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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 86 |
| AcsI | RAATTY | 2 cut(s) | 6, 132 |
| AcuI | CTGAAG | 1 cut(s) | 176 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 82, 115, 392 |
| AgeI | ACCGGT | 1 cut(s) | 163 |
| AgsI | TTSAA | 1 cut(s) | 255 |
| AjnI | CCWGG | 1 cut(s) | 385 |
| AluBI | AGCT | 2 cut(s) | 101, 247 |
| AluI | AGCT | 2 cut(s) | 101, 247 |
| Alw21I | GWGCWC | 3 cut(s) | 103, 249, 280 |
| Alw26I | GTCTC | 1 cut(s) | 110 |
| Alw44I | GTGCAC | 1 cut(s) | 276 |
| AoxI | GGCC | 1 cut(s) | 394 |
| ApaLI | GTGCAC | 1 cut(s) | 276 |
| ApoI | RAATTY | 2 cut(s) | 6, 132 |
| AsiGI | ACCGGT | 1 cut(s) | 163 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 288 |
| AspLEI | GCGC | 1 cut(s) | 66 |
| AspS9I | GGNCC | 1 cut(s) | 395 |
| AsuC2I | CCSGG | 1 cut(s) | 96 |
| AsuHPI | GGTGA | 1 cut(s) | 65 |
| AsuII | TTCGAA | 1 cut(s) | 300 |
| BaeGI | GKGCMC | 1 cut(s) | 280 |
| BanII | GRGCYC | 2 cut(s) | 103, 249 |
| Bbv12I | GWGCWC | 3 cut(s) | 103, 249, 280 |
| BccI | CCATC | 2 cut(s) | 299, 370 |
| BciT130I | CCWGG | 1 cut(s) | 387 |
| BcnI | CCSGG | 1 cut(s) | 96 |
| BcoDI | GTCTC | 1 cut(s) | 110 |
| BfaI | CTAG | 1 cut(s) | 281 |
| BfoI | RGCGCY | 1 cut(s) | 67 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 402 |
| BglII | AGATCT | 1 cut(s) | 140 |
| BisI | GCNGC | 1 cut(s) | 87 |
| BlsI | GCNGC | 1 cut(s) | 88 |
| Bme1390I | CCNGG | 2 cut(s) | 96, 387 |
| BmgT120I | GGNCC | 1 cut(s) | 395 |
| BmrFI | CCNGG | 2 cut(s) | 96, 387 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 90, 122 |
| Bpu14I | TTCGAA | 1 cut(s) | 300 |
| BpuMI | CCSGG | 1 cut(s) | 96 |
| BsaJI | CCNNGG | 2 cut(s) | 80, 240 |
| BsaWI | WCCGGW | 1 cut(s) | 163 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 82, 115, 392 |
| Bse118I | RCCGGY | 1 cut(s) | 163 |
| BseBI | CCWGG | 1 cut(s) | 387 |
| BseDI | CCNNGG | 2 cut(s) | 80, 240 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 82, 115, 392 |
| BseMII | CTCAG | 2 cut(s) | 105, 416 |
| BseSI | GKGCMC | 1 cut(s) | 280 |
| Bsh1285I | CGRYCG | 1 cut(s) | 366 |
| BshFI | GGCC | 1 cut(s) | 396 |
| BshTI | ACCGGT | 1 cut(s) | 163 |
| BsiEI | CGRYCG | 1 cut(s) | 366 |
| BsiHKAI | GWGCWC | 3 cut(s) | 103, 249, 280 |
| BsiSI | CCGG | 2 cut(s) | 96, 164 |
| BslFI | GGGAC | 1 cut(s) | 158 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 82, 115, 392 |
| BsmAI | GTCTC | 1 cut(s) | 110 |
| BsmBI | CGTCTC | 1 cut(s) | 110 |
| BsmFI | GGGAC | 1 cut(s) | 158 |
| BsnI | GGCC | 1 cut(s) | 396 |
| Bsp119I | TTCGAA | 1 cut(s) | 300 |
| Bsp1286I | GDGCHC | 3 cut(s) | 103, 249, 280 |
| Bsp143I | GATC | 3 cut(s) | 110, 140, 363 |
| Bsp19I | CCATGG | 1 cut(s) | 80 |
| BspACI | CCGC | 1 cut(s) | 86 |
| BspANI | GGCC | 1 cut(s) | 396 |
| BspCNI | CTCAG | 2 cut(s) | 106, 417 |
