RLG00000020638

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000109
Physical Location & Seq
Reverse (-)
66997242 .. 66997955
714 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020638

Sequence Viewer

Length: 453 bp
ATGGGTCCGACATGTGGTCTCