Rmu_sc0040072.1_g000003

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040072.1
OG0000109
Physical Location & Seq
Reverse (-)
9137 .. 10480
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040072.1_g000003.1.cds

Sequence Viewer

Length: 1344 bp
atggttgatcacatcaccgctcgccttgctgctgctctagctatctcggaggatggtcgtacgtccttcggcccggccggggctgctacggtgtcctccgatcattttgcagtgggaagattattctctattacggccaagcgccgttgtgatccaaaggctttcataggtaccatgacctctctctgggggcttggtaatcgtctgtctgtccgggcacaccaggatcgatatgtttttcaatttgttcatatggaggaccggtcgaggattgtcgaaggtgctccatggttctttggcaagtgggctcttactatggcggagttcgatggactacaaaattttgcttctgttcccctttcttcagtgccggtctgggttgagatcatgggacttcctctggctcttgtcactgagggaacagtggcacttattggagccacgctaggggagatggtgaatcttgacaggccgggcattcgtaagggtacggcggcgcgggttaggatcagacatgccttgtcggagttggtgagacaagttttccctccctccatctttgacttcaagtctggagcatctgccactgtgagattcaggtacgaacgcctcgtcgatttttgccttgtttgtgggatgttagaacatcaacgtttgggttgtgctgggctgccagaggtggtagtgaccaccattggtcataaccctaaccctaattcggctagggctctatcatctgttggtcagtctactctaactttggaggaggttttggcttggtctccggtgccgaatctgttttctgctaatcccagattgctcattctaggtatatcagggtcggctttagctacacatgtggcaaagatcctggcttcaattactgtccctaagctagtgatggtcgatgataatgctgatgttcccatcactgggaagaagagaactgcagctgtggctttggtgcaatattcaaaacgtaagaggtctgatactgtaatccctcccactgaatcggtggttctggattttgaaccggaactagctctgaagaatactaatgagattctcctagtctctcctaccaagaaggcaaaggttggctggcccccaggtcgcaataataatcccaaatcaattggtttgaagcttaggaagctgactggtgaggtagtcaaacctcgtagtaagagaaactttaaggcaattgatcttccttatccttctggggaaggttgcatggtggagatttcatcctctagcaaagtgcctgaactgaaggaaagcactctcaagagtgccctagactgggtggggtttgggagcatgaataaattgagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

447

Amino Acids

48.52

Weight (kDa)

9.76

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 170
AccB1I GGYRCC 2 cut(s) 170, 787
AccBSI CCGCTC 1 cut(s) 20
AccI GTMKAC 1 cut(s) 749
AccII CGCG 1 cut(s) 499
AciI CCGC 4 cut(s) 18, 320, 494, 499
AclI AACGTT 1 cut(s) 652
AclWI GGATC 4 cut(s) 146, 234, 515, 862
AcoI YGGCCR 2 cut(s) 75, 135
AcsI RAATTY 1 cut(s) 340
AcuI CTGAAG 3 cut(s) 348, 1070, 1298
AfaI GTAC 4 cut(s) 61, 172, 490, 602
AfiI CCNNNNNNNGG 8 cut(s) 79, 186, 447, 718, 932, 933, 1308, 1309
AflIII ACRYGT 1 cut(s) 856
AgeI ACCGGT 1 cut(s) 261
