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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 370, 513 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 277, 278, 519 |
| AgsI | TTSAA | 4 cut(s) | 11, 85, 351, 482 |
| AluBI | AGCT | 2 cut(s) | 337, 395 |
| AluI | AGCT | 2 cut(s) | 337, 395 |
| Alw26I | GTCTC | 2 cut(s) | 22, 503 |
| AoxI | GGCC | 1 cut(s) | 284 |
| ApeKI | GCWGC | 1 cut(s) | 232 |
| AspA2I | CCTAGG | 1 cut(s) | 272 |
| AspLEI | GCGC | 1 cut(s) | 232 |
| AsuC2I | CCSGG | 1 cut(s) | 244 |
| AvrII | CCTAGG | 1 cut(s) | 272 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 405, 438 |
| BanII | GRGCYC | 1 cut(s) | 266 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 119, 151 |
| BbsI | GAAGAC | 1 cut(s) | 497 |
| BbvI | GCAGC | 1 cut(s) | 244 |
| BceAI | ACGGC | 1 cut(s) | 500 |
| BclI | TGATCA | 1 cut(s) | 111 |
| BcnI | CCSGG | 1 cut(s) | 244 |
| BcoDI | GTCTC | 2 cut(s) | 22, 503 |
| BfaI | CTAG | 4 cut(s) | 90, 186, 225, 273 |
| BglII | AGATCT | 1 cut(s) | 321 |
| BisI | GCNGC | 2 cut(s) | 233, 371 |
| BlnI | CCTAGG | 1 cut(s) | 272 |
| BlsI | GCNGC | 2 cut(s) | 234, 372 |
| Bme1390I | CCNGG | 1 cut(s) | 244 |
| BmiI | GGNNCC | 2 cut(s) | 211, 432 |
| BmrFI | CCNGG | 1 cut(s) | 244 |
| BmsI | GCATC | 4 cut(s) | 41, 108, 244, 553 |
| BpiI | GAAGAC | 1 cut(s) | 497 |
| BpmI | CTGGAG | 1 cut(s) | 105 |
| BpuMI | CCSGG | 1 cut(s) | 244 |
| BsaI | GGTCTC | 1 cut(s) | 503 |
| BsaJI | CCNNGG | 3 cut(s) | 272, 329, 516 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 277, 278, 519 |
| Bse1I | ACTGG | 1 cut(s) | 122 |
| BseDI | CCNNGG | 3 cut(s) | 272, 329, 516 |
| BseGI | GGATG | 2 cut(s) | 412, 568 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 277, 278, 519 |
| BseMII | CTCAG | 1 cut(s) | 477 |
| BseNI | ACTGG | 1 cut(s) | 122 |
| BseRI | GAGGAG | 3 cut(s) | 332, 470, 521 |
| BseXI | GCAGC | 1 cut(s) | 244 |
| BseYI | CCCAGC | 1 cut(s) | 337 |
| BshFI | GGCC | 1 cut(s) | 286 |
| BsiSI | CCGG | 2 cut(s) | 197, 243 |
| BslFI | GGGAC | 1 cut(s) | 355 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 277, 278, 519 |
| BsmAI | GTCTC | 2 cut(s) | 22, 503 |
| BsmFI | GGGAC | 1 cut(s) | 355 |
| BsnI | GGCC | 1 cut(s) | 286 |
| Bso31I | GGTCTC | 1 cut(s) | 503 |
| Bsp1286I | GDGCHC | 1 cut(s) | 266 |
| Bsp143I | GATC | 3 cut(s) | 24, 111, 321 |
| BspACI | CCGC | 2 cut(s) | 370, 513 |
| BspANI | GGCC | 1 cut(s) | 286 |
| BspCNI | CTCAG | 1 cut(s) | 478 |
| BspLI | GGNNCC | 2 cut(s) | 211, 432 |
| BspQI | GCTCTTC | 1 cut(s) | 155 |
| BspTNI | GGTCTC | 1 cut(s) | 503 |
| BsrI | ACTGG | 1 cut(s) | 122 |
| BssECI | CCNNGG | 3 cut(s) | 272, 329, 516 |
| BssMI | GATC | 3 cut(s) | 24, 111, 321 |
