Rorug03G0289500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000109
Physical Location & Seq
Forward (+)
29399095 .. 29400588
1494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0289500.1

Sequence Viewer

Length: 1494 bp
ATGGTTCAGGATATTCTGTGGGCTTCTCTTCACTATGTACTTGAACCAGTTTTTATGCGTTGGCCGGCAAAAAGATTGAGGGAGAAGGCTTTGGACACTGTTATGCAGCACATTCACTATGAAGATGAAAATACTCGGTATATCTGCATTGGCCCTGTTAATAAGGTGTTAAATATGCTCTGTTGTTGGGCGGAGGATCCAAACTCAGAGGCATTCAAGTGGCATCTTCCAAGACTATATGATTATTTGTGGATCGCTGAAGATGGCATGAAAATGCAGGGCTACAATGGGAGCCAGGCATGGGATACTTCTTTTGCTGTGCAAGCAATAATATCTACTAACCTTGCTAAAGAATTTGGACCTACTTTAAGAAAAGCACATGAATACATAAAAGATTCTCAGGTCTTAGAAGATTGTCCTGGTGATCTAAACTTTTGGTATCGACACATTTCAAAAGGTGCTTGGCCATTCTCAACAGCAGATCATGGATGGCCTATCTCTGACTGCACGGCGGAAGGACTGAAGGCTGCCTTATTACTATCAACACTTCCAACAGAAACAGTTGGGGAATCATTGGATATGAAGAAATTATATGATGCCGTCAATGTTACCCTTTCCTTACAGAATGATGATGGTGGATTTGCAACTTATGAATTGACTAGATCATATAAGTGGTTGGAGCTAATCAACCCTGCAGAAACTTTTGGTGACATTGTAATAGATTATCCATATGTTGAGTGTACATCAGCAGCAATTCAAGCACTTACACTATTTAAGAAATTATATCCTGGACATAGGAGGGAAGAAATAGAAAACTGTATTGCTAATGCTGCAAAGTTCATTGAAAAGATGCAAGCAACAGATGGCTCTTGGTACGGTTCTTGGGGAGTCTGCTTCACCTATGCTGGGTGGTTTGGAATAAAGGGTTTGGTTGCTGCTGGAAGGACTAATGAAGACTGCTCTAGCATCCGTAAAGCATGTGATTTTTTGTTATCCAAAGAGCTTGCTTCTGGTGGATGGGGAGAAAGTTATCTATCATGTCAGAACAAGGTGTATTCAAATCTACAGGATAATAGGCCACATATAGTCAATACTGCATGGGCTATGTTGGCCCTGCTTGGTGCTGGGCAGGCAAAGAGAGACCCAACTCCATTGCACCGTGCAGCTAGGGTACTAATAAATTCTCAAATGGCAAATGGAGATTTTCCCCAGAAGGAGATCATGGGAGTTTTTAACAAGAACTGTATGATTAGCTATTCAGCATACCGAAACATTTTCCCCGTTTGGGCCCTTGGAGAATATCGTTGTCAGGTACTCAGGTATTGGAGGCCCTCTGAAATATGTCTTTGTTCAGCTTTTATCACTCGAGATAATGAATTGTTATCTGATCTGTATGAGATCTTTTCTCAAACGTGCTCAAATCAATCTAATTACTATGTGCTCAAAAAAAAAAATCTGATTAAATTTAGAAGTGATCTACTTATAGAGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

497

Amino Acids

56.71

Weight (kDa)

5.88

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_C PF13243 98 - 435 1.4e-49 Squalene-hopene cyclase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 191, 512
AclWI GGATC 3 cut(s) 191, 204, 260
AcoI YGGCCR 2 cut(s) 62, 464
AcsI RAATTY 3 cut(s) 353, 1180, 1463
AcuI CTGAAG 2 cut(s) 279, 542
AfaI GTAC 5 cut(s) 39, 742, 875, 1173, 1314
AfiI CCNNNNNNNGG 3 cut(s) 301, 906, 1285
AgsI TTSAA 6 cut(s) 44, 217, 453, 758, 845, 1059
AjnI CCWGG 3 cut(s) 294, 418, 787
AluBI AGCT 5 cut(s) 682, 1003, 1166, 1254, 1355
AluI AGCT 5 cut(s) 682, 1003, 1166, 1254, 1355
Alw21I GWGCWC 2 cut(s) 1418, 1443
