Rorug01G0176600

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000109
Physical Location & Seq
Forward (+)
24217357 .. 24221792
4436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0176600.1

Sequence Viewer

Length: 1068 bp
ATGCCGCACCTCGTTCGCGAGAATCTCTTCATCGGCAACATCACCGACGCCGTCGACGTACTCCAAAACGGCAGCGCCACTGTCACTCATATTCTCTCCGTCCTCAGCTCCGCCTCGATTTCCTTCTTCTCCGAATACAAGAAGGGTCTCACCATCCCCACCAAGGACATAACCAAGGTCTACGCCGGCGGCTGCGGCGCCTCCGCCTCCGAGGATGATGGCTCCGGGGGTAAGCTGCTGTACTTGTTGGAATATGCGGGGAAGGATTTGAAGCTGGTGAGAATGGGGGTTCCTGTTAGGGATATGGAGAGTGAGAATTTGCTGGATTATTTGGAGGTGTGTTTGGATTTTATTGATAAGAGTAGAAAAGAGGGCTCTGTTTTGGTGCATTGCTTTGCTGGTGTGTCTAGAAGTGCAGCTATCATTACAGCATATCTTATGAGAACAGAACAGTTATCGCAAGAAGATGCACTAGGATTCCTGCGACAGAGCTGTGAGTTTGTTTGCCCCAATGATGGTTTTCTAAATCAGCTAAAAATGTACGAAGATATGGGCTTCAAGGTTGATCATGCCAGCCCCATATATAAGTCTTTTCGTCTCAAAATATTGGGTGAATCTTATTATCGCGGAGATAAAATAGACAGCTCTAAATTTGGTGCTGATCCTGGTTTGCCCAGTGAAGTTACCTCTCAAGTGGAATCATCTCCAATTGGAGGAAAAACTGGGACATCTGCATTTCGCTGCAAAAAATGCCGACGACTTGTTGCAGTACAGGATAATGTTGTGGACCACATTCCAGGTCAGGGTGAGACATCTTTTGAATGGCGCAAGCGGAAAAGTAGCAACTATAACAACTTTGAGGATTCTGAATGTTCATCCATATTTGTTGAGCCTTTAAAATGGATGACAGCAGTGGAAGAAGGTGCAATGGAAGGCAAGTTGTCCTGTGCACATTGTGAAGCTCGTCTGGGTTACTTCAACTGGTCAGGCATCCAATGCAGTTGCGGGAGCTGGATCACCCCTGCCTTCCAGCTCCATAGAAGCCGAGTGGACATGAGCAGCGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

355

Amino Acids

39.21

Weight (kDa)