| BssT1I | CCWWGG | 2 cut(s) | 272, 329 |
| Bst4CI | ACNGT | 5 cut(s) | 313, 346, 478, 499, 550 |
| Bst6I | CTCTTC | 1 cut(s) | 155 |
| BstC8I | GCNNGC | 1 cut(s) | 132 |
| BstDEI | CTNAG | 2 cut(s) | 354, 486 |
| BstDSI | CCRYGG | 1 cut(s) | 516 |
| BstF5I | GGATG | 2 cut(s) | 412, 568 |
| BstHHI | GCGC | 1 cut(s) | 232 |
| BstKTI | GATC | 3 cut(s) | 27, 114, 324 |
| BstMAI | GTCTC | 2 cut(s) | 22, 503 |
| BstMBI | GATC | 3 cut(s) | 24, 111, 321 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 392 |
| BstSCI | CCNGG | 1 cut(s) | 242 |
| BstV1I | GCAGC | 1 cut(s) | 244 |
| BstV2I | GAAGAC | 1 cut(s) | 497 |
| BstX2I | RGATCY | 1 cut(s) | 321 |
| BstYI | RGATCY | 1 cut(s) | 321 |
| BsuRI | GGCC | 1 cut(s) | 286 |
| BtgI | CCRYGG | 1 cut(s) | 516 |
| BtsCI | GGATG | 2 cut(s) | 412, 568 |
| BtsI | GCAGTG | 1 cut(s) | 426 |
| BtsIMutI | CAGTG | 2 cut(s) | 129, 426 |
| Cac8I | GCNNGC | 1 cut(s) | 132 |
| CfoI | GCGC | 1 cut(s) | 232 |
| CviAII | CATG | 2 cut(s) | 22, 403 |
| DdeI | CTNAG | 2 cut(s) | 354, 486 |
| DpnI | GATC | 3 cut(s) | 26, 113, 323 |
| DpnII | GATC | 3 cut(s) | 24, 111, 321 |
| Eam1104I | CTCTTC | 1 cut(s) | 155 |
| EarI | CTCTTC | 1 cut(s) | 155 |
| Eco130I | CCWWGG | 2 cut(s) | 272, 329 |
| Eco147I | AGGCCT | 1 cut(s) | 286 |
| Eco24I | GRGCYC | 1 cut(s) | 266 |
| Eco31I | GGTCTC | 1 cut(s) | 503 |
| EcoT14I | CCWWGG | 2 cut(s) | 272, 329 |
| EcoT38I | GRGCYC | 1 cut(s) | 266 |
| ErhI | CCWWGG | 2 cut(s) | 272, 329 |
| FaeI | CATG | 2 cut(s) | 25, 406 |
| FaiI | YATR | 8 cut(s) | 23, 176, 203, 221, 381, 404, 452, 536 |
| FaqI | GGGAC | 1 cut(s) | 355 |
| FatI | CATG | 2 cut(s) | 21, 402 |
| FbaI | TGATCA | 1 cut(s) | 111 |
| Fnu4HI | GCNGC | 2 cut(s) | 233, 371 |
| FokI | GGATG | 2 cut(s) | 419, 575 |
| FriOI | GRGCYC | 1 cut(s) | 266 |
| Fsp4HI | GCNGC | 2 cut(s) | 233, 371 |
| FspBI | CTAG | 4 cut(s) | 90, 186, 225, 273 |
| GlaI | GCGC | 1 cut(s) | 231 |
| GluI | GCNGC | 2 cut(s) | 233, 371 |
| GsaI | CCCAGC | 1 cut(s) | 341 |
| GsuI | CTGGAG | 1 cut(s) | 105 |
| HaeIII | GGCC | 1 cut(s) | 286 |
| HapII | CCGG | 2 cut(s) | 197, 243 |
| HhaI | GCGC | 1 cut(s) | 232 |
| Hin1II | CATG | 2 cut(s) | 25, 406 |
| Hin6I | GCGC | 1 cut(s) | 230 |
| HinP1I | GCGC | 1 cut(s) | 230 |
| HindIII | AAGCTT | 1 cut(s) | 393 |
| HinfI | GANTC | 2 cut(s) | 11, 482 |
| HpaII | CCGG | 2 cut(s) | 197, 243 |
| Hpy188I | TCNGA | 1 cut(s) | 487 |
| Hpy99I | CGWCG | 1 cut(s) | 78 |
| HpyAV | CCTTC | 3 cut(s) | 79, 163, 436 |
| HpyCH4III | ACNGT | 5 cut(s) | 313, 346, 478, 499, 550 |
| HpyCH4V | TGCA | 1 cut(s) | 32 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 392 |
| HpyF3I | CTNAG | 2 cut(s) | 354, 486 |
