Rmu_co8372331.1_g000001

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8372331.1
OG0000109
Physical Location & Seq
Reverse (-)
1 .. 499
499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8372331.1_g000001.1.cds

Sequence Viewer

Length: 264 bp
atggttgatcatgtcactgctcgtctcgctgcggccttggccatctcggagaacggtcgaacgtcctttggcccggctggcgctgctgctgtgattgtggatggtggtccgcggttctttggtaagtgggtgcttgctattgcggagttcgacggcgtgcagaatgttgcggctgtcccgctcctctctgtgccggtttggattgagatcataggcctccctcctgctcttatcactgagggagctgatttacacgcaatttac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

88

Amino Acids

9.08

Weight (kDa)

4.73

Isoelectric Point (pI)

26.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 181
AccII CGCG 1 cut(s) 112
AciI CCGC 6 cut(s) 32, 110, 112, 143, 170, 179
AcoI YGGCCR 1 cut(s) 39
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
Alw26I GTCTC 1 cut(s) 29
AoxI GGCC 4 cut(s) 33, 39, 70, 214
ApeKI GCWGC 3 cut(s) 29, 83, 86
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 2 cut(s) 71, 107
AsuC2I CCSGG 1 cut(s) 74
AvaII GGWCC 1 cut(s) 107
BalI TGGCCA 1 cut(s) 41
BbvI GCAGC 3 cut(s) 16, 70, 73
BccI CCATC 2 cut(s) 50, 95
BceAI ACGGC 1 cut(s) 169
BclI TGATCA 1 cut(s) 7
BcnI CCSGG 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 29
BfoI RGCGCY 1 cut(s) 84
BglI GCCNNNNNGGC 1 cut(s) 78
BisI GCNGC 5 cut(s) 30, 33, 84, 87, 171
BlsI GCNGC 5 cut(s) 31, 34, 85, 88, 172
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 2 cut(s) 71, 107
BmrFI CCNGG 1 cut(s) 74
BpuMI CCSGG 1 cut(s) 74
BsaBI GATNNNNATC 1 cut(s) 206
BsaJI CCNNGG 2 cut(s) 36, 110
Bse118I RCCGGY 1 cut(s) 193
Bse8I GATNNNNATC 1 cut(s) 206
BseDI CCNNGG 2 cut(s) 36, 110
BseGI GGATG 1 cut(s) 106
BseJI GATNNNNATC 1 cut(s) 206
BseMII CTCAG 1 cut(s) 228
BseRI GAGGAG 1 cut(s) 173
BseXI GCAGC 3 cut(s) 16, 70, 73
BsgI GTGCAG 1 cut(s) 179
Bsh1236I CGCG 1 cut(s) 112
Bsh1285I CGRYCG 1 cut(s) 58
BshFI GGCC 4 cut(s) 35, 41, 72, 216
BsiEI CGRYCG 1 cut(s) 58
BsiSI CCGG 2 cut(s) 74, 194
BslFI GGGAC 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 29
BsmBI CGTCTC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 4 cut(s) 35, 41, 72, 216
Bsp143I GATC 2 cut(s) 7, 207
BspACI CCGC 6 cut(s) 32, 110, 112, 143, 170, 179
BspANI GGCC 4 cut(s) 35, 41, 72, 216
BspCNI CTCAG 1 cut(s) 229
BspFNI CGCG 1 cut(s) 112
BsrBI CCGCTC 1 cut(s) 181
BsrFI RCCGGY 1 cut(s) 193
BssAI RCCGGY 1 cut(s) 193
BssECI CCNNGG 2 cut(s) 36, 110
BssMI GATC 2 cut(s) 7, 207
BssT1I CCWWGG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 56
BstC8I GCNNGC 3 cut(s) 79, 135, 158
BstDEI CTNAG 1 cut(s) 237
BstDSI CCRYGG 1 cut(s) 110
BstF5I GGATG 1 cut(s) 106
BstFNI CGCG 1 cut(s) 112
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 2 cut(s) 10, 210
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 2 cut(s) 7, 207
BstMCI CGRYCG 1 cut(s) 58
BstMWI GCNNNNNNNGC 4 cut(s) 26, 38, 78, 83
BstSCI CCNGG 1 cut(s) 72
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 3 cut(s) 16, 70, 73
BsuRI GGCC 4 cut(s) 35, 41, 72, 216
BtgI CCRYGG 1 cut(s) 110
