Rorug02G0363300
MYB Family

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
46047143 .. 46050739
3597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0363300.1

Sequence Viewer

Length: 768 bp
ATGGCGCGCCTAATCCGACCTCTAAGAAACTCCATTTCTCGTCCCTCTTCTTCTTCCAAAATCCTATTTCCCCAGTTACCCAGTTTACGTCTTGCACCAGAAAAACAAGCCCCCCTCTTAAACCCCAAGCTTCCATCACCACAGAGCGCAAGAACTTACATCTCTGAAATGCGCAAATCGGCTTTCGAAGGCAACATGCTCAGACTCCTACGCAATGAAATCCAATATGAACTCGATCGCTCTCCTCCTAATCAGCCAGTTTCAGAATTCAACTCATTTACAGTTGACAACCGGTCTGGCGAGCAATGGATAAGCTTGAAGAGAAAATTTGGACATAATGAAGAGATAAAGATTGAAGCCACCATGTTTGATGGATCTGTTCCTATTACAAAATCCGGAGGCGGTGGTGTTGGTGGAGGCCTTGGAGAAGATGTGCAACTTCACATTACTATGGTTGTCAATATCTCCAAGGAGGAAGGTGGCAATGCATTGGAGATTATGTGCTCGGTATGGCCAGATACTATAGAGATCAACAAGCTATTCATACGAAAAACTGAGAACATGCCAGCTCAGCCCTATACGGGTCCTGAATTCAGGGAACTTGATGATGAGTTGCAAGACTCGCTTTACGAATTCTTAGAAGCAAGGGGTATAAATGATGATCTTGCTATTTTCTTGCACTCATATATGAAGAACAAAGATAAAACTGAGTTCATTAGATGGATGGGAACTGTGAAATCATATATTGAAAAGAAGAAGAGGTCATAA

Protein Analysis

255

Amino Acids

29.01

Weight (kDa)

7.78

Isoelectric Point (pI)