| BspT104I | TTCGAA | 1 cut(s) | 300 |
| BsrFI | RCCGGY | 1 cut(s) | 163 |
| BssAI | RCCGGY | 1 cut(s) | 163 |
| BssECI | CCNNGG | 2 cut(s) | 80, 240 |
| BssMI | GATC | 3 cut(s) | 110, 140, 363 |
| BssT1I | CCWWGG | 2 cut(s) | 80, 240 |
| Bst2UI | CCWGG | 1 cut(s) | 387 |
| BstBI | TTCGAA | 1 cut(s) | 300 |
| BstDEI | CTNAG | 2 cut(s) | 114, 425 |
| BstDSI | CCRYGG | 1 cut(s) | 80 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 390 |
| BstH2I | RGCGCY | 1 cut(s) | 67 |
| BstHHI | GCGC | 1 cut(s) | 66 |
| BstKTI | GATC | 3 cut(s) | 113, 143, 366 |
| BstMAI | GTCTC | 1 cut(s) | 110 |
| BstMBI | GATC | 3 cut(s) | 110, 140, 363 |
| BstMCI | CGRYCG | 1 cut(s) | 366 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 402 |
| BstNI | CCWGG | 1 cut(s) | 387 |
| BstSCI | CCNGG | 2 cut(s) | 94, 385 |
| BstSLI | GKGCMC | 1 cut(s) | 280 |
| BstX2I | RGATCY | 1 cut(s) | 140 |
| BstYI | RGATCY | 1 cut(s) | 140 |
| BsuRI | GGCC | 1 cut(s) | 396 |
| BtgI | CCRYGG | 1 cut(s) | 80 |
| CfoI | GCGC | 1 cut(s) | 66 |
| Cfr10I | RCCGGY | 1 cut(s) | 163 |
| Cfr13I | GGNCC | 1 cut(s) | 395 |
| CspAI | ACCGGT | 1 cut(s) | 163 |
| CviAII | CATG | 1 cut(s) | 81 |
| CviJI | RGCY | 7 cut(s) | 30, 36, 89, 101, 247, 396, 405 |
| CviKI_1 | RGCY | 7 cut(s) | 30, 36, 89, 101, 247, 396, 405 |
| DdeI | CTNAG | 2 cut(s) | 114, 425 |
| DpnI | GATC | 3 cut(s) | 112, 142, 365 |
| DpnII | GATC | 3 cut(s) | 110, 140, 363 |
| Ecl136II | GAGCTC | 2 cut(s) | 101, 247 |
| Eco130I | CCWWGG | 2 cut(s) | 80, 240 |
| Eco24I | GRGCYC | 2 cut(s) | 103, 249 |
| Eco32I | GATATC | 1 cut(s) | 431 |
| Eco53kI | GAGCTC | 2 cut(s) | 101, 247 |
| Eco57I | CTGAAG | 1 cut(s) | 176 |
| EcoICRI | GAGCTC | 2 cut(s) | 101, 247 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 390 |
| EcoO109I | RGGNCCY | 1 cut(s) | 395 |
| EcoRII | CCWGG | 1 cut(s) | 385 |
| EcoRV | GATATC | 1 cut(s) | 431 |
| EcoT14I | CCWWGG | 2 cut(s) | 80, 240 |
| EcoT38I | GRGCYC | 2 cut(s) | 103, 249 |
| ErhI | CCWWGG | 2 cut(s) | 80, 240 |
| Esp3I | CGTCTC | 1 cut(s) | 110 |
| FaeI | CATG | 1 cut(s) | 84 |
| FaiI | YATR | 7 cut(s) | 14, 23, 82, 231, 233, 235, 374 |
| FaqI | GGGAC | 1 cut(s) | 158 |
| FatI | CATG | 1 cut(s) | 80 |
| Fnu4HI | GCNGC | 1 cut(s) | 87 |
| FriOI | GRGCYC | 2 cut(s) | 103, 249 |
| Fsp4HI | GCNGC | 1 cut(s) | 87 |
| FspBI | CTAG | 1 cut(s) | 281 |
| GlaI | GCGC | 1 cut(s) | 65 |
| GluI | GCNGC | 1 cut(s) | 87 |
| HaeII | RGCGCY | 1 cut(s) | 67 |
| HaeIII | GGCC | 1 cut(s) | 396 |
| HapII | CCGG | 2 cut(s) | 96, 164 |
| HhaI | GCGC | 1 cut(s) | 66 |
| Hin1II | CATG | 1 cut(s) | 84 |
| Hin6I | GCGC | 1 cut(s) | 64 |
| HinP1I | GCGC | 1 cut(s) | 64 |
| HinfI | GANTC | 4 cut(s) | 55, 119, 198, 335 |
| HpaII | CCGG | 2 cut(s) | 96, 164 |
| HphI | GGTGA | 1 cut(s) | 65 |
| Hpy166II | GTNNAC | 1 cut(s) | 278 |
| Hpy188I | TCNGA | 4 cut(s) | 110, 115, 368, 426 |