Alw26I GTCTC 2 cut(s) 1134, 1481
AlwI GGATC 3 cut(s) 191, 204, 260
Ama87I CYCGRG 1 cut(s) 1365
AoxI GGCC 8 cut(s) 62, 151, 464, 491, 1076, 1110, 1287, 1328
ApaI GGGCCC 1 cut(s) 1291
ApeKI GCWGC 6 cut(s) 106, 527, 749, 830, 935, 1163
ApoI RAATTY 3 cut(s) 353, 1180, 1463
AspS9I GGNCC 6 cut(s) 152, 359, 1111, 1287, 1288, 1329
AsuHPI GGTGA 3 cut(s) 434, 719, 889
AvaI CYCGRG 1 cut(s) 1365
AvaII GGWCC 1 cut(s) 359
BaeGI GKGCMC 1 cut(s) 1291
BaeI ACNNNNGTAYC 2 cut(s) 1304, 1337
BalI TGGCCA 1 cut(s) 466
BamHI GGATCC 1 cut(s) 196
BanII GRGCYC 1 cut(s) 1291
BbsI GAAGAC 1 cut(s) 960
Bbv12I GWGCWC 2 cut(s) 1418, 1443
BbvI GCAGC 6 cut(s) 118, 514, 761, 817, 922, 1175
BccI CCATC 5 cut(s) 257, 483, 626, 857, 1011
BceAI ACGGC 2 cut(s) 525, 584
BciT130I CCWGG 3 cut(s) 296, 420, 789
BciVI GTATCC 1 cut(s) 298
BcoDI GTCTC 2 cut(s) 1134, 1481
BfaI CTAG 3 cut(s) 660, 963, 1167
BfmI CTRYAG 2 cut(s) 693, 1064
BfuI GTATCC 1 cut(s) 298
BglII AGATCT 1 cut(s) 1398
BisI GCNGC 6 cut(s) 107, 528, 750, 831, 936, 1164
BlsI GCNGC 6 cut(s) 108, 529, 751, 832, 937, 1165
Bme1390I CCNGG 3 cut(s) 296, 420, 789
Bme18I GGWCC 1 cut(s) 359
BmeT110I CYCGRG 1 cut(s) 1365
BmgT120I GGNCC 6 cut(s) 152, 359, 1111, 1287, 1288, 1329
BmiI GGNNCC 3 cut(s) 198, 293, 1289
BmrFI CCNGG 3 cut(s) 296, 420, 789
BmsI GCATC 4 cut(s) 232, 586, 840, 975
BpiI GAAGAC 1 cut(s) 960
BsaI GGTCTC 1 cut(s) 1134
BsaJI CCNNGG 1 cut(s) 1291
Bsc4I CCNNNNNNNGG 3 cut(s) 301, 906, 1285
Bse118I RCCGGY 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 1151
BseBI CCWGG 3 cut(s) 296, 420, 789
BseDI CCNNGG 1 cut(s) 1291
BseGI GGATG 3 cut(s) 494, 966, 1022
BseLI CCNNNNNNNGG 3 cut(s) 301, 906, 1285
BseMI GCAATG 1 cut(s) 1151
BseMII CTCAG 3 cut(s) 219, 413, 1330
BseNI ACTGG 1 cut(s) 47
BseSI GKGCMC 1 cut(s) 1291
BseXI GCAGC 6 cut(s) 118, 514, 761, 817, 922, 1175
BseYI CCCAGC 2 cut(s) 905, 1124
BsgI GTGCAG 2 cut(s) 490, 1182
BshFI GGCC 8 cut(s) 64, 153, 466, 493, 1078, 1112, 1289, 1330
BsiHKAI GWGCWC 2 cut(s) 1418, 1443
BsiHKCI CYCGRG 1 cut(s) 1365
BsiSI CCGG 1 cut(s) 65
BslI CCNNNNNNNGG 3 cut(s) 301, 906, 1285
BsmAI GTCTC 2 cut(s) 1134, 1481
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 8 cut(s) 64, 153, 466, 493, 1078, 1112, 1289, 1330
Bso31I GGTCTC 1 cut(s) 1134
BsoBI CYCGRG 1 cut(s) 1365
Bsp120I GGGCCC 1 cut(s) 1287
Bsp1286I GDGCHC 3 cut(s) 1291, 1418, 1443
Bsp1407I TGTACA 1 cut(s) 740
Bsp143I GATC 9 cut(s) 196, 252, 424, 481, 662, 1218, 1387, 1398, 1474
