RLG00000023424

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000109
Physical Location & Seq
Reverse (-)
23413606 .. 23414313
708 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023424

Sequence Viewer

Length: 612 bp
ATGCTGCAACATTCACGTTCGGGTTGTGCTGGGCCGGCGGTAGTGACCACCATTGGCCATAACCCTAACCCTAACTCAGCTAGGGCTTCATCATCCGTTGGTCAGTCTGCTGCGATTTTGGCGGAGGTTTTGGCTCGATCTCAGGCGCCGAATCTGTTTTCTGCTACGCCCAGATCGCTCATTCTAGGTATATCGAGGTCAGCTTTAGCTACACATGTGGCAAAGATCCCCGTTTCAGTTACTGTACCCAAGCAAGTGCTGGTTGATGATAATATTGATGTTTCCATCACTGGGAAGAAGAGAACTGCGGCTGTGGCTTTGGTGCAATATTCAAAGCGTAAAAGGTTTAGTATTGCGAAGGTTGGCCGGCCTCCAGGTCGCAAGAACAATCCCAAATCAACTGGTTTGAAGCCTAGGAAGCTGACTAGTGAGGAAGTCAAACCCCTCCGTAAGAGAAACTTTAAAGCAACTGATCTTCCTTCTCCTTCTCGGGAAGGCTGCATGGAAGAGGGTCCGGTCGGAGTTGAACCGCCATTGGTGGCGGTGCAGATTTCGTCCTCTAGCAAAGTGCCTGAACTGAAGGAAAGCATTCTCAAAAGTGCCCTAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

21.45

Weight (kDa)

10.5

Isoelectric Point (pI)

