Rh7AG462000

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000109
Physical Location & Seq
Reverse (-)
63637378 .. 63638426
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG462000.1

Sequence Viewer

Length: 732 bp
ATGGTGGAGGAGGTCTCAGCCTGTATGGCTGCTGCACTCGCAATCAAGGAGAATGGGAGGGTGTCCTTTGGGACTGCGGCCTCGTCGGCGATCTCTAGCCATTCCTATGCCATTGGGAGGCTTTTGTCTCAGAAGAAGAACTTTGACTCACATCCTTTTATGGCTACCATGGCCAATGTGTGGGGGTTGAAACAGCGACTCTGTATCTGGAATCAAGGCCATCGTTTCATTTTGCGTTTTACGAAGACGGAGGAACGAGACAAGATCTTGTTCGGAGGGCCGTGGTTCTACAGTCGCTCTATGTTTGCTTTGGCCGTGTATGACGGCTGCTGTGAGGCTGAGTCGGTGCCCATCCCAGCGATCCCGGTCTGGGTGGAAGTACTTGGCCTTCCTCTAATACTGATGACTATTGAAGTTGTCTCCATGATCGGTGCTTCTCTGGGTCAAGTCCTTCAGTTGGACAAAGCGAATATTCACATTCGCCGTGACTTGAAGGCTAGGGCCACTGCAGGTTTGTCTATGAGCAGTAGCGTGGCCACTCCTACTGTCAAGCCCTCCCATTCTGGTTTGTCTCTCTCTACACCCGGCCACACTACAAAGGAGCTAGCTAAGCAAGTGGCGCTCCCGATTATCCCTTCCCCACGCCGGCAACTGGTGGAGAAACCTGTGGCCGATGGGACTAAAAGGAAGGCTGAGGCTCAGGAATTGGTGACGTACAGTAAGAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

243

Amino Acids

26.45

Weight (kDa)

9.61

Isoelectric Point (pI)