BspACI CCGC 2 cut(s) 191, 512
BspANI GGCC 8 cut(s) 64, 153, 466, 493, 1078, 1112, 1289, 1330
BspCNI CTCAG 3 cut(s) 218, 412, 1329
BspLI GGNNCC 3 cut(s) 198, 293, 1289
BspMAI CTGCAG 1 cut(s) 697
BspPI GGATC 3 cut(s) 191, 204, 260
BspTNI GGTCTC 1 cut(s) 1134
BsrDI GCAATG 1 cut(s) 1151
BsrFI RCCGGY 1 cut(s) 64
BsrGI TGTACA 1 cut(s) 740
BsrI ACTGG 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 1291
BssMI GATC 9 cut(s) 196, 252, 424, 481, 662, 1218, 1387, 1398, 1474
BssT1I CCWWGG 1 cut(s) 1291
Bst2UI CCWGG 3 cut(s) 296, 420, 789
Bst4CI ACNGT 6 cut(s) 100, 562, 818, 878, 1160, 1244
Bst6I CTCTTC 1 cut(s) 33
BstAUI TGTACA 1 cut(s) 740
BstC8I GCNNGC 5 cut(s) 66, 324, 855, 1005, 1131
BstDEI CTNAG 4 cut(s) 205, 399, 406, 1316
BstF5I GGATG 3 cut(s) 494, 966, 1022
BstKTI GATC 9 cut(s) 199, 255, 427, 484, 665, 1221, 1390, 1401, 1477
BstMAI GTCTC 2 cut(s) 1134, 1481
BstMBI GATC 9 cut(s) 196, 252, 424, 481, 662, 1218, 1387, 1398, 1474
BstMWI GCNNNNNNNGC 5 cut(s) 323, 758, 830, 1109, 1130
BstNI CCWGG 3 cut(s) 296, 420, 789
BstNSI RCATGY 1 cut(s) 981
BstSCI CCNGG 3 cut(s) 294, 418, 787
BstSFI CTRYAG 2 cut(s) 693, 1064
BstSLI GKGCMC 1 cut(s) 1291
BstV1I GCAGC 6 cut(s) 118, 514, 761, 817, 922, 1175
BstV2I GAAGAC 1 cut(s) 960
BstX2I RGATCY 2 cut(s) 196, 1398
BstYI RGATCY 2 cut(s) 196, 1398
BsuI GTATCC 1 cut(s) 298
BsuRI GGCC 8 cut(s) 64, 153, 466, 493, 1078, 1112, 1289, 1330
BtsCI GGATG 3 cut(s) 494, 966, 1022
BtsIMutI CAGTG 1 cut(s) 96
Cac8I GCNNGC 5 cut(s) 66, 324, 855, 1005, 1131
Cfr10I RCCGGY 1 cut(s) 64
Cfr13I GGNCC 6 cut(s) 152, 359, 1111, 1287, 1288, 1329
Csp6I GTAC 5 cut(s) 38, 741, 874, 1172, 1313
CviAII CATG 8 cut(s) 268, 300, 380, 485, 978, 1038, 1098, 1222
CviQI GTAC 5 cut(s) 38, 741, 874, 1172, 1313
DdeI CTNAG 4 cut(s) 205, 399, 406, 1316
DpnI GATC 9 cut(s) 198, 254, 426, 483, 664, 1220, 1389, 1400, 1476
DpnII GATC 9 cut(s) 196, 252, 424, 481, 662, 1218, 1387, 1398, 1474
EaeI YGGCCR 2 cut(s) 62, 464
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
EciI GGCGGA 2 cut(s) 206, 527
Eco130I CCWWGG 1 cut(s) 1291
Eco24I GRGCYC 1 cut(s) 1291
Eco31I GGTCTC 1 cut(s) 1134
Eco47I GGWCC 1 cut(s) 359
Eco57I CTGAAG 2 cut(s) 279, 542
Eco88I CYCGRG 1 cut(s) 1365
EcoO109I RGGNCCY 2 cut(s) 1288, 1329
EcoRII CCWGG 3 cut(s) 294, 418, 787
EcoT14I CCWWGG 1 cut(s) 1291
EcoT38I GRGCYC 1 cut(s) 1291
ErhI CCWWGG 1 cut(s) 1291
FaeI CATG 8 cut(s) 271, 303, 383, 488, 981, 1041, 1101, 1225