56.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 145
AciI CCGC 5 cut(s) 38, 122, 308, 530, 542
AclWI GGATC 1 cut(s) 220
AcoI YGGCCR 2 cut(s) 55, 364
AcuI CTGAAG 1 cut(s) 599
AcyI GRCGYC 1 cut(s) 146
AfaI GTAC 1 cut(s) 246
AfiI CCNNNNNNNGG 1 cut(s) 291
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 3 cut(s) 333, 409, 527
AhlI ACTAGT 1 cut(s) 425
AjnI CCWGG 1 cut(s) 373
AluBI AGCT 4 cut(s) 80, 203, 209, 421
AluI AGCT 4 cut(s) 80, 203, 209, 421
AlwI GGATC 1 cut(s) 220
AlwNI CAGNNNCTG 1 cut(s) 242
Ama87I CYCGRG 1 cut(s) 489
AoxI GGCC 4 cut(s) 32, 55, 364, 368
ApeKI GCWGC 3 cut(s) 4, 110, 498
Asp700I GAANNNNTTC 1 cut(s) 588
AspA2I CCTAGG 1 cut(s) 413
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 2 cut(s) 32, 512
AvaI CYCGRG 1 cut(s) 489
AvaII GGWCC 1 cut(s) 512
AvrII CCTAGG 1 cut(s) 413
BaeGI GKGCMC 1 cut(s) 604
BalI TGGCCA 1 cut(s) 57
BanI GGYRCC 1 cut(s) 145
BbvI GCAGC 2 cut(s) 97, 485
BccI CCATC 1 cut(s) 293
BciT130I CCWGG 1 cut(s) 375
BcuI ACTAGT 1 cut(s) 425
BfaI CTAG 7 cut(s) 81, 185, 414, 426, 561, 605, 610
BfoI RGCGCY 1 cut(s) 149
BisI GCNGC 4 cut(s) 5, 111, 309, 499
BlnI CCTAGG 1 cut(s) 413
BlsI GCNGC 4 cut(s) 6, 112, 310, 500
Bme1390I CCNGG 1 cut(s) 375
Bme18I GGWCC 1 cut(s) 512
BmeT110I CYCGRG 1 cut(s) 489
BmgT120I GGNCC 2 cut(s) 32, 512
BmiI GGNNCC 2 cut(s) 147, 513
BmrFI CCNGG 1 cut(s) 375
BmrI ACTGGG 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 300
BpmI CTGGAG 1 cut(s) 357
BsaHI GRCGYC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 413
BsaWI WCCGGW 1 cut(s) 514
Bsc4I CCNNNNNNNGG 1 cut(s) 291
Bse118I RCCGGY 2 cut(s) 34, 366
Bse1I ACTGG 2 cut(s) 295, 406
BseBI CCWGG 1 cut(s) 375
BseDI CCNNGG 1 cut(s) 413
BseGI GGATG 1 cut(s) 92
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMII CTCAG 2 cut(s) 90, 155
BseNI ACTGG 2 cut(s) 295, 406
BseSI GKGCMC 1 cut(s) 604
BseXI GCAGC 2 cut(s) 97, 485
BseYI CCCAGC 1 cut(s) 29
BsgI GTGCAG 1 cut(s) 566
Bsh1285I CGRYCG 1 cut(s) 519
BshFI GGCC 4 cut(s) 34, 57, 366, 370
BshNI GGYRCC 1 cut(s) 145
BsiEI CGRYCG 1 cut(s) 519
BsiHKCI CYCGRG 1 cut(s) 489
BsiSI CCGG 3 cut(s) 35, 367, 515
BslI CCNNNNNNNGG 1 cut(s) 291
BsmI GAATGC 1 cut(s) 588
BsnI GGCC 4 cut(s) 34, 57, 366, 370
BsoBI CYCGRG 1 cut(s) 489
Bsp1286I GDGCHC 1 cut(s) 604
Bsp143I GATC 4 cut(s) 137, 173, 225, 472
BspACI CCGC 5 cut(s) 38, 122, 308, 530, 542
BspANI GGCC 4 cut(s) 34, 57, 366, 370
BspCNI CTCAG 2 cut(s) 89, 154
BspLI GGNNCC 2 cut(s) 147, 513
BspPI GGATC 1 cut(s) 220
BspT107I GGYRCC 1 cut(s) 145
BsrFI RCCGGY 2 cut(s) 34, 366
BsrI ACTGG 2 cut(s) 295, 406
BssAI RCCGGY 2 cut(s) 34, 366
BssECI CCNNGG 1 cut(s) 413
BssMI GATC 4 cut(s) 137, 173, 225, 472
BssNI GRCGYC 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 413
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 2 cut(s) 293, 501
BstACI GRCGYC 1 cut(s) 146
BstC8I GCNNGC 2 cut(s) 36, 368
BstDEI CTNAG 2 cut(s) 76, 141
BstF5I GGATG 1 cut(s) 92
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 4 cut(s) 140, 176, 228, 475
BstMBI GATC 4 cut(s) 137, 173, 225, 472
BstMCI CGRYCG 1 cut(s) 519
BstMWI GCNNNNNNNGC 5 cut(s) 35, 119, 175, 314, 418
BstNI CCWGG 1 cut(s) 375
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 373
BstSLI GKGCMC 1 cut(s) 604
BstV1I GCAGC 2 cut(s) 97, 485
BstX2I RGATCY 1 cut(s) 225
BstYI RGATCY 1 cut(s) 225
BsuRI GGCC 4 cut(s) 34, 57, 366, 370
BtsCI GGATG 1 cut(s) 92
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 2 cut(s) 36, 368
CaiI CAGNNNCTG 1 cut(s) 242
CfoI GCGC 1 cut(s) 148
Cfr10I RCCGGY 2 cut(s) 34, 366
Cfr13I GGNCC 2 cut(s) 32, 512
Csp6I GTAC 1 cut(s) 245
CviAII CATG 2 cut(s) 215, 502
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 2 cut(s) 76, 141
DinI GGCGCC 1 cut(s) 147
DpnI GATC 4 cut(s) 139, 175, 227, 474
DpnII GATC 4 cut(s) 137, 173, 225, 472
DraI TTTAAA 1 cut(s) 463
EaeI YGGCCR 2 cut(s) 55, 364
Eam1104I CTCTTC 2 cut(s) 293, 501
EarI CTCTTC 2 cut(s) 293, 501
EciI GGCGGA 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 413
Eco47I GGWCC 1 cut(s) 512
Eco57I CTGAAG 1 cut(s) 599