5.74

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DSPc PF00782 91 - 183 8.4e-26 Dual specificity phosphatase, catalytic domain
Tc-R-P PF22785 91 - 150 8.6e-07 Polymorphic toxin system, DSP-PTPase phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AccI GTMKAC 2 cut(s) 54, 180
AccII CGCG 2 cut(s) 18, 627
AciI CCGC 9 cut(s) 5, 111, 189, 195, 204, 257, 627, 832, 1005
AclWI GGATC 2 cut(s) 656, 1022
AcsI RAATTY 2 cut(s) 316, 650
AcyI GRCGYC 2 cut(s) 48, 198
AdeI CACNNNGTG 1 cut(s) 956
AfaI GTAC 4 cut(s) 60, 242, 542, 771
AfiI CCNNNNNNNGG 4 cut(s) 163, 515, 713, 803
AgsI TTSAA 4 cut(s) 271, 559, 821, 979
AjnI CCWGG 2 cut(s) 664, 796
Alw21I GWGCWC 1 cut(s) 952
Alw26I GTCTC 3 cut(s) 152, 602, 803
Alw44I GTGCAC 1 cut(s) 948
AlwI GGATC 2 cut(s) 656, 1022
ApaLI GTGCAC 1 cut(s) 948
ApeKI GCWGC 6 cut(s) 72, 192, 235, 416, 741, 1059
ApoI RAATTY 2 cut(s) 316, 650
Asp700I GAANNNNTTC 1 cut(s) 26
AspLEI GCGC 3 cut(s) 77, 200, 828
AspS9I GGNCC 1 cut(s) 787
AsuC2I CCSGG 1 cut(s) 226
AsuHPI GGTGA 6 cut(s) 34, 142, 289, 623, 818, 1009
AvaII GGWCC 1 cut(s) 787
BaeGI GKGCMC 1 cut(s) 952
BanI GGYRCC 1 cut(s) 197
BanII GRGCYC 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 952
BbvCI CCTCAGC 1 cut(s) 104
BbvI GCAGC 5 cut(s) 84, 179, 222, 428, 728
BccI CCATC 3 cut(s) 161, 212, 509
BceAI ACGGC 2 cut(s) 35, 85
BcgI CGANNNNNNTGC 1 cut(s) 30
BciT130I CCWGG 2 cut(s) 666, 798
BclI TGATCA 1 cut(s) 565
BcnI CCSGG 1 cut(s) 226
BcoDI GTCTC 3 cut(s) 152, 602, 803
BfaI CTAG 2 cut(s) 408, 473
BfoI RGCGCY 2 cut(s) 78, 201
BisI GCNGC 9 cut(s) 5, 73, 190, 193, 196, 236, 417, 742, 1060
BlsI GCNGC 9 cut(s) 6, 74, 191, 194, 197, 237, 418, 743, 1061
Bme1390I CCNGG 3 cut(s) 226, 666, 798
Bme18I GGWCC 1 cut(s) 787
BmgT120I GGNCC 1 cut(s) 787
BmiI GGNNCC 3 cut(s) 199, 223, 291
BmrFI CCNGG 3 cut(s) 226, 666, 798
BmrI ACTGGG 2 cut(s) 669, 732
BmsI GCATC 2 cut(s) 457, 999
BmuI ACTGGG 2 cut(s) 669, 732
Bpu10I CCTNAGC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 675
BpuMI CCSGG 1 cut(s) 226
BsaHI GRCGYC 2 cut(s) 48, 198
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 4 cut(s) 162, 174, 210, 225
Bsc4I CCNNNNNNNGG 4 cut(s) 163, 515, 713, 803
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 3 cut(s) 675, 727, 986
Bse3DI GCAATG 2 cut(s) 388, 933
BseBI CCWGG 2 cut(s) 666, 798
BseDI CCNNGG 4 cut(s) 162, 174, 210, 225
BseGI GGATG 5 cut(s) 153, 220, 875, 909, 990
BseLI CCNNNNNNNGG 4 cut(s) 163, 515, 713, 803
BseMI GCAATG 2 cut(s) 388, 933
BseMII CTCAG 1 cut(s) 118
BseNI ACTGG 3 cut(s) 675, 727, 986
BseSI GKGCMC 1 cut(s) 952
BseXI GCAGC 5 cut(s) 84, 179, 222, 428, 728
BsgI GTGCAG 1 cut(s) 435
Bsh1236I CGCG 2 cut(s) 18, 627
BshNI GGYRCC 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 952
BsiSI CCGG 2 cut(s) 186, 225
BslFI GGGAC 1 cut(s) 739
BslI CCNNNNNNNGG 4 cut(s) 163, 515, 713, 803
BsmAI GTCTC 3 cut(s) 152, 602, 803
BsmBI CGTCTC 1 cut(s) 602
BsmFI GGGAC 1 cut(s) 739
Bso31I GGTCTC 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 377, 952
Bsp143I GATC 3 cut(s) 565, 661, 1014
Bsp68I TCGCGA 1 cut(s) 18
BspACI CCGC 9 cut(s) 5, 111, 189, 195, 204, 257, 627, 832, 1005
BspCNI CTCAG 1 cut(s) 117
BspFNI CGCG 2 cut(s) 18, 627
BspLI GGNNCC 3 cut(s) 199, 223, 291
BspPI GGATC 2 cut(s) 656, 1022
BspT107I GGYRCC 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 152