FalI AAGNNNNNCTT 2 cut(s) 515, 547
FatI CATG 8 cut(s) 267, 299, 379, 484, 977, 1037, 1097, 1221
FauNDI CATATG 1 cut(s) 730
Fnu4HI GCNGC 6 cut(s) 107, 528, 750, 831, 936, 1164
FokI GGATG 3 cut(s) 501, 953, 1029
FriOI GRGCYC 1 cut(s) 1291
Fsp4HI GCNGC 6 cut(s) 107, 528, 750, 831, 936, 1164
FspBI CTAG 3 cut(s) 660, 963, 1167
GluI GCNGC 6 cut(s) 107, 528, 750, 831, 936, 1164
GsaI CCCAGC 2 cut(s) 909, 1128
HaeIII GGCC 8 cut(s) 64, 153, 466, 493, 1078, 1112, 1289, 1330
HapII CCGG 1 cut(s) 65
Hin1II CATG 8 cut(s) 271, 303, 383, 488, 981, 1041, 1101, 1225
HinfI GANTC 3 cut(s) 395, 569, 888
HpaII CCGG 1 cut(s) 65
HphI GGTGA 3 cut(s) 434, 719, 889
Hpy166II GTNNAC 1 cut(s) 741
Hpy188I TCNGA 6 cut(s) 208, 502, 1044, 1336, 1387, 1458
Hpy188III TCNNGA 2 cut(s) 8, 1367
Hpy8I GTNNAC 1 cut(s) 741
HpyAV CCTTC 5 cut(s) 79, 509, 517, 936, 1207
HpyCH4III ACNGT 6 cut(s) 100, 562, 818, 878, 1160, 1244
HpyCH4IV ACGT 1 cut(s) 1412
HpyF10VI GCNNNNNNNGC 5 cut(s) 323, 758, 830, 1109, 1130
HpyF3I CTNAG 4 cut(s) 205, 399, 406, 1316
HpySE526I ACGT 1 cut(s) 1412
Hsp92II CATG 8 cut(s) 271, 303, 383, 488, 981, 1041, 1101, 1225
KroI GCCGGC 1 cut(s) 64
KroNI GCCGGC 1 cut(s) 66
Kzo9I GATC 9 cut(s) 196, 252, 424, 481, 662, 1218, 1387, 1398, 1474
LmnI GCTCC 2 cut(s) 291, 679
Lsp1109I GCAGC 6 cut(s) 118, 514, 761, 817, 922, 1175
LweI GCATC 4 cut(s) 232, 586, 840, 975
MaeI CTAG 3 cut(s) 660, 963, 1167
MaeII ACGT 1 cut(s) 1412
MaeIII GTNAC 2 cut(s) 607, 707
MalI GATC 9 cut(s) 198, 254, 426, 483, 664, 1220, 1389, 1400, 1476
MboI GATC 9 cut(s) 196, 252, 424, 481, 662, 1218, 1387, 1398, 1474
MboII GAAGA 8 cut(s) 20, 134, 218, 272, 422, 595, 815, 965
MflI RGATCY 2 cut(s) 196, 1398
MhlI GDGCHC 3 cut(s) 1291, 1418, 1443
MlsI TGGCCA 1 cut(s) 466
MluCI AATT 9 cut(s) 353, 587, 653, 753, 779, 1180, 1376, 1429, 1463
MluNI TGGCCA 1 cut(s) 466
MlyI GAGTC 1 cut(s) 897
MmeI TCCRAC 2 cut(s) 575, 657
MnlI CCTC 6 cut(s) 72, 187, 202, 792, 1320, 1342
Mox20I TGGCCA 1 cut(s) 466
MroNI GCCGGC 1 cut(s) 64
MscI TGGCCA 1 cut(s) 466
MseI TTAA 6 cut(s) 159, 170, 368, 774, 1233, 1461
MslI CAYNNNNRTG 4 cut(s) 101, 217, 272, 670
Msp20I TGGCCA 1 cut(s) 466
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 3 cut(s) 296, 420, 789
Mva1269I GAATGC 1 cut(s) 212
MvaI CCWGG 3 cut(s) 296, 420, 789
MwoI GCNNNNNNNGC 5 cut(s) 323, 758, 830, 1109, 1130
NaeI GCCGGC 1 cut(s) 66
NdeI CATATG 1 cut(s) 730
NdeII GATC 9 cut(s) 196, 252, 424, 481, 662, 1218, 1387, 1398, 1474