Eco88I CYCGRG 1 cut(s) 489
EcoRII CCWGG 1 cut(s) 373
EcoT14I CCWWGG 1 cut(s) 413
EgeI GGCGCC 1 cut(s) 147
EheI GGCGCC 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 413
FaeI CATG 2 cut(s) 218, 505
FaiI YATR 4 cut(s) 60, 191, 216, 503
FalI AAGNNNNNCTT 2 cut(s) 443, 475
FatI CATG 2 cut(s) 214, 501
Fnu4HI GCNGC 4 cut(s) 5, 111, 309, 499
FokI GGATG 1 cut(s) 79
FseI GGCCGGCC 1 cut(s) 370
Fsp4HI GCNGC 4 cut(s) 5, 111, 309, 499
FspBI CTAG 7 cut(s) 81, 185, 414, 426, 561, 605, 610
GlaI GCGC 1 cut(s) 147
GluI GCNGC 4 cut(s) 5, 111, 309, 499
GsaI CCCAGC 1 cut(s) 33
GsuI CTGGAG 1 cut(s) 357
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 4 cut(s) 34, 57, 366, 370
HapII CCGG 3 cut(s) 35, 367, 515
HhaI GCGC 1 cut(s) 148
Hin1I GRCGYC 1 cut(s) 146
Hin1II CATG 2 cut(s) 218, 505
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HinfI GANTC 1 cut(s) 151
HpaII CCGG 3 cut(s) 35, 367, 515
Hpy188I TCNGA 1 cut(s) 521
Hpy188III TCNNGA 1 cut(s) 491
HpyAV CCTTC 5 cut(s) 352, 488, 489, 495, 574
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 4 cut(s) 7, 325, 501, 547
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 119, 175, 314, 418
HpyF3I CTNAG 2 cut(s) 76, 141
HpySE526I ACGT 1 cut(s) 16
Hsp92I GRCGYC 1 cut(s) 146
Hsp92II CATG 2 cut(s) 218, 505
HspAI GCGC 1 cut(s) 146
KasI GGCGCC 1 cut(s) 145
KroI GCCGGC 2 cut(s) 34, 366
KroNI GCCGGC 2 cut(s) 36, 368
Kzo9I GATC 4 cut(s) 137, 173, 225, 472
Lsp1109I GCAGC 2 cut(s) 97, 485
MaeI CTAG 7 cut(s) 81, 185, 414, 426, 561, 605, 610
MaeII ACGT 1 cut(s) 16
MaeIII GTNAC 2 cut(s) 43, 238
MalI GATC 4 cut(s) 139, 175, 227, 474
MboI GATC 4 cut(s) 137, 173, 225, 472
MboII GAAGA 4 cut(s) 307, 310, 467, 518
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 1 cut(s) 604
MlsI TGGCCA 1 cut(s) 57
MluNI TGGCCA 1 cut(s) 57
Mly113I GGCGCC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 499
MnlI CCTC 7 cut(s) 118, 189, 381, 424, 455, 502, 568
Mox20I TGGCCA 1 cut(s) 57
MroNI GCCGGC 2 cut(s) 34, 366
MroXI GAANNNNTTC 1 cut(s) 588
MscI TGGCCA 1 cut(s) 57
MseI TTAA 1 cut(s) 462
Msp20I TGGCCA 1 cut(s) 57
MspI CCGG 3 cut(s) 35, 367, 515
MspR9I CCNGG 1 cut(s) 375
Mva1269I GAATGC 1 cut(s) 588
MvaI CCWGG 1 cut(s) 375
MwoI GCNNNNNNNGC 5 cut(s) 35, 119, 175, 314, 418
NaeI GCCGGC 2 cut(s) 36, 368
NarI GGCGCC 1 cut(s) 146
NdeII GATC 4 cut(s) 137, 173, 225, 472
NgoMIV GCCGGC 2 cut(s) 34, 366
NlaIII CATG 2 cut(s) 218, 505
NlaIV GGNNCC 2 cut(s) 147, 513
NmuCI GTSAC 1 cut(s) 43
NspI RCATGY 1 cut(s) 218
PciI ACATGT 1 cut(s) 214
PctI GAATGC 1 cut(s) 588
PdiI GCCGGC 2 cut(s) 36, 368
PdmI GAANNNNTTC 1 cut(s) 588
PfeI GAWTC 1 cut(s) 151
PkrI GCNGC 4 cut(s) 6, 112, 310, 500
PluTI GGCGCC 1 cut(s) 149
PscI ACATGT 1 cut(s) 214
Psp6I CCWGG 1 cut(s) 373
PspFI CCCAGC 1 cut(s) 29
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 2 cut(s) 147, 513
PspPI GGNCC 2 cut(s) 32, 512
PstNI CAGNNNCTG 1 cut(s) 242
PsuI RGATCY 1 cut(s) 225
RigI GGCCGGCC 1 cut(s) 370
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 4 cut(s) 5, 111, 309, 499
Sau3AI GATC 4 cut(s) 137, 173, 225, 472
Sau96I GGNCC 2 cut(s) 32, 512
ScrFI CCNGG 1 cut(s) 375
SduI GDGCHC 1 cut(s) 604
SfoI GGCGCC 1 cut(s) 147
SinI GGWCC 1 cut(s) 512
SpeI ACTAGT 1 cut(s) 425
SsiI CCGC 5 cut(s) 38, 122, 308, 530, 542
SspDI GGCGCC 1 cut(s) 145
SspI AATATT 2 cut(s) 274, 329
SspMI CTAG 7 cut(s) 81, 185, 414, 426, 561, 605, 610
StyD4I CCNGG 1 cut(s) 373
StyI CCWWGG 1 cut(s) 413
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 1 cut(s) 19
TaqI TCGA 2 cut(s) 136, 194
TauI GCSGC 1 cut(s) 311
TfiI GAWTC 1 cut(s) 151
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 3 cut(s) 4, 110, 498
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 78
TspGWI ACGGA 2 cut(s) 85, 437
TspRI CASTG 1 cut(s) 295
VpaK11BI GGWCC 1 cut(s) 512
XceI RCATGY 1 cut(s) 218
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XmaJI CCTAGG 1 cut(s) 413
XmnI GAANNNNTTC 1 cut(s) 588
XspI CTAG 7 cut(s) 81, 185, 414, 426, 561, 605, 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.