AgsI TTSAA 6 cut(s) 242, 568, 879, 975, 1034, 1147
AhdI GACNNNNNGTC 1 cut(s) 568
AjnI CCWGG 3 cut(s) 222, 870, 1111
AluBI AGCT 7 cut(s) 41, 851, 895, 953, 1046, 1150, 1159
AluI AGCT 7 cut(s) 41, 851, 895, 953, 1046, 1150, 1159
Alw21I GWGCWC 1 cut(s) 286
Alw26I GTCTC 3 cut(s) 529, 786, 1081
AlwI GGATC 4 cut(s) 146, 234, 515, 862
AoxI GGCC 5 cut(s) 70, 75, 135, 470, 1106
ApeKI GCWGC 5 cut(s) 29, 32, 83, 670, 950
ApoI RAATTY 1 cut(s) 340
ArsI GACNNNNNNTTYG 2 cut(s) 597, 629
AsiGI ACCGGT 1 cut(s) 261
Asp718I GGTACC 1 cut(s) 170
AspLEI GCGC 2 cut(s) 144, 499
AspS9I GGNCC 3 cut(s) 71, 259, 1107
AsuC2I CCSGG 4 cut(s) 74, 79, 215, 474
AsuHPI GGTGA 4 cut(s) 7, 469, 544, 1178
AvaII GGWCC 1 cut(s) 259
BaeGI GKGCMC 2 cut(s) 220, 1303
BanI GGYRCC 2 cut(s) 170, 787
BanII GRGCYC 2 cut(s) 310, 730
Bbv12I GWGCWC 1 cut(s) 286
BbvI GCAGC 5 cut(s) 16, 19, 70, 657, 962
BccI CCATC 6 cut(s) 47, 323, 448, 563, 895, 935
BceAI ACGGC 3 cut(s) 129, 150, 507
BcgI CGANNNNNNTGC 4 cut(s) 89, 123, 896, 930
BciT130I CCWGG 3 cut(s) 224, 872, 1113
BclI TGATCA 1 cut(s) 7
BcnI CCSGG 4 cut(s) 74, 79, 215, 474
BcoDI GTCTC 3 cut(s) 529, 786, 1081
BfaI CTAG 9 cut(s) 38, 446, 723, 827, 896, 1043, 1073, 1260, 1304
BfmI CTRYAG 1 cut(s) 948
BfoI RGCGCY 1 cut(s) 145
BisI GCNGC 6 cut(s) 30, 33, 84, 495, 671, 951
BlsI GCNGC 6 cut(s) 31, 34, 85, 496, 672, 952
Bme1390I CCNGG 7 cut(s) 74, 79, 215, 224, 474, 872, 1113
Bme18I GGWCC 1 cut(s) 259
BmeRI GACNNNNNGTC 1 cut(s) 568
BmgT120I GGNCC 3 cut(s) 71, 259, 1107
BmiI GGNNCC 4 cut(s) 172, 439, 789, 1109
BmrFI CCNGG 7 cut(s) 74, 79, 215, 224, 474, 872, 1113
BmrI ACTGGG 2 cut(s) 942, 1318
BmsI GCATC 1 cut(s) 587
BmuI ACTGGG 2 cut(s) 942, 1318
BpmI CTGGAG 1 cut(s) 594
Bpu10I CCTNAGC 2 cut(s) 891, 1151
BpuEI CTTGAG 1 cut(s) 1277
BpuMI CCSGG 4 cut(s) 74, 79, 215, 474
Bsa29I ATCGAT 1 cut(s) 229
BsaI GGTCTC 1 cut(s) 786
BsaJI CCNNGG 3 cut(s) 78, 287, 1111
BsaWI WCCGGW 3 cut(s) 261, 784, 1036
BsaXI ACNNNNNCTCC 2 cut(s) 248, 278
Bsc4I CCNNNNNNNGG 8 cut(s) 79, 186, 447, 718, 932, 933, 1308, 1309
Bse118I RCCGGY 2 cut(s) 261, 370
Bse1I ACTGG 3 cut(s) 937, 1168, 1313
BseBI CCWGG 3 cut(s) 224, 872, 1113
BseCI ATCGAT 1 cut(s) 229
BseDI CCNNGG 3 cut(s) 78, 287, 1111
BseGI GGATG 3 cut(s) 58, 642, 1253