| Hpy188III | TCNNGA | 1 cut(s) | 138 |
| Hpy8I | GTNNAC | 1 cut(s) | 278 |
| HpyAV | CCTTC | 1 cut(s) | 223 |
| HpyCH4V | TGCA | 1 cut(s) | 278 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 402 |
| HpyF3I | CTNAG | 2 cut(s) | 114, 425 |
| Hsp92II | CATG | 1 cut(s) | 84 |
| HspAI | GCGC | 1 cut(s) | 64 |
| Kzo9I | GATC | 3 cut(s) | 110, 140, 363 |
| LmnI | GCTCC | 3 cut(s) | 98, 242, 244 |
| LpnPI | CCDG | 9 cut(s) | 109, 151, 177, 189, 234, 324, 372, 399, 411 |
| MaeI | CTAG | 1 cut(s) | 281 |
| MalI | GATC | 3 cut(s) | 112, 142, 365 |
| MboI | GATC | 3 cut(s) | 110, 140, 363 |
| MboII | GAAGA | 5 cut(s) | 143, 296, 314, 317, 431 |
| MflI | RGATCY | 1 cut(s) | 140 |
| MhlI | GDGCHC | 3 cut(s) | 103, 249, 280 |
| MluCI | AATT | 2 cut(s) | 6, 132 |
| MlyI | GAGTC | 3 cut(s) | 64, 113, 192 |
| MnlI | CCTC | 2 cut(s) | 109, 165 |
| MroXI | GAANNNNTTC | 1 cut(s) | 288 |
| MseI | TTAA | 1 cut(s) | 451 |
| MspI | CCGG | 2 cut(s) | 96, 164 |
| MspR9I | CCNGG | 2 cut(s) | 96, 387 |
| MvaI | CCWGG | 1 cut(s) | 387 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 402 |
| NciI | CCSGG | 1 cut(s) | 96 |
| NcoI | CCATGG | 1 cut(s) | 80 |
| NdeII | GATC | 3 cut(s) | 110, 140, 363 |
| NlaIII | CATG | 1 cut(s) | 84 |
| NspV | TTCGAA | 1 cut(s) | 300 |
| PdmI | GAANNNNTTC | 1 cut(s) | 288 |
| PfeI | GAWTC | 1 cut(s) | 335 |
| PinAI | ACCGGT | 1 cut(s) | 163 |
| PkrI | GCNGC | 1 cut(s) | 88 |
| Ple19I | CGATCG | 1 cut(s) | 366 |
| PleI | GAGTC | 3 cut(s) | 63, 113, 192 |
| PpsI | GAGTC | 3 cut(s) | 63, 113, 192 |
| Psp124BI | GAGCTC | 2 cut(s) | 103, 249 |
| Psp6I | CCWGG | 1 cut(s) | 385 |
| PspGI | CCWGG | 1 cut(s) | 385 |
| PspPI | GGNCC | 1 cut(s) | 395 |
| PsuI | RGATCY | 1 cut(s) | 140 |
| PvuI | CGATCG | 1 cut(s) | 366 |
| SacI | GAGCTC | 2 cut(s) | 103, 249 |
| SaqAI | TTAA | 1 cut(s) | 451 |
| SatI | GCNGC | 1 cut(s) | 87 |
| Sau3AI | GATC | 3 cut(s) | 110, 140, 363 |
| Sau96I | GGNCC | 1 cut(s) | 395 |
| SchI | GAGTC | 3 cut(s) | 64, 113, 192 |
| ScrFI | CCNGG | 2 cut(s) | 96, 387 |
| SduI | GDGCHC | 3 cut(s) | 103, 249, 280 |
| SetI | ASST | 2 cut(s) | 103, 249 |
| SfuI | TTCGAA | 1 cut(s) | 300 |
| Sse9I | AATT | 2 cut(s) | 6, 132 |
| SsiI | CCGC | 1 cut(s) | 86 |
| SspMI | CTAG | 1 cut(s) | 281 |
| SstI | GAGCTC | 2 cut(s) | 103, 249 |
| StyD4I | CCNGG | 2 cut(s) | 94, 385 |
| StyI | CCWWGG | 2 cut(s) | 80, 240 |
| TaqI | TCGA | 2 cut(s) | 300, 362 |
| TasI | AATT | 2 cut(s) | 6, 132 |
| TauI | GCSGC | 1 cut(s) | 89 |
| TfiI | GAWTC | 1 cut(s) | 335 |
| Tru1I | TTAA | 1 cut(s) | 451 |
| Tru9I | TTAA | 1 cut(s) | 451 |
| TspGWI | ACGGA | 1 cut(s) | 284 |
| VneI | GTGCAC | 1 cut(s) | 276 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 390 |
| XapI | RAATTY | 2 cut(s) | 6, 132 |
| XmnI | GAANNNNTTC | 1 cut(s) | 288 |
| XspI | CTAG | 1 cut(s) | 281 |