72.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 70 - 249 5.8e-31 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 173
AccII CGCG 1 cut(s) 7
AccIII TCCGGA 1 cut(s) 395
AciI CCGC 1 cut(s) 402
AclWI GGATC 1 cut(s) 382
AcoI YGGCCR 1 cut(s) 512
AcsI RAATTY 4 cut(s) 266, 326, 590, 632
AfiI CCNNNNNNNGG 1 cut(s) 581
AgeI ACCGGT 1 cut(s) 291
AgsI TTSAA 4 cut(s) 271, 319, 356, 749
AhdI GACNNNNNGTC 1 cut(s) 292
AluBI AGCT 4 cut(s) 130, 315, 538, 569
AluI AGCT 4 cut(s) 130, 315, 538, 569
Alw21I GWGCWC 1 cut(s) 506
AlwI GGATC 1 cut(s) 382
Aor13HI TCCGGA 1 cut(s) 395
AoxI GGCC 2 cut(s) 418, 512
ApoI RAATTY 4 cut(s) 266, 326, 590, 632
AscI GGCGCGCC 1 cut(s) 5
AsiGI ACCGGT 1 cut(s) 291
AspLEI GCGC 4 cut(s) 7, 9, 149, 174
AspS9I GGNCC 1 cut(s) 584
AsuHPI GGTGA 1 cut(s) 129
AsuII TTCGAA 1 cut(s) 186
AvaII GGWCC 1 cut(s) 584
BalI TGGCCA 1 cut(s) 514
Bbv12I GWGCWC 1 cut(s) 506
BccI CCATC 4 cut(s) 142, 365, 714, 718
BfmI CTRYAG 1 cut(s) 522
BlpI GCTNAGC 1 cut(s) 570
Bme18I GGWCC 1 cut(s) 584
BmeRI GACNNNNNGTC 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 584
BmiI GGNNCC 1 cut(s) 585
BmrI ACTGGG 2 cut(s) 67, 75
BmuI ACTGGG 2 cut(s) 67, 75
Bpu1102I GCTNAGC 1 cut(s) 570
Bpu14I TTCGAA 1 cut(s) 186
BsaJI CCNNGG 2 cut(s) 421, 468
BsaWI WCCGGW 2 cut(s) 291, 395
BsaXI ACNNNNNCTCC 4 cut(s) 417, 447, 485, 515
Bsc4I CCNNNNNNNGG 1 cut(s) 581
Bse118I RCCGGY 1 cut(s) 291
Bse1I ACTGG 3 cut(s) 73, 81, 257
Bse3DI GCAATG 3 cut(s) 220, 311, 490
BseAI TCCGGA 1 cut(s) 395
BseDI CCNNGG 2 cut(s) 421, 468
BseGI GGATG 1 cut(s) 729
BseLI CCNNNNNNNGG 1 cut(s) 581
BseMI GCAATG 3 cut(s) 220, 311, 490
BseMII CTCAG 4 cut(s) 214, 546, 584, 699
BseNI ACTGG 3 cut(s) 73, 81, 257
BsePI GCGCGC 1 cut(s) 5
BseRI GAGGAG 1 cut(s) 234
Bsh1236I CGCG 1 cut(s) 7
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 2 cut(s) 420, 514
BshTI ACCGGT 1 cut(s) 291
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 506
BsiSI CCGG 2 cut(s) 292, 396
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 581
BsmFI GGGAC 1 cut(s) 27
BsnI GGCC 2 cut(s) 420, 514
Bsp119I TTCGAA 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 506
Bsp13I TCCGGA 1 cut(s) 395
Bsp143I GATC 4 cut(s) 235, 374, 528, 661
Bsp1720I GCTNAGC 1 cut(s) 570
BspACI CCGC 1 cut(s) 402
BspANI GGCC 2 cut(s) 420, 514
BspCNI CTCAG 4 cut(s) 213, 547, 583, 700
BspEI TCCGGA 1 cut(s) 395
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 585
BspPI GGATC 1 cut(s) 382
BspT104I TTCGAA 1 cut(s) 186
BsrDI GCAATG 3 cut(s) 220, 311, 490
BsrFI RCCGGY 1 cut(s) 291
BsrI ACTGG 3 cut(s) 73, 81, 257
BssAI RCCGGY 1 cut(s) 291
BssECI CCNNGG 2 cut(s) 421, 468
BssHII GCGCGC 1 cut(s) 5
BssMI GATC 4 cut(s) 235, 374, 528, 661
BssT1I CCWWGG 2 cut(s) 421, 468
Bst4CI ACNGT 2 cut(s) 283, 733
Bst6I CTCTTC 4 cut(s) 52, 314, 336, 752
BstBI TTCGAA 1 cut(s) 186
BstC8I GCNNGC 3 cut(s) 7, 302, 567
BstDEI CTNAG 6 cut(s) 23, 200, 555, 570, 637, 708
BstF5I GGATG 1 cut(s) 729
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 4 cut(s) 7, 9, 149, 174
BstKTI GATC 4 cut(s) 238, 377, 531, 664
BstMBI GATC 4 cut(s) 235, 374, 528, 661
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 2 cut(s) 571, 622
BstNSI RCATGY 2 cut(s) 199, 565
BstSFI CTRYAG 1 cut(s) 522
BstUI CGCG 1 cut(s) 7
BstX2I RGATCY 1 cut(s) 374
BstYI RGATCY 1 cut(s) 374
BsuRI GGCC 2 cut(s) 420, 514
BtsCI GGATG 1 cut(s) 729
Cac8I GCNNGC 3 cut(s) 7, 302, 567
CfoI GCGC 4 cut(s) 7, 9, 149, 174
Cfr10I RCCGGY 1 cut(s) 291
Cfr13I GGNCC 1 cut(s) 584
CspAI ACCGGT 1 cut(s) 291
CspCI CAANNNNNGTGG 2 cut(s) 349, 384
CviAII CATG 3 cut(s) 196, 364, 562
DdeI CTNAG 6 cut(s) 23, 200, 555, 570, 637, 708
DpnI GATC 4 cut(s) 237, 376, 530, 663
DpnII GATC 4 cut(s) 235, 374, 528, 661
DriI GACNNNNNGTC 1 cut(s) 292
EaeI YGGCCR 1 cut(s) 512