NgoMIV GCCGGC 1 cut(s) 64
NlaIII CATG 8 cut(s) 271, 303, 383, 488, 981, 1041, 1101, 1225
NlaIV GGNNCC 3 cut(s) 198, 293, 1289
NmuCI GTSAC 1 cut(s) 707
NspI RCATGY 1 cut(s) 981
PaeR7I CTCGAG 1 cut(s) 1365
PctI GAATGC 1 cut(s) 212
PdiI GCCGGC 1 cut(s) 66
PfeI GAWTC 2 cut(s) 395, 569
PfoI TCCNGGA 1 cut(s) 787
PkrI GCNGC 6 cut(s) 108, 529, 751, 832, 937, 1165
PleI GAGTC 1 cut(s) 896
PpsI GAGTC 1 cut(s) 896
Psp6I CCWGG 3 cut(s) 294, 418, 787
PspFI CCCAGC 2 cut(s) 905, 1124
PspGI CCWGG 3 cut(s) 294, 418, 787
PspN4I GGNNCC 3 cut(s) 198, 293, 1289
PspOMI GGGCCC 1 cut(s) 1287
PspPI GGNCC 6 cut(s) 152, 359, 1111, 1287, 1288, 1329
PstI CTGCAG 1 cut(s) 697
PsuI RGATCY 2 cut(s) 196, 1398
RsaI GTAC 5 cut(s) 39, 742, 875, 1173, 1314
RsaNI GTAC 5 cut(s) 38, 741, 874, 1172, 1313
RseI CAYNNNNRTG 4 cut(s) 101, 217, 272, 670
SaqAI TTAA 6 cut(s) 159, 170, 368, 774, 1233, 1461
SatI GCNGC 6 cut(s) 107, 528, 750, 831, 936, 1164
Sau3AI GATC 9 cut(s) 196, 252, 424, 481, 662, 1218, 1387, 1398, 1474
Sau96I GGNCC 6 cut(s) 152, 359, 1111, 1287, 1288, 1329
SchI GAGTC 1 cut(s) 897
ScrFI CCNGG 3 cut(s) 296, 420, 789
SduI GDGCHC 3 cut(s) 1291, 1418, 1443
SfaNI GCATC 4 cut(s) 232, 586, 840, 975
SfcI CTRYAG 2 cut(s) 693, 1064
Sfr274I CTCGAG 1 cut(s) 1365
SinI GGWCC 1 cut(s) 359
SlaI CTCGAG 1 cut(s) 1365
SmiMI CAYNNNNRTG 4 cut(s) 101, 217, 272, 670
SmlI CTYRAG 1 cut(s) 1365
SmoI CTYRAG 1 cut(s) 1365
Sse9I AATT 9 cut(s) 353, 587, 653, 753, 779, 1180, 1376, 1429, 1463
SsiI CCGC 2 cut(s) 191, 512
SspMI CTAG 3 cut(s) 660, 963, 1167
StyD4I CCNGG 3 cut(s) 294, 418, 787
StyI CCWWGG 1 cut(s) 1291
TaaI ACNGT 6 cut(s) 100, 562, 818, 878, 1160, 1244
TaiI ACGT 1 cut(s) 1415
TaqI TCGA 2 cut(s) 442, 1366
TasI AATT 9 cut(s) 353, 587, 653, 753, 779, 1180, 1376, 1429, 1463
TatI WGTACW 2 cut(s) 37, 740
TfiI GAWTC 2 cut(s) 395, 569
Tru1I TTAA 6 cut(s) 159, 170, 368, 774, 1233, 1461
Tru9I TTAA 6 cut(s) 159, 170, 368, 774, 1233, 1461
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 1 cut(s) 707
TseI GCWGC 6 cut(s) 106, 527, 749, 830, 935, 1163
Tsp45I GTSAC 1 cut(s) 707
TspDTI ATGAA 9 cut(s) 135, 141, 284, 396, 596, 666, 829, 966, 1389
TspGWI ACGGA 1 cut(s) 959
TspRI CASTG 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 359
XapI RAATTY 3 cut(s) 353, 1180, 1463
XceI RCATGY 1 cut(s) 981
XhoI CTCGAG 1 cut(s) 1365
XspI CTAG 3 cut(s) 660, 963, 1167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.