52.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 54 - 107 1.1e-08 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 500
AccB1I GGYRCC 1 cut(s) 346
AccB7I CCANNNNNTGG 1 cut(s) 180
AciI CCGC 1 cut(s) 77
AclWI GGATC 1 cut(s) 355
AcoI YGGCCR 5 cut(s) 171, 312, 534, 586, 669
AcuI CTGAAG 1 cut(s) 437
AfaI GTAC 2 cut(s) 381, 716
AfiI CCNNNNNNNGG 6 cut(s) 117, 180, 370, 457, 645, 652
AgsI TTSAA 3 cut(s) 190, 413, 493
AluBI AGCT 3 cut(s) 604, 608, 728
AluI AGCT 3 cut(s) 604, 608, 728
Alw26I GTCTC 5 cut(s) 19, 132, 252, 424, 576
AlwI GGATC 1 cut(s) 355
ApeKI GCWGC 3 cut(s) 29, 32, 327
AspLEI GCGC 1 cut(s) 622
AspS9I GGNCC 2 cut(s) 278, 501
AsuC2I CCSGG 2 cut(s) 365, 585
AsuHPI GGTGA 1 cut(s) 721
AsuNHI GCTAGC 1 cut(s) 604
BaeGI GKGCMC 1 cut(s) 351
BalI TGGCCA 2 cut(s) 173, 536
BanI GGYRCC 1 cut(s) 346
BarI GAAGNNNNNNTAC 2 cut(s) 372, 404
BbsI GAAGAC 1 cut(s) 251
BbvCI CCTCAGC 1 cut(s) 693
BbvI GCAGC 3 cut(s) 16, 19, 314
BccI CCATC 3 cut(s) 228, 359, 668
BceAI ACGGC 4 cut(s) 265, 299, 340, 468
BcnI CCSGG 2 cut(s) 365, 585
BcoDI GTCTC 5 cut(s) 19, 132, 252, 424, 576
BfaI CTAG 3 cut(s) 96, 498, 605
BfmI CTRYAG 2 cut(s) 289, 507
BfoI RGCGCY 1 cut(s) 623
BfuAI ACCTGC 1 cut(s) 500
BglI GCCNNNNNGGC 2 cut(s) 26, 86
BglII AGATCT 1 cut(s) 264
BisI GCNGC 4 cut(s) 30, 33, 78, 328
BlpI GCTNAGC 1 cut(s) 609
BlsI GCNGC 4 cut(s) 31, 34, 79, 329
BmcAI AGTACT 1 cut(s) 381
Bme1390I CCNGG 2 cut(s) 365, 585
BmgT120I GGNCC 2 cut(s) 278, 501
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 2 cut(s) 365, 585
BmtI GCTAGC 1 cut(s) 608
BpiI GAAGAC 1 cut(s) 251
BplI GAGNNNNNCTC 1 cut(s) 31
Bpu10I CCTNAGC 2 cut(s) 693, 699
Bpu1102I GCTNAGC 1 cut(s) 609
BpuMI CCSGG 2 cut(s) 365, 585
BsaI GGTCTC 1 cut(s) 19
BsaJI CCNNGG 2 cut(s) 168, 281
Bsc4I CCNNNNNNNGG 6 cut(s) 117, 180, 370, 457, 645, 652
Bse118I RCCGGY 1 cut(s) 645
Bse1I ACTGG 1 cut(s) 657
BseDI CCNNGG 2 cut(s) 168, 281
BseGI GGATG 2 cut(s) 151, 351
BseLI CCNNNNNNNGG 6 cut(s) 117, 180, 370, 457, 645, 652
BseMII CTCAG 5 cut(s) 30, 143, 330, 684, 713
BseNI ACTGG 1 cut(s) 657
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 351
BseXI GCAGC 3 cut(s) 16, 19, 314
BseYI CCCAGC 1 cut(s) 355
BsgI GTGCAG 1 cut(s) 18
BshNI GGYRCC 1 cut(s) 346
BsiSI CCGG 3 cut(s) 365, 585, 646
BslFI GGGAC 2 cut(s) 85, 691
BslI CCNNNNNNNGG 6 cut(s) 117, 180, 370, 457, 645, 652
BsmAI GTCTC 5 cut(s) 19, 132, 252, 424, 576
BsmFI GGGAC 2 cut(s) 85, 691
Bso31I GGTCTC 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 4 cut(s) 90, 264, 360, 426
Bsp1720I GCTNAGC 1 cut(s) 609
Bsp19I CCATGG 1 cut(s) 168
BspACI CCGC 1 cut(s) 77
BspCNI CTCAG 5 cut(s) 29, 142, 331, 685, 712
