60S ribosomal protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ribosomal_L7Ae | PF01248 | 1 - 57 | 8.7e-12 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 382 |
| AciI | CCGC | 4 cut(s) | 103, 268, 332, 421 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 144, 200 |
| AgsI | TTSAA | 1 cut(s) | 191 |
| AluBI | AGCT | 5 cut(s) | 57, 70, 322, 400, 404 |
| AluI | AGCT | 5 cut(s) | 57, 70, 322, 400, 404 |
| Alw26I | GTCTC | 2 cut(s) | 244, 384 |
| Aor13HI | TCCGGA | 1 cut(s) | 382 |
| AoxI | GGCC | 1 cut(s) | 269 |
| ApeKI | GCWGC | 1 cut(s) | 54 |
| AspLEI | GCGC | 1 cut(s) | 357 |
| AspS9I | GGNCC | 1 cut(s) | 148 |
| AsuHPI | GGTGA | 3 cut(s) | 204, 358, 436 |
| AsuNHI | GCTAGC | 1 cut(s) | 400 |
| AvaII | GGWCC | 1 cut(s) | 148 |
| BbsI | GAAGAC | 1 cut(s) | 401 |
| BbvI | GCAGC | 1 cut(s) | 66 |
| BclI | TGATCA | 1 cut(s) | 72 |
| BcoDI | GTCTC | 2 cut(s) | 244, 384 |
| BfaI | CTAG | 1 cut(s) | 401 |
| BisI | GCNGC | 3 cut(s) | 55, 269, 333 |
| BlsI | GCNGC | 3 cut(s) | 56, 270, 334 |
| Bme18I | GGWCC | 1 cut(s) | 148 |
| BmgT120I | GGNCC | 1 cut(s) | 148 |
| BmiI | GGNNCC | 1 cut(s) | 149 |
| BmsI | GCATC | 2 cut(s) | 301, 344 |
| BmtI | GCTAGC | 1 cut(s) | 404 |
| BpiI | GAAGAC | 1 cut(s) | 401 |
| BsaBI | GATNNNNATC | 1 cut(s) | 77 |
| BsaI | GGTCTC | 2 cut(s) | 244, 384 |
| BsaJI | CCNNGG | 2 cut(s) | 138, 314 |
| BsaWI | WCCGGW | 1 cut(s) | 382 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 144, 200 |
| Bse3DI | GCAATG | 1 cut(s) | 440 |
| Bse8I | GATNNNNATC | 1 cut(s) | 77 |
| BseAI | TCCGGA | 1 cut(s) | 382 |
| BseDI | CCNNGG | 2 cut(s) | 138, 314 |
| BseGI | GGATG | 1 cut(s) | 397 |
| BseJI | GATNNNNATC | 1 cut(s) | 77 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 144, 200 |
| BseMI | GCAATG | 1 cut(s) | 440 |
| BseXI | GCAGC | 1 cut(s) | 66 |
| BshFI | GGCC | 1 cut(s) | 271 |
| BsiSI | CCGG | 1 cut(s) | 383 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 144, 200 |
| BsmAI | GTCTC | 2 cut(s) | 244, 384 |
| BsnI | GGCC | 1 cut(s) | 271 |
| Bso31I | GGTCTC | 2 cut(s) | 244, 384 |
| Bsp13I | TCCGGA | 1 cut(s) | 382 |
| Bsp143I | GATC | 2 cut(s) | 72, 114 |
| Bsp19I | CCATGG | 1 cut(s) | 314 |
| BspACI | CCGC | 4 cut(s) | 103, 268, 332, 421 |
| BspANI | GGCC | 1 cut(s) | 271 |
| BspEI | TCCGGA | 1 cut(s) | 382 |
| BspLI | GGNNCC | 1 cut(s) | 149 |
| BspOI | GCTAGC | 1 cut(s) | 404 |