BseLI CCNNNNNNNGG 8 cut(s) 79, 186, 447, 718, 932, 933, 1308, 1309
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 3 cut(s) 937, 1168, 1313
BseRI GAGGAG 1 cut(s) 779
BseSI GKGCMC 2 cut(s) 220, 1303
BseX3I CGGCCG 1 cut(s) 75
BseXI GCAGC 5 cut(s) 16, 19, 70, 657, 962
BseYI CCCAGC 1 cut(s) 665
Bsh1236I CGCG 1 cut(s) 499
Bsh1285I CGRYCG 2 cut(s) 78, 266
BshFI GGCC 5 cut(s) 72, 77, 137, 472, 1108
BshNI GGYRCC 2 cut(s) 170, 787
BshTI ACCGGT 1 cut(s) 261
BshVI ATCGAT 1 cut(s) 229
BsiEI CGRYCG 2 cut(s) 78, 266
BsiHKAI GWGCWC 1 cut(s) 286
BsiSI CCGG 8 cut(s) 74, 78, 214, 262, 371, 473, 785, 1037
BsiWI CGTACG 1 cut(s) 59
BslFI GGGAC 2 cut(s) 405, 872
BslI CCNNNNNNNGG 8 cut(s) 79, 186, 447, 718, 932, 933, 1308, 1309
BsmAI GTCTC 3 cut(s) 529, 786, 1081
BsmFI GGGAC 2 cut(s) 405, 872
BsmI GAATGC 1 cut(s) 477
BsnI GGCC 5 cut(s) 72, 77, 137, 472, 1108
Bso31I GGTCTC 1 cut(s) 786
Bsp1286I GDGCHC 5 cut(s) 220, 286, 310, 730, 1303
Bsp143I GATC 8 cut(s) 7, 100, 151, 226, 384, 507, 867, 1210
Bsp19I CCATGG 1 cut(s) 287
BspACI CCGC 4 cut(s) 18, 320, 494, 499
BspANI GGCC 5 cut(s) 72, 77, 137, 472, 1108
BspCNI CTCAG 1 cut(s) 406
BspDI ATCGAT 1 cut(s) 229
BspFNI CGCG 1 cut(s) 499
BspLI GGNNCC 4 cut(s) 172, 439, 789, 1109
BspMAI CTGCAG 1 cut(s) 952
BspPI GGATC 4 cut(s) 146, 234, 515, 862
BspT107I GGYRCC 2 cut(s) 170, 787
BspTNI GGTCTC 1 cut(s) 786
BsrBI CCGCTC 1 cut(s) 20
BsrFI RCCGGY 2 cut(s) 261, 370
BsrI ACTGG 3 cut(s) 937, 1168, 1313
BssAI RCCGGY 2 cut(s) 261, 370
BssECI CCNNGG 3 cut(s) 78, 287, 1111
BssMI GATC 8 cut(s) 7, 100, 151, 226, 384, 507, 867, 1210
BssT1I CCWWGG 1 cut(s) 287
Bst2UI CCWGG 3 cut(s) 224, 872, 1113
Bst4CI ACNGT 5 cut(s) 91, 424, 589, 886, 997
Bst6I CTCTTC 1 cut(s) 935
BstC8I GCNNGC 2 cut(s) 22, 1106
BstDEI CTNAG 3 cut(s) 414, 891, 1151
BstDSI CCRYGG 1 cut(s) 287
BstF5I GGATG 3 cut(s) 58, 642, 1253
BstFNI CGCG 1 cut(s) 499
BstH2I RGCGCY 1 cut(s) 145
BstHHI GCGC 2 cut(s) 144, 499
BstKTI GATC 8 cut(s) 10, 103, 154, 229, 387, 510, 870, 1213
BstMAI GTCTC 3 cut(s) 529, 786, 1081
BstMBI GATC 8 cut(s) 7, 100, 151, 226, 384, 507, 867, 1210
BstMCI CGRYCG 2 cut(s) 78, 266
BstMWI GCNNNNNNNGC 5 cut(s) 26, 38, 83, 956, 1156
BstNI CCWGG 3 cut(s) 224, 872, 1113
BstNSI RCATGY 2 cut(s) 518, 860