BspLI GGNNCC 1 cut(s) 348
BspMAI CTGCAG 1 cut(s) 511
BspMI ACCTGC 1 cut(s) 500
BspOI GCTAGC 1 cut(s) 608
BspPI GGATC 1 cut(s) 355
BspT107I GGYRCC 1 cut(s) 346
BspTNI GGTCTC 1 cut(s) 19
BsrFI RCCGGY 1 cut(s) 645
BsrI ACTGG 1 cut(s) 657
BssAI RCCGGY 1 cut(s) 645
BssECI CCNNGG 2 cut(s) 168, 281
BssMI GATC 4 cut(s) 90, 264, 360, 426
BssT1I CCWWGG 1 cut(s) 168
Bst4CI ACNGT 3 cut(s) 293, 547, 719
BstC8I GCNNGC 2 cut(s) 606, 647
BstDEI CTNAG 6 cut(s) 16, 129, 339, 609, 693, 699
BstDSI CCRYGG 2 cut(s) 168, 281
BstF5I GGATG 2 cut(s) 151, 351
BstH2I RGCGCY 1 cut(s) 623
BstHHI GCGC 1 cut(s) 622
BstKTI GATC 4 cut(s) 93, 267, 363, 429
BstMAI GTCTC 5 cut(s) 19, 132, 252, 424, 576
BstMBI GATC 4 cut(s) 90, 264, 360, 426
BstMWI GCNNNNNNNGC 6 cut(s) 26, 38, 86, 170, 610, 619
BstSCI CCNGG 2 cut(s) 363, 583
BstSFI CTRYAG 2 cut(s) 289, 507
BstSLI GKGCMC 1 cut(s) 351
BstV1I GCAGC 3 cut(s) 16, 19, 314
BstV2I GAAGAC 1 cut(s) 251
BstX2I RGATCY 1 cut(s) 264
BstYI RGATCY 1 cut(s) 264
BtgI CCRYGG 2 cut(s) 168, 281
BtsCI GGATG 2 cut(s) 151, 351
BtsI GCAGTG 1 cut(s) 504
BtsIMutI CAGTG 1 cut(s) 504
BveI ACCTGC 1 cut(s) 500
Cac8I GCNNGC 2 cut(s) 606, 647
CfoI GCGC 1 cut(s) 622
Cfr10I RCCGGY 1 cut(s) 645
Cfr13I GGNCC 2 cut(s) 278, 501
Csp6I GTAC 2 cut(s) 380, 715
CviAII CATG 2 cut(s) 169, 424
CviQI GTAC 2 cut(s) 380, 715
DdeI CTNAG 6 cut(s) 16, 129, 339, 609, 693, 699
DpnI GATC 4 cut(s) 92, 266, 362, 428
DpnII GATC 4 cut(s) 90, 264, 360, 426
EaeI YGGCCR 5 cut(s) 171, 312, 534, 586, 669
Eco130I CCWWGG 1 cut(s) 168
Eco31I GGTCTC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 437
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 2 cut(s) 172, 427
FaiI YATR 8 cut(s) 26, 108, 161, 170, 302, 321, 425, 521
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FaqI GGGAC 2 cut(s) 85, 691
FatI CATG 2 cut(s) 168, 423
Fnu4HI GCNGC 4 cut(s) 30, 33, 78, 328
FokI GGATG 2 cut(s) 138, 338
Fsp4HI GCNGC 4 cut(s) 30, 33, 78, 328
FspBI CTAG 3 cut(s) 96, 498, 605
GlaI GCGC 1 cut(s) 621
GluI GCNGC 4 cut(s) 30, 33, 78, 328
GsaI CCCAGC 1 cut(s) 359
HaeII RGCGCY 1 cut(s) 623
HapII CCGG 3 cut(s) 365, 585, 646
HhaI GCGC 1 cut(s) 622
Hin1II CATG 2 cut(s) 172, 427
Hin6I GCGC 1 cut(s) 620
HinP1I GCGC 1 cut(s) 620
HindIII AAGCTT 1 cut(s) 726
HinfI GANTC 4 cut(s) 146, 198, 211, 341
HpaII CCGG 3 cut(s) 365, 585, 646
HphI GGTGA 1 cut(s) 721
Hpy188I TCNGA 2 cut(s) 132, 275
Hpy188III TCNNGA 3 cut(s) 208, 625, 701
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 5 cut(s) 398, 461, 487, 645, 682
HpyCH4III ACNGT 3 cut(s) 293, 547, 719
HpyCH4IV ACGT 1 cut(s) 713
HpyCH4V TGCA 2 cut(s) 35, 509
HpyF10VI GCNNNNNNNGC 6 cut(s) 26, 38, 86, 170, 610, 619