| BspTNI | GGTCTC | 2 cut(s) | 244, 384 |
| BsrDI | GCAATG | 1 cut(s) | 440 |
| BssECI | CCNNGG | 2 cut(s) | 138, 314 |
| BssMI | GATC | 2 cut(s) | 72, 114 |
| BssT1I | CCWWGG | 2 cut(s) | 138, 314 |
| Bst4CI | ACNGT | 2 cut(s) | 37, 378 |
| Bst6I | CTCTTC | 2 cut(s) | 54, 344 |
| BstC8I | GCNNGC | 2 cut(s) | 135, 402 |
| BstDSI | CCRYGG | 1 cut(s) | 314 |
| BstF5I | GGATG | 1 cut(s) | 397 |
| BstHHI | GCGC | 1 cut(s) | 357 |
| BstKTI | GATC | 2 cut(s) | 75, 117 |
| BstMAI | GTCTC | 2 cut(s) | 244, 384 |
| BstMBI | GATC | 2 cut(s) | 72, 114 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 134 |
| BstV1I | GCAGC | 1 cut(s) | 66 |
| BstV2I | GAAGAC | 1 cut(s) | 401 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 161 |
| BsuRI | GGCC | 1 cut(s) | 271 |
| BtgI | CCRYGG | 1 cut(s) | 314 |
| BtsCI | GGATG | 1 cut(s) | 397 |
| Cac8I | GCNNGC | 2 cut(s) | 135, 402 |
| CfoI | GCGC | 1 cut(s) | 357 |
| Cfr13I | GGNCC | 1 cut(s) | 148 |
| CviAII | CATG | 3 cut(s) | 130, 216, 315 |
| CviJI | RGCY | 7 cut(s) | 57, 70, 271, 281, 322, 400, 404 |
| CviKI_1 | RGCY | 7 cut(s) | 57, 70, 271, 281, 322, 400, 404 |
| DpnI | GATC | 2 cut(s) | 74, 116 |
| DpnII | GATC | 2 cut(s) | 72, 114 |
| Eam1104I | CTCTTC | 2 cut(s) | 54, 344 |
| EarI | CTCTTC | 2 cut(s) | 54, 344 |
| Eco130I | CCWWGG | 2 cut(s) | 138, 314 |
| Eco31I | GGTCTC | 2 cut(s) | 244, 384 |
| Eco47I | GGWCC | 1 cut(s) | 148 |
| EcoT14I | CCWWGG | 2 cut(s) | 138, 314 |
| ErhI | CCWWGG | 2 cut(s) | 138, 314 |
| FaeI | CATG | 3 cut(s) | 133, 219, 318 |
| FaiI | YATR | 6 cut(s) | 77, 131, 217, 316, 330, 389 |
| FatI | CATG | 3 cut(s) | 129, 215, 314 |
| FauI | CCCGC | 1 cut(s) | 414 |
| FbaI | TGATCA | 1 cut(s) | 72 |
| Fnu4HI | GCNGC | 3 cut(s) | 55, 269, 333 |
| FokI | GGATG | 1 cut(s) | 404 |
| Fsp4HI | GCNGC | 3 cut(s) | 55, 269, 333 |
| FspBI | CTAG | 1 cut(s) | 401 |
| GlaI | GCGC | 1 cut(s) | 356 |
| GluI | GCNGC | 3 cut(s) | 55, 269, 333 |
| HaeIII | GGCC | 1 cut(s) | 271 |
| HapII | CCGG | 1 cut(s) | 383 |
| HhaI | GCGC | 1 cut(s) | 357 |
| Hin1II | CATG | 3 cut(s) | 133, 219, 318 |
| Hin6I | GCGC | 1 cut(s) | 355 |
| HinP1I | GCGC | 1 cut(s) | 355 |
| HinfI | GANTC | 1 cut(s) | 44 |
| HpaII | CCGG | 1 cut(s) | 383 |
| HphI | GGTGA | 3 cut(s) | 204, 358, 436 |
| Hpy166II | GTNNAC | 1 cut(s) | 151 |
| Hpy188I | TCNGA | 2 cut(s) | 112, 249 |
| Hpy188III | TCNNGA | 1 cut(s) | 383 |