BsrDI GCAATG 2 cut(s) 388, 933
BsrFI RCCGGY 1 cut(s) 185
BsrI ACTGG 3 cut(s) 675, 727, 986
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 4 cut(s) 162, 174, 210, 225
BssMI GATC 3 cut(s) 565, 661, 1014
BssNI GRCGYC 2 cut(s) 48, 198
BssT1I CCWWGG 2 cut(s) 162, 174
Bst2UI CCWGG 2 cut(s) 666, 798
Bst4CI ACNGT 2 cut(s) 82, 453
Bst6I CTCTTC 1 cut(s) 32
BstACI GRCGYC 2 cut(s) 48, 198
BstAPI GCANNNNNTGC 2 cut(s) 750, 996
BstC8I GCNNGC 3 cut(s) 187, 574, 830
BstDEI CTNAG 1 cut(s) 104
BstF5I GGATG 5 cut(s) 153, 220, 875, 909, 990
BstFNI CGCG 2 cut(s) 18, 627
BstH2I RGCGCY 2 cut(s) 78, 201
BstHHI GCGC 3 cut(s) 77, 200, 828
BstKTI GATC 3 cut(s) 568, 664, 1017
BstMAI GTCTC 3 cut(s) 152, 602, 803
BstMBI GATC 3 cut(s) 565, 661, 1014
BstMWI GCNNNNNNNGC 3 cut(s) 195, 750, 996
BstNI CCWGG 2 cut(s) 666, 798
BstSCI CCNGG 3 cut(s) 224, 664, 796
BstSLI GKGCMC 1 cut(s) 952
BstUI CGCG 2 cut(s) 18, 627
BstV1I GCAGC 5 cut(s) 84, 179, 222, 428, 728
BtsCI GGATG 5 cut(s) 153, 220, 875, 909, 990
BtsI GCAGTG 1 cut(s) 918
BtsIMutI CAGTG 3 cut(s) 78, 682, 918
BtuMI TCGCGA 1 cut(s) 18
Cac8I GCNNGC 3 cut(s) 187, 574, 830
CfoI GCGC 3 cut(s) 77, 200, 828
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 787
CseI GACGC 2 cut(s) 56, 1051
Csp6I GTAC 4 cut(s) 59, 241, 541, 770
CviAII CATG 2 cut(s) 569, 1054
CviQI GTAC 4 cut(s) 59, 241, 541, 770
DdeI CTNAG 1 cut(s) 104
DinI GGCGCC 1 cut(s) 199
DpnI GATC 3 cut(s) 567, 663, 1016
DpnII GATC 3 cut(s) 565, 661, 1014
DraI TTTAAA 1 cut(s) 897
DraIII CACNNNGTG 1 cut(s) 956
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 2 cut(s) 100, 193
Eco130I CCWWGG 2 cut(s) 162, 174
Eco24I GRGCYC 1 cut(s) 377
Eco31I GGTCTC 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 787
EcoRII CCWGG 2 cut(s) 664, 796
EcoT14I CCWWGG 2 cut(s) 162, 174
EcoT38I GRGCYC 1 cut(s) 377
EgeI GGCGCC 1 cut(s) 199
EheI GGCGCC 1 cut(s) 199
ErhI CCWWGG 2 cut(s) 162, 174
Esp3I CGTCTC 1 cut(s) 602
FaeI CATG 2 cut(s) 572, 1057
FaqI GGGAC 1 cut(s) 739
FatI CATG 2 cut(s) 568, 1053
FauI CCCGC 2 cut(s) 250, 998
FbaI TGATCA 1 cut(s) 565
FblI GTMKAC 2 cut(s) 54, 180
Fnu4HI GCNGC 9 cut(s) 5, 73, 190, 193, 196, 236, 417, 742, 1060
FokI GGATG 5 cut(s) 140, 227, 862, 916, 977
FriOI GRGCYC 1 cut(s) 377
Fsp4HI GCNGC 9 cut(s) 5, 73, 190, 193, 196, 236, 417, 742, 1060
FspBI CTAG 2 cut(s) 408, 473
GlaI GCGC 3 cut(s) 76, 199, 827
GluI GCNGC 9 cut(s) 5, 73, 190, 193, 196, 236, 417, 742, 1060
HaeII RGCGCY 2 cut(s) 78, 201
HapII CCGG 2 cut(s) 186, 225
HgaI GACGC 2 cut(s) 56, 1051
HhaI GCGC 3 cut(s) 77, 200, 828
Hin1I GRCGYC 2 cut(s) 48, 198
Hin1II CATG 2 cut(s) 572, 1057
Hin6I GCGC 3 cut(s) 75, 198, 826
HinP1I GCGC 3 cut(s) 75, 198, 826
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HinfI GANTC 5 cut(s) 22, 477, 614, 698, 863
HpaII CCGG 2 cut(s) 186, 225
HphI GGTGA 6 cut(s) 34, 142, 289, 623, 818, 1009
Hpy166II GTNNAC 5 cut(s) 55, 181, 787, 950, 1051
Hpy188I TCNGA 3 cut(s) 133, 211, 868
Hpy188III TCNNGA 2 cut(s) 17, 408
Hpy8I GTNNAC 5 cut(s) 55, 181, 787, 950, 1051
Hpy99I CGWCG 4 cut(s) 50, 56, 59, 759
HpyAV CCTTC 6 cut(s) 133, 136, 256, 914, 926, 1036
HpyCH4III ACNGT 2 cut(s) 82, 453
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 9 cut(s) 388, 416, 470, 734, 744, 767, 926, 950, 999
HpyF10VI GCNNNNNNNGC 3 cut(s) 195, 750, 996
HpyF3I CTNAG 1 cut(s) 104