BstSCI CCNGG 7 cut(s) 72, 77, 213, 222, 472, 870, 1111
BstSFI CTRYAG 1 cut(s) 948
BstSLI GKGCMC 2 cut(s) 220, 1303
BstUI CGCG 1 cut(s) 499
BstV1I GCAGC 5 cut(s) 16, 19, 70, 657, 962
BstX2I RGATCY 1 cut(s) 867
BstYI RGATCY 1 cut(s) 867
BstZI CGGCCG 1 cut(s) 75
Bsu15I ATCGAT 1 cut(s) 229
BsuRI GGCC 5 cut(s) 72, 77, 137, 472, 1108
BsuTUI ATCGAT 1 cut(s) 229
BtgI CCRYGG 1 cut(s) 287
BtsCI GGATG 3 cut(s) 58, 642, 1253
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 7 cut(s) 117, 372, 411, 429, 585, 930, 1008
Cac8I GCNNGC 2 cut(s) 22, 1106
CfoI GCGC 2 cut(s) 144, 499
Cfr10I RCCGGY 2 cut(s) 261, 370
Cfr13I GGNCC 3 cut(s) 71, 259, 1107
ClaI ATCGAT 1 cut(s) 229
Csp6I GTAC 4 cut(s) 60, 171, 489, 601
CspAI ACCGGT 1 cut(s) 261
CviAII CATG 7 cut(s) 175, 288, 388, 515, 857, 1240, 1327
CviQI GTAC 4 cut(s) 60, 171, 489, 601
DdeI CTNAG 3 cut(s) 414, 891, 1151
DpnI GATC 8 cut(s) 9, 102, 153, 228, 386, 509, 869, 1212
DpnII GATC 8 cut(s) 7, 100, 151, 226, 384, 507, 867, 1210
DriI GACNNNNNGTC 1 cut(s) 568
EaeI YGGCCR 2 cut(s) 75, 135
EagI CGGCCG 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 935
Eam1105I GACNNNNNGTC 1 cut(s) 568
EarI CTCTTC 1 cut(s) 935
EciI GGCGGA 1 cut(s) 335
EclXI CGGCCG 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 287
Eco24I GRGCYC 2 cut(s) 310, 730
Eco31I GGTCTC 1 cut(s) 786
Eco47I GGWCC 1 cut(s) 259
Eco52I CGGCCG 1 cut(s) 75
Eco57I CTGAAG 3 cut(s) 348, 1070, 1298
EcoRII CCWGG 3 cut(s) 222, 870, 1111
EcoT14I CCWWGG 1 cut(s) 287
EcoT38I GRGCYC 2 cut(s) 310, 730
ErhI CCWWGG 1 cut(s) 287
FaeI CATG 7 cut(s) 178, 291, 391, 518, 860, 1243, 1330
FalI AAGNNNNNCTT 2 cut(s) 1181, 1213
FaqI GGGAC 2 cut(s) 405, 872
FatI CATG 7 cut(s) 174, 287, 387, 514, 856, 1239, 1326
FauI CCCGC 1 cut(s) 492
FauNDI CATATG 1 cut(s) 252
FbaI TGATCA 1 cut(s) 7
FblI GTMKAC 1 cut(s) 749
Fnu4HI GCNGC 6 cut(s) 30, 33, 84, 495, 671, 951
FokI GGATG 3 cut(s) 65, 649, 1240
FriOI GRGCYC 2 cut(s) 310, 730
Fsp4HI GCNGC 6 cut(s) 30, 33, 84, 495, 671, 951
FspBI CTAG 9 cut(s) 38, 446, 723, 827, 896, 1043, 1073, 1260, 1304
GlaI GCGC 2 cut(s) 143, 498
GluI GCNGC 6 cut(s) 30, 33, 84, 495, 671, 951
GsaI CCCAGC 1 cut(s) 669
GsuI CTGGAG 1 cut(s) 594
HaeII RGCGCY 1 cut(s) 145
HaeIII GGCC 5 cut(s) 72, 77, 137, 472, 1108