| Hsp92II | CATG | 2 cut(s) | 25, 406 |
| HspAI | GCGC | 1 cut(s) | 230 |
| Ksp22I | TGATCA | 1 cut(s) | 111 |
| Kzo9I | GATC | 3 cut(s) | 24, 111, 321 |
| LguI | GCTCTTC | 1 cut(s) | 155 |
| LpnPI | CCDG | 8 cut(s) | 23, 29, 135, 150, 210, 256, 323, 447 |
| Lsp1109I | GCAGC | 1 cut(s) | 244 |
| LweI | GCATC | 4 cut(s) | 41, 108, 244, 553 |
| MaeI | CTAG | 4 cut(s) | 90, 186, 225, 273 |
| MaeIII | GTNAC | 2 cut(s) | 472, 544 |
| MalI | GATC | 3 cut(s) | 26, 113, 323 |
| MboI | GATC | 3 cut(s) | 24, 111, 321 |
| MboII | GAAGA | 3 cut(s) | 142, 422, 502 |
| MfeI | CAATTG | 1 cut(s) | 107 |
| MflI | RGATCY | 1 cut(s) | 321 |
| MhlI | GDGCHC | 1 cut(s) | 266 |
| MluCI | AATT | 2 cut(s) | 107, 374 |
| MmeI | TCCRAC | 1 cut(s) | 36 |
| MnlI | CCTC | 7 cut(s) | 150, 247, 310, 421, 448, 499, 517 |
| MseI | TTAA | 1 cut(s) | 363 |
| MspI | CCGG | 2 cut(s) | 197, 243 |
| MspR9I | CCNGG | 1 cut(s) | 244 |
| MunI | CAATTG | 1 cut(s) | 107 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 392 |
| NciI | CCSGG | 1 cut(s) | 244 |
| NdeII | GATC | 3 cut(s) | 24, 111, 321 |
| NlaIII | CATG | 2 cut(s) | 25, 406 |
| NlaIV | GGNNCC | 2 cut(s) | 211, 432 |
| PceI | AGGCCT | 1 cut(s) | 286 |
| PciSI | GCTCTTC | 1 cut(s) | 155 |
| PfeI | GAWTC | 2 cut(s) | 11, 482 |
| PkrI | GCNGC | 2 cut(s) | 234, 372 |
| PspFI | CCCAGC | 1 cut(s) | 337 |
| PspN4I | GGNNCC | 2 cut(s) | 211, 432 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 537, 569 |
| PsuI | RGATCY | 1 cut(s) | 321 |
| SapI | GCTCTTC | 1 cut(s) | 155 |
| SaqAI | TTAA | 1 cut(s) | 363 |
| SatI | GCNGC | 2 cut(s) | 233, 371 |
| Sau3AI | GATC | 3 cut(s) | 24, 111, 321 |
| ScrFI | CCNGG | 1 cut(s) | 244 |
| SduI | GDGCHC | 1 cut(s) | 266 |
| SetI | ASST | 6 cut(s) | 48, 258, 339, 397, 432, 447 |
| SfaNI | GCATC | 4 cut(s) | 41, 108, 244, 553 |
| Sse9I | AATT | 2 cut(s) | 107, 374 |
| SseBI | AGGCCT | 1 cut(s) | 286 |
| SsiI | CCGC | 2 cut(s) | 370, 513 |
| SspMI | CTAG | 4 cut(s) | 90, 186, 225, 273 |
| StuI | AGGCCT | 1 cut(s) | 286 |
| StyD4I | CCNGG | 1 cut(s) | 242 |
| StyI | CCWWGG | 2 cut(s) | 272, 329 |
| TaaI | ACNGT | 5 cut(s) | 313, 346, 478, 499, 550 |
| TaqI | TCGA | 1 cut(s) | 153 |
| TasI | AATT | 2 cut(s) | 107, 374 |
| TauI | GCSGC | 1 cut(s) | 373 |
| TfiI | GAWTC | 2 cut(s) | 11, 482 |
| Tru1I | TTAA | 1 cut(s) | 363 |
| Tru9I | TTAA | 1 cut(s) | 363 |
| TscAI | CASTG | 2 cut(s) | 129, 426 |
| TseI | GCWGC | 1 cut(s) | 232 |
| TspDTI | ATGAA | 2 cut(s) | 368, 423 |
| TspGWI | ACGGA | 1 cut(s) | 62 |
| TspRI | CASTG | 2 cut(s) | 129, 426 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 394 |
| XmaJI | CCTAGG | 1 cut(s) | 272 |
| XspI | CTAG | 4 cut(s) | 90, 186, 225, 273 |