576, 604
FbaI TGATCA 1 cut(s) 405
Fnu4HI GCNGC 1 cut(s) 127
FokI GGATG 2 cut(s) 222, 257
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 127
FspBI CTAG 2 cut(s) 299, 593
GluI GCNGC 1 cut(s) 127
HaeIII GGCC 4 cut(s) 129, 438, 665, 676
HapII CCGG 3 cut(s) 94, 123, 211
HgaI GACGC 1 cut(s) 555
Hin1I GRCGYC 1 cut(s) 566
Hin1II CATG 2 cut(s) 580, 608
HincII GTYRAC 1 cut(s) 570
HindII GTYRAC 1 cut(s) 570
HinfI GANTC 2 cut(s) 339, 377
HpaII CCGG 3 cut(s) 94, 123, 211
HphI GGTGA 2 cut(s) 226, 271
Hpy166II GTNNAC 3 cut(s) 208, 501, 570
Hpy188I TCNGA 5 cut(s) 232, 338, 344, 410, 561
Hpy188III TCNNGA 3 cut(s) 68, 242, 381
Hpy8I GTNNAC 3 cut(s) 208, 501, 570
HpyAV CCTTC 4 cut(s) 127, 153, 542, 687
HpyCH4V TGCA 2 cut(s) 208, 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 525
HpyF3I CTNAG 2 cut(s) 256, 524
Hsp92I GRCGYC 1 cut(s) 566
Hsp92II CATG 2 cut(s) 580, 608
Ksp22I TGATCA 1 cut(s) 405
Kzo9I GATC 7 cut(s) 153, 259, 271, 313, 405, 468, 690
LmnI GCTCC 2 cut(s) 174, 466
LweI GCATC 2 cut(s) 207, 235
MaeI CTAG 2 cut(s) 299, 593
MalI GATC 7 cut(s) 155, 261, 273, 315, 407, 470, 692
MboI GATC 7 cut(s) 153, 259, 271, 313, 405, 468, 690
MboII GAAGA 7 cut(s) 17, 67, 70, 73, 284, 338, 548
MflI RGATCY 3 cut(s) 259, 271, 468
MhlI GDGCHC 2 cut(s) 179, 210
MluCI AATT 2 cut(s) 62, 357
MroXI GAANNNNTTC 1 cut(s) 330
MseI TTAA 2 cut(s) 89, 703
MspI CCGG 3 cut(s) 94, 123, 211
MspR9I CCNGG 2 cut(s) 212, 429
MvaI CCWGG 1 cut(s) 429
MwoI GCNNNNNNNGC 1 cut(s) 525
NciI CCSGG 1 cut(s) 212
NdeII GATC 7 cut(s) 153, 259, 271, 313, 405, 468, 690
NlaIII CATG 2 cut(s) 580, 608
NlaIV GGNNCC 1 cut(s) 273
PdmI GAANNNNTTC 1 cut(s) 330
PfeI GAWTC 2 cut(s) 339, 377
PflFI GACNNNGTC 1 cut(s) 565
PinAI ACCGGT 1 cut(s) 93
PkrI GCNGC 1 cut(s) 128
Psp124BI GAGCTC 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 427
PspN4I GGNNCC 1 cut(s) 273
PspPI GGNCC 3 cut(s) 128, 437, 664
PsuI RGATCY 3 cut(s) 259, 271, 468
PsyI GACNNNGTC 1 cut(s) 565
RsaI GTAC 2 cut(s) 502, 687
RsaNI GTAC 2 cut(s) 501, 686
SacI GAGCTC 1 cut(s) 179
SaqAI TTAA 2 cut(s) 89, 703
SatI GCNGC 1 cut(s) 127
Sau3AI GATC 7 cut(s) 153, 259, 271, 313, 405, 468, 690
Sau96I GGNCC 3 cut(s) 128, 437, 664
ScrFI CCNGG 2 cut(s) 212, 429
SduI GDGCHC 2 cut(s) 179, 210
SetI ASST 6 cut(s) 179, 284, 506, 530, 534, 547
SfaNI GCATC 2 cut(s) 207, 235
SpeI ACTAGT 1 cut(s) 298
Sse9I AATT 2 cut(s) 62, 357
SsiI CCGC 1 cut(s) 126
SspMI CTAG 2 cut(s) 299, 593
SstI GAGCTC 1 cut(s) 179
StyD4I CCNGG 2 cut(s) 210, 427
StyI CCWWGG 1 cut(s) 31
TaqI TCGA 1 cut(s) 512
TasI AATT 2 cut(s) 62, 357
TatI WGTACW 1 cut(s) 685
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 2 cut(s) 339, 377
Tru1I TTAA 2 cut(s) 89, 703
Tru9I TTAA 2 cut(s) 89, 703
TspDTI ATGAA 1 cut(s) 593
TspGWI ACGGA 1 cut(s) 453
Tth111I GACNNNGTC 1 cut(s) 565
VneI GTGCAC 1 cut(s) 206
XagI CCTNNNNNAGG 1 cut(s) 432
XapI RAATTY 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 330
XspI CTAG 2 cut(s) 299, 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.