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 2 cut(s) 48, 198
Hsp92II CATG 2 cut(s) 572, 1057
HspAI GCGC 3 cut(s) 75, 198, 826
KasI GGCGCC 1 cut(s) 197
KroI GCCGGC 1 cut(s) 185
KroNI GCCGGC 1 cut(s) 187
Ksp22I TGATCA 1 cut(s) 565
Kzo9I GATC 3 cut(s) 565, 661, 1014
LmnI GCTCC 4 cut(s) 113, 227, 1008, 1038
Lsp1109I GCAGC 5 cut(s) 84, 179, 222, 428, 728
LweI GCATC 2 cut(s) 457, 999
MaeI CTAG 2 cut(s) 408, 473
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 3 cut(s) 82, 682, 971
MalI GATC 3 cut(s) 567, 663, 1016
MboI GATC 3 cut(s) 565, 661, 1014
MboII GAAGA 5 cut(s) 19, 118, 476, 557, 929
MfeI CAATTG 1 cut(s) 708
MhlI GDGCHC 2 cut(s) 377, 952
MluCI AATT 3 cut(s) 316, 650, 708
Mly113I GGCGCC 1 cut(s) 198
MmeI TCCRAC 1 cut(s) 228
MreI CGCCGGCG 1 cut(s) 185
MroNI GCCGGC 1 cut(s) 185
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 1 cut(s) 896
MspI CCGG 2 cut(s) 186, 225
MspR9I CCNGG 3 cut(s) 226, 666, 798
MunI CAATTG 1 cut(s) 708
MvaI CCWGG 2 cut(s) 666, 798
MvnI CGCG 2 cut(s) 18, 627
MwoI GCNNNNNNNGC 3 cut(s) 195, 750, 996
NaeI GCCGGC 1 cut(s) 187
NarI GGCGCC 1 cut(s) 198
NciI CCSGG 1 cut(s) 226
NdeII GATC 3 cut(s) 565, 661, 1014
NgoMIV GCCGGC 1 cut(s) 185
NlaIII CATG 2 cut(s) 572, 1057
NlaIV GGNNCC 3 cut(s) 199, 223, 291
NmuCI GTSAC 1 cut(s) 82
NruI TCGCGA 1 cut(s) 18
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PdiI GCCGGC 1 cut(s) 187
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 5 cut(s) 22, 477, 614, 698, 863
PflFI GACNNNGTC 1 cut(s) 50
PkrI GCNGC 9 cut(s) 6, 74, 191, 194, 197, 237, 418, 743, 1061
PluTI GGCGCC 1 cut(s) 201
Psp6I CCWGG 2 cut(s) 664, 796
PspGI CCWGG 2 cut(s) 664, 796
PspN4I GGNNCC 3 cut(s) 199, 223, 291
PspPI GGNCC 1 cut(s) 787
PsyI GACNNNGTC 1 cut(s) 50
RruI TCGCGA 1 cut(s) 18
RsaI GTAC 4 cut(s) 60, 242, 542, 771
RsaNI GTAC 4 cut(s) 59, 241, 541, 770
SalI GTCGAC 1 cut(s) 53
SaqAI TTAA 1 cut(s) 896
SatI GCNGC 9 cut(s) 5, 73, 190, 193, 196, 236, 417, 742, 1060
Sau3AI GATC 3 cut(s) 565, 661, 1014
Sau96I GGNCC 1 cut(s) 787
ScrFI CCNGG 3 cut(s) 226, 666, 798
SduI GDGCHC 2 cut(s) 377, 952
SfaNI GCATC 2 cut(s) 457, 999
SfoI GGCGCC 1 cut(s) 199
SgrAI CRCCGGYG 1 cut(s) 185
SgrDI CGTCGACG 1 cut(s) 53
SinI GGWCC 1 cut(s) 787
SmlI CTYRAG 1 cut(s) 690
SmoI CTYRAG 1 cut(s) 690
Sse9I AATT 3 cut(s) 316, 650, 708
SsiI CCGC 9 cut(s) 5, 111, 189, 195, 204, 257, 627, 832, 1005
SspDI GGCGCC 1 cut(s) 197
SspI AATATT 1 cut(s) 606
SspMI CTAG 2 cut(s) 408, 473
StyD4I CCNGG 3 cut(s) 224, 664, 796
StyI CCWWGG 2 cut(s) 162, 174
TaaI ACNGT 2 cut(s) 82, 453
TaiI ACGT 1 cut(s) 60
TaqI TCGA 2 cut(s) 54, 116
TasI AATT 3 cut(s) 316, 650, 708
TatI WGTACW 2 cut(s) 240, 769
TauI GCSGC 3 cut(s) 7, 192, 198
TfiI GAWTC 5 cut(s) 22, 477, 614, 698, 863
Tru1I TTAA 1 cut(s) 896
Tru9I TTAA 1 cut(s) 896
TscAI CASTG 3 cut(s) 85, 682, 918
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 6 cut(s) 72, 192, 235, 416, 741, 1059
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 2 cut(s) 19, 864
TspGWI ACGGA 1 cut(s) 88
TspRI CASTG 3 cut(s) 85, 682, 918
Tth111I GACNNNGTC 1 cut(s) 50
VneI GTGCAC 1 cut(s) 948
VpaK11BI GGWCC 1 cut(s) 787
XapI RAATTY 2 cut(s) 316, 650
XbaI TCTAGA 1 cut(s) 407
XmiI GTMKAC 2 cut(s) 54, 180
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 2 cut(s) 408, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.