HapII CCGG 8 cut(s) 74, 78, 214, 262, 371, 473, 785, 1037
HhaI GCGC 2 cut(s) 144, 499
Hin1II CATG 7 cut(s) 178, 291, 391, 518, 860, 1243, 1330
Hin6I GCGC 2 cut(s) 142, 497
HinP1I GCGC 2 cut(s) 142, 497
HindIII AAGCTT 1 cut(s) 1148
HinfI GANTC 5 cut(s) 460, 594, 793, 1013, 1066
HpaII CCGG 8 cut(s) 74, 78, 214, 262, 371, 473, 785, 1037
HphI GGTGA 4 cut(s) 7, 469, 544, 1178
Hpy166II GTNNAC 1 cut(s) 750
Hpy188I TCNGA 6 cut(s) 49, 100, 512, 526, 991, 1050
Hpy188III TCNNGA 4 cut(s) 464, 573, 1025, 1294
Hpy8I GTNNAC 1 cut(s) 750
Hpy99I CGWCG 1 cut(s) 617
HpyAV CCTTC 6 cut(s) 76, 272, 1084, 1226, 1233, 1273
HpyCH4III ACNGT 5 cut(s) 91, 424, 589, 886, 997
HpyCH4IV ACGT 3 cut(s) 62, 652, 979
HpyCH4V TGCA 4 cut(s) 110, 950, 967, 1239
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 38, 83, 956, 1156
HpyF3I CTNAG 3 cut(s) 414, 891, 1151
HpySE526I ACGT 3 cut(s) 62, 652, 979
Hsp92II CATG 7 cut(s) 178, 291, 391, 518, 860, 1243, 1330
HspAI GCGC 2 cut(s) 142, 497
KpnI GGTACC 1 cut(s) 174
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 8 cut(s) 7, 100, 151, 226, 384, 507, 867, 1210
LmnI GCTCC 4 cut(s) 289, 437, 575, 1323
Lsp1109I GCAGC 5 cut(s) 16, 19, 70, 657, 962
LweI GCATC 1 cut(s) 587
MaeI CTAG 9 cut(s) 38, 446, 723, 827, 896, 1043, 1073, 1260, 1304
MaeII ACGT 3 cut(s) 62, 652, 979
MaeIII GTNAC 2 cut(s) 409, 685
MalI GATC 8 cut(s) 9, 102, 153, 228, 386, 509, 869, 1212
MbiI CCGCTC 1 cut(s) 20
MboI GATC 8 cut(s) 7, 100, 151, 226, 384, 507, 867, 1210
MboII GAAGA 6 cut(s) 129, 354, 949, 952, 1063, 1205
MfeI CAATTG 2 cut(s) 1137, 1206
MflI RGATCY 1 cut(s) 867
MhlI GDGCHC 5 cut(s) 220, 286, 310, 730, 1303
MluCI AATT 7 cut(s) 242, 340, 715, 879, 1137, 1206, 1334
MmeI TCCRAC 1 cut(s) 504
MseI TTAA 1 cut(s) 1200
MspA1I CMGCKG 1 cut(s) 953
MspI CCGG 8 cut(s) 74, 78, 214, 262, 371, 473, 785, 1037
MspR9I CCNGG 7 cut(s) 74, 79, 215, 224, 474, 872, 1113
MunI CAATTG 2 cut(s) 1137, 1206
Mva1269I GAATGC 1 cut(s) 477
MvaI CCWGG 3 cut(s) 224, 872, 1113
MvnI CGCG 1 cut(s) 499
MwoI GCNNNNNNNGC 5 cut(s) 26, 38, 83, 956, 1156
NciI CCSGG 4 cut(s) 74, 79, 215, 474
NcoI CCATGG 1 cut(s) 287
NdeI CATATG 1 cut(s) 252
NdeII GATC 8 cut(s) 7, 100, 151, 226, 384, 507, 867, 1210
NlaIII CATG 7 cut(s) 178, 291, 391, 518, 860, 1243, 1330
NlaIV GGNNCC 4 cut(s) 172, 439, 789, 1109
NmuCI GTSAC 2 cut(s) 409, 685
NspI RCATGY 2 cut(s) 518, 860
PciI ACATGT 1 cut(s) 856
PcsI WCGNNNNNNNCGW 1 cut(s) 609
PctI GAATGC 1 cut(s) 477
PfeI GAWTC 5 cut(s) 460, 594, 793, 1013, 1066
Pfl23II CGTACG 1 cut(s) 59
PinAI ACCGGT 1 cut(s) 261
PkrI GCNGC 6 cut(s) 31, 34, 85, 496, 672, 952
PscI ACATGT 1 cut(s) 856
Psp1406I AACGTT 1 cut(s) 652
Psp6I CCWGG 3 cut(s) 222, 870, 1111
PspFI CCCAGC 1 cut(s) 665
PspGI CCWGG 3 cut(s) 222, 870, 1111
PspLI CGTACG 1 cut(s) 59
PspN4I GGNNCC 4 cut(s) 172, 439, 789, 1109
PspPI GGNCC 3 cut(s) 71, 259, 1107
PstI CTGCAG 1 cut(s) 952
PsuI RGATCY 1 cut(s) 867
PvuII CAGCTG 1 cut(s) 953
RsaI GTAC 4 cut(s) 61, 172, 490, 602
RsaNI GTAC 4 cut(s) 60, 171, 489, 601
SaqAI TTAA 1 cut(s) 1200
SatI GCNGC 6 cut(s) 30, 33, 84, 495, 671, 951
Sau3AI GATC 8 cut(s) 7, 100, 151, 226, 384, 507, 867, 1210
Sau96I GGNCC 3 cut(s) 71, 259, 1107
ScrFI CCNGG 7 cut(s) 74, 79, 215, 224, 474, 872, 1113
SduI GDGCHC 5 cut(s) 220, 286, 310, 730, 1303
SfaNI GCATC 1 cut(s) 587
SfcI CTRYAG 1 cut(s) 948
SinI GGWCC 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 1292
SmoI CTYRAG 1 cut(s) 1292
Sse9I AATT 7 cut(s) 242, 340, 715, 879, 1137, 1206, 1334
SsiI CCGC 4 cut(s) 18, 320, 494, 499
SspI AATATT 1 cut(s) 971
SspMI CTAG 9 cut(s) 38, 446, 723, 827, 896, 1043, 1073, 1260, 1304
StyD4I CCNGG 7 cut(s) 72, 77, 213, 222, 472, 870, 1111
StyI CCWWGG 1 cut(s) 287
TaaI ACNGT 5 cut(s) 91, 424, 589, 886, 997
TaiI ACGT 3 cut(s) 65, 655, 982
TaqI TCGA 6 cut(s) 229, 266, 276, 327, 615, 906
TasI AATT 7 cut(s) 242, 340, 715, 879, 1137, 1206, 1334
TauI GCSGC 1 cut(s) 497
TfiI GAWTC 5 cut(s) 460, 594, 793, 1013, 1066
Tru1I TTAA 1 cut(s) 1200
Tru9I TTAA 1 cut(s) 1200
TscAI CASTG 7 cut(s) 117, 372, 418, 429, 592, 937, 1015
TseFI GTSAC 2 cut(s) 409, 685
TseI GCWGC 5 cut(s) 29, 32, 83, 670, 950
Tsp45I GTSAC 2 cut(s) 409, 685
TspDTI ATGAA 4 cut(s) 154, 239, 1242, 1343
TspRI CASTG 7 cut(s) 117, 372, 418, 429, 592, 937, 1015
VpaK11BI GGWCC 1 cut(s) 259
XapI RAATTY 1 cut(s) 340
XceI RCATGY 2 cut(s) 518, 860
XcmI CCANNNNNNNNNTGG 1 cut(s) 1015
XmiI GTMKAC 1 cut(s) 749
XspI CTAG 9 cut(s) 38, 446, 723, 827, 896, 1043, 1073, 1260, 1304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.