HpyF3I CTNAG 6 cut(s) 16, 129, 339, 609, 693, 699
HpySE526I ACGT 1 cut(s) 713
Hsp92II CATG 2 cut(s) 172, 427
HspAI GCGC 1 cut(s) 620
KroI GCCGGC 1 cut(s) 645
KroNI GCCGGC 1 cut(s) 647
Kzo9I GATC 4 cut(s) 90, 264, 360, 426
LmnI GCTCC 2 cut(s) 601, 627
Lsp1109I GCAGC 3 cut(s) 16, 19, 314
MaeI CTAG 3 cut(s) 96, 498, 605
MaeII ACGT 1 cut(s) 713
MaeIII GTNAC 2 cut(s) 485, 709
MalI GATC 4 cut(s) 92, 266, 362, 428
MboI GATC 4 cut(s) 90, 264, 360, 426
MboII GAAGA 3 cut(s) 145, 148, 256
MflI RGATCY 1 cut(s) 264
MhlI GDGCHC 1 cut(s) 351
MlsI TGGCCA 2 cut(s) 173, 536
MluCI AATT 1 cut(s) 704
MluNI TGGCCA 2 cut(s) 173, 536
MlyI GAGTC 3 cut(s) 140, 192, 350
MmeI TCCRAC 1 cut(s) 438
Mox20I TGGCCA 2 cut(s) 173, 536
MroNI GCCGGC 1 cut(s) 645
MscI TGGCCA 2 cut(s) 173, 536
MslI CAYNNNNRTG 1 cut(s) 105
Msp20I TGGCCA 2 cut(s) 173, 536
MspI CCGG 3 cut(s) 365, 585, 646
MspR9I CCNGG 2 cut(s) 365, 585
MwoI GCNNNNNNNGC 6 cut(s) 26, 38, 86, 170, 610, 619
NaeI GCCGGC 1 cut(s) 647
NciI CCSGG 2 cut(s) 365, 585
NcoI CCATGG 1 cut(s) 168
NdeII GATC 4 cut(s) 90, 264, 360, 426
NgoMIV GCCGGC 1 cut(s) 645
NheI GCTAGC 1 cut(s) 604
NlaIII CATG 2 cut(s) 172, 427
NlaIV GGNNCC 1 cut(s) 348
NmuCI GTSAC 2 cut(s) 485, 709
PdiI GCCGGC 1 cut(s) 647
PfeI GAWTC 1 cut(s) 211
PflMI CCANNNNNTGG 1 cut(s) 180
PkrI GCNGC 4 cut(s) 31, 34, 79, 329
PleI GAGTC 3 cut(s) 140, 192, 349
PpsI GAGTC 3 cut(s) 140, 192, 349
PspFI CCCAGC 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 348
PspPI GGNCC 2 cut(s) 278, 501
PstI CTGCAG 1 cut(s) 511
PsuI RGATCY 1 cut(s) 264
RsaI GTAC 2 cut(s) 381, 716
RsaNI GTAC 2 cut(s) 380, 715
RseI CAYNNNNRTG 1 cut(s) 105
SatI GCNGC 4 cut(s) 30, 33, 78, 328
Sau3AI GATC 4 cut(s) 90, 264, 360, 426
Sau96I GGNCC 2 cut(s) 278, 501
ScaI AGTACT 1 cut(s) 381
SchI GAGTC 3 cut(s) 140, 192, 350
ScrFI CCNGG 2 cut(s) 365, 585
SduI GDGCHC 1 cut(s) 351
SetI ASST 7 cut(s) 15, 514, 606, 610, 667, 716, 730
SfcI CTRYAG 2 cut(s) 289, 507
SmiMI CAYNNNNRTG 1 cut(s) 105
Sse9I AATT 1 cut(s) 704
SsiI CCGC 1 cut(s) 77
SspI AATATT 1 cut(s) 472
SspMI CTAG 3 cut(s) 96, 498, 605
StyD4I CCNGG 2 cut(s) 363, 583
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 3 cut(s) 293, 547, 719
TaiI ACGT 1 cut(s) 716
TasI AATT 1 cut(s) 704
TatI WGTACW 1 cut(s) 379
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 1 cut(s) 211
TscAI CASTG 1 cut(s) 511
TseFI GTSAC 2 cut(s) 485, 709
TseI GCWGC 3 cut(s) 29, 32, 327
Tsp45I GTSAC 2 cut(s) 485, 709
TspDTI ATGAA 1 cut(s) 217
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 1 cut(s) 511
Van91I CCANNNNNTGG 1 cut(s) 180
XspI CTAG 3 cut(s) 96, 498, 605
ZrmI AGTACT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.