| Hpy8I | GTNNAC | 1 cut(s) | 151 |
| HpyAV | CCTTC | 2 cut(s) | 253, 337 |
| HpyCH4III | ACNGT | 2 cut(s) | 37, 378 |
| HpyCH4V | TGCA | 2 cut(s) | 219, 373 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 134 |
| Hsp92II | CATG | 3 cut(s) | 133, 219, 318 |
| HspAI | GCGC | 1 cut(s) | 355 |
| Kpn2I | TCCGGA | 1 cut(s) | 382 |
| Ksp22I | TGATCA | 1 cut(s) | 72 |
| Kzo9I | GATC | 2 cut(s) | 72, 114 |
| LmnI | GCTCC | 1 cut(s) | 62 |
| LpnPI | CCDG | 6 cut(s) | 210, 281, 285, 390, 396, 400 |
| Lsp1109I | GCAGC | 1 cut(s) | 66 |
| LweI | GCATC | 2 cut(s) | 301, 344 |
| MaeI | CTAG | 1 cut(s) | 401 |
| MaeIII | GTNAC | 2 cut(s) | 26, 424 |
| MalI | GATC | 2 cut(s) | 74, 116 |
| MboI | GATC | 2 cut(s) | 72, 114 |
| MboII | GAAGA | 5 cut(s) | 16, 41, 352, 361, 401 |
| MlyI | GAGTC | 1 cut(s) | 38 |
| MmeI | TCCRAC | 1 cut(s) | 108 |
| MnlI | CCTC | 5 cut(s) | 108, 220, 249, 255, 345 |
| MroI | TCCGGA | 1 cut(s) | 382 |
| MslI | CAYNNNNRTG | 1 cut(s) | 159 |
| MspI | CCGG | 1 cut(s) | 383 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 134 |
| NcoI | CCATGG | 1 cut(s) | 314 |
| NdeII | GATC | 2 cut(s) | 72, 114 |
| NheI | GCTAGC | 1 cut(s) | 400 |
| NlaIII | CATG | 3 cut(s) | 133, 219, 318 |
| NlaIV | GGNNCC | 1 cut(s) | 149 |
| NmuCI | GTSAC | 1 cut(s) | 424 |
| PkrI | GCNGC | 3 cut(s) | 56, 270, 334 |
| PleI | GAGTC | 1 cut(s) | 38 |
| PpsI | GAGTC | 1 cut(s) | 38 |
| PspN4I | GGNNCC | 1 cut(s) | 149 |
| PspPI | GGNCC | 1 cut(s) | 148 |
| RseI | CAYNNNNRTG | 1 cut(s) | 159 |
| SatI | GCNGC | 3 cut(s) | 55, 269, 333 |
| Sau3AI | GATC | 2 cut(s) | 72, 114 |
| Sau96I | GGNCC | 1 cut(s) | 148 |
| SchI | GAGTC | 1 cut(s) | 38 |
| SetI | ASST | 9 cut(s) | 59, 72, 144, 264, 300, 324, 348, 402, 406 |
| SfaNI | GCATC | 2 cut(s) | 301, 344 |
| SinI | GGWCC | 1 cut(s) | 148 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 159 |
| SsiI | CCGC | 4 cut(s) | 103, 268, 332, 421 |
| SspMI | CTAG | 1 cut(s) | 401 |
| StyI | CCWWGG | 2 cut(s) | 138, 314 |
| TaaI | ACNGT | 2 cut(s) | 37, 378 |
| TaqI | TCGA | 4 cut(s) | 42, 117, 324, 338 |
| TauI | GCSGC | 2 cut(s) | 271, 335 |
| TseFI | GTSAC | 1 cut(s) | 424 |
| TseI | GCWGC | 1 cut(s) | 54 |
| Tsp45I | GTSAC | 1 cut(s) | 424 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| VpaK11BI | GGWCC | 1 cut(s) | 148 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 158 |
| XspI | CTAG | 1 cut(s) | 401 |