BtsCI GGATG 1 cut(s) 106
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 2 cut(s) 15, 234
Cac8I GCNNGC 3 cut(s) 79, 135, 158
CfoI GCGC 1 cut(s) 83
Cfr10I RCCGGY 1 cut(s) 193
Cfr13I GGNCC 2 cut(s) 71, 107
Cfr42I CCGCGG 1 cut(s) 113
CviAII CATG 1 cut(s) 11
CviJI RGCY 7 cut(s) 35, 41, 72, 77, 173, 216, 245
CviKI_1 RGCY 7 cut(s) 35, 41, 72, 77, 173, 216, 245
DdeI CTNAG 1 cut(s) 237
DpnI GATC 2 cut(s) 9, 209
DpnII GATC 2 cut(s) 7, 207
EaeI YGGCCR 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 36
Eco147I AGGCCT 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
Esp3I CGTCTC 1 cut(s) 29
FaeI CATG 1 cut(s) 14
FaiI YATR 2 cut(s) 12, 212
FaqI GGGAC 1 cut(s) 161
FatI CATG 1 cut(s) 10
FauI CCCGC 1 cut(s) 186
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 5 cut(s) 30, 33, 84, 87, 171
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 5 cut(s) 30, 33, 84, 87, 171
GlaI GCGC 1 cut(s) 82
GluI GCNGC 5 cut(s) 30, 33, 84, 87, 171
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 4 cut(s) 35, 41, 72, 216
HapII CCGG 2 cut(s) 74, 194
HhaI GCGC 1 cut(s) 83
Hin1II CATG 1 cut(s) 14
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HpaII CCGG 2 cut(s) 74, 194
Hpy188I TCNGA 1 cut(s) 49
Hpy99I CGWCG 1 cut(s) 155
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 38, 78, 83
HpyF3I CTNAG 1 cut(s) 237
HpySE526I ACGT 1 cut(s) 62
Hsp92II CATG 1 cut(s) 14
HspAI GCGC 1 cut(s) 81
Ksp22I TGATCA 1 cut(s) 7
KspI CCGCGG 1 cut(s) 113
Kzo9I GATC 2 cut(s) 7, 207
LmnI GCTCC 2 cut(s) 186, 242
LpnPI CCDG 4 cut(s) 63, 87, 207, 237
Lsp1109I GCAGC 3 cut(s) 16, 70, 73
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 1 cut(s) 13
MalI GATC 2 cut(s) 9, 209
MbiI CCGCTC 1 cut(s) 181
MboI GATC 2 cut(s) 7, 207
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 1 cut(s) 258
MluNI TGGCCA 1 cut(s) 41
MnlI CCTC 4 cut(s) 194, 227, 231, 232
Mox20I TGGCCA 1 cut(s) 41
MscI TGGCCA 1 cut(s) 41
Msp20I TGGCCA 1 cut(s) 41
MspA1I CMGCKG 1 cut(s) 112
MspI CCGG 2 cut(s) 74, 194
MspR9I CCNGG 1 cut(s) 74
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 4 cut(s) 26, 38, 78, 83
NciI CCSGG 1 cut(s) 74
NdeII GATC 2 cut(s) 7, 207
NlaIII CATG 1 cut(s) 14
NmuCI GTSAC 1 cut(s) 13
PceI AGGCCT 1 cut(s) 216
PkrI GCNGC 5 cut(s) 31, 34, 85, 88, 172
PspPI GGNCC 2 cut(s) 71, 107
SacII CCGCGG 1 cut(s) 113
SatI GCNGC 5 cut(s) 30, 33, 84, 87, 171
Sau3AI GATC 2 cut(s) 7, 207
Sau96I GGNCC 2 cut(s) 71, 107
ScrFI CCNGG 1 cut(s) 74
SetI ASST 2 cut(s) 65, 247
Sfr303I CCGCGG 1 cut(s) 113
SgrBI CCGCGG 1 cut(s) 113
SinI GGWCC 1 cut(s) 107
Sse9I AATT 1 cut(s) 258
SseBI AGGCCT 1 cut(s) 216
SsiI CCGC 6 cut(s) 32, 110, 112, 143, 170, 179
StuI AGGCCT 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 56
TaiI ACGT 1 cut(s) 65
TaqI TCGA 2 cut(s) 58, 150
TasI AATT 1 cut(s) 258
TauI GCSGC 2 cut(s) 35, 173
TscAI CASTG 2 cut(s) 22, 241
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 3 cut(s) 29, 83, 86
Tsp45I GTSAC 1 cut(s) 13
TspRI CASTG 2 cut(s) 22, 241
VpaK11BI GGWCC 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.