Eam1104I CTCTTC 4 cut(s) 52, 314, 336, 752
Eam1105I GACNNNNNGTC 1 cut(s) 292
EarI CTCTTC 4 cut(s) 52, 314, 336, 752
Eco130I CCWWGG 2 cut(s) 421, 468
Eco147I AGGCCT 1 cut(s) 420
Eco47I GGWCC 1 cut(s) 584
EcoO109I RGGNCCY 1 cut(s) 584
EcoRI GAATTC 3 cut(s) 266, 590, 632
EcoT14I CCWWGG 2 cut(s) 421, 468
EcoT22I ATGCAT 1 cut(s) 490
ErhI CCWWGG 2 cut(s) 421, 468
FaeI CATG 3 cut(s) 199, 367, 565
FalI AAGNNNNNCTT 2 cut(s) 609, 641
FaqI GGGAC 1 cut(s) 27
FatI CATG 3 cut(s) 195, 363, 561
FokI GGATG 1 cut(s) 736
FspI TGCGCA 1 cut(s) 173
GlaI GCGC 4 cut(s) 6, 8, 148, 173
HaeIII GGCC 2 cut(s) 420, 514
HapII CCGG 2 cut(s) 292, 396
HhaI GCGC 4 cut(s) 7, 9, 149, 174
Hin1II CATG 3 cut(s) 199, 367, 565
Hin6I GCGC 4 cut(s) 5, 7, 147, 172
HinP1I GCGC 4 cut(s) 5, 7, 147, 172
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HindIII AAGCTT 2 cut(s) 128, 313
HinfI GANTC 2 cut(s) 204, 620
HpaII CCGG 2 cut(s) 292, 396
HphI GGTGA 1 cut(s) 129
Hpy166II GTNNAC 2 cut(s) 86, 286
Hpy188I TCNGA 4 cut(s) 17, 166, 203, 265
Hpy188III TCNNGA 2 cut(s) 396, 587
Hpy8I GTNNAC 2 cut(s) 86, 286
HpyAV CCTTC 2 cut(s) 182, 470
HpyCH4III ACNGT 2 cut(s) 283, 733
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 5 cut(s) 95, 436, 488, 616, 679
HpyF10VI GCNNNNNNNGC 2 cut(s) 571, 622
HpyF3I CTNAG 6 cut(s) 23, 200, 555, 570, 637, 708
HpySE526I ACGT 1 cut(s) 88
Hsp92II CATG 3 cut(s) 199, 367, 565
HspAI GCGC 4 cut(s) 5, 7, 147, 172
Kpn2I TCCGGA 1 cut(s) 395
Kzo9I GATC 4 cut(s) 235, 374, 528, 661
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 1 cut(s) 75
MalI GATC 4 cut(s) 237, 376, 530, 663
MboI GATC 4 cut(s) 235, 374, 528, 661
MboII GAAGA 8 cut(s) 39, 42, 45, 331, 353, 440, 703, 766
MflI RGATCY 1 cut(s) 374
MhlI GDGCHC 1 cut(s) 506
MlsI TGGCCA 1 cut(s) 514
MluCI AATT 4 cut(s) 266, 326, 590, 632
MluNI TGGCCA 1 cut(s) 514
MlyI GAGTC 2 cut(s) 198, 614
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 8 cut(s) 30, 55, 125, 255, 392, 410, 466, 753
Mox20I TGGCCA 1 cut(s) 514
Mph1103I ATGCAT 1 cut(s) 490
MroI TCCGGA 1 cut(s) 395
MscI TGGCCA 1 cut(s) 514
MseI TTAA 1 cut(s) 119
MslI CAYNNNNRTG 1 cut(s) 449
Msp20I TGGCCA 1 cut(s) 514
MspI CCGG 2 cut(s) 292, 396
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 2 cut(s) 571, 622
NdeII GATC 4 cut(s) 235, 374, 528, 661
NlaIII CATG 3 cut(s) 199, 367, 565
NlaIV GGNNCC 1 cut(s) 585
NsbI TGCGCA 1 cut(s) 173
NsiI ATGCAT 1 cut(s) 490
NspI RCATGY 2 cut(s) 199, 565
NspV TTCGAA 1 cut(s) 186
PalAI GGCGCGCC 1 cut(s) 5
PauI GCGCGC 1 cut(s) 5
PceI AGGCCT 1 cut(s) 420
PinAI ACCGGT 1 cut(s) 291
Ple19I CGATCG 1 cut(s) 238
PleI GAGTC 2 cut(s) 198, 614
PpsI GAGTC 2 cut(s) 198, 614
PpuMI RGGWCCY 1 cut(s) 584
Psp5II RGGWCCY 1 cut(s) 584
PspN4I GGNNCC 1 cut(s) 585
PspPI GGNCC 1 cut(s) 584
PspPPI RGGWCCY 1 cut(s) 584
PsuI RGATCY 1 cut(s) 374
PteI GCGCGC 1 cut(s) 5
PvuI CGATCG 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 449
SaqAI TTAA 1 cut(s) 119
Sau3AI GATC 4 cut(s) 235, 374, 528, 661
Sau96I GGNCC 1 cut(s) 584
SchI GAGTC 2 cut(s) 198, 614
SduI GDGCHC 1 cut(s) 506
SetI ASST 8 cut(s) 22, 91, 132, 317, 481, 540, 571, 764
SfcI CTRYAG 1 cut(s) 522
SfuI TTCGAA 1 cut(s) 186
SgsI GGCGCGCC 1 cut(s) 5
SinI GGWCC 1 cut(s) 584
SmiMI CAYNNNNRTG 1 cut(s) 449
Sse9I AATT 4 cut(s) 266, 326, 590, 632
SseBI AGGCCT 1 cut(s) 420
SsiI CCGC 1 cut(s) 402
StuI AGGCCT 1 cut(s) 420
StyI CCWWGG 2 cut(s) 421, 468
TaaI ACNGT 2 cut(s) 283, 733
TaiI ACGT 1 cut(s) 91
TaqI TCGA 2 cut(s) 186, 234
TasI AATT 4 cut(s) 266, 326, 590, 632
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TspDTI ATGAA 6 cut(s) 231, 243, 354, 532, 703, 704
VpaK11BI GGWCC 1 cut(s) 584
XapI RAATTY 4 cut(s) 266, 326, 590, 632
XceI RCATGY 2 cut(s) 199, 565
Zsp2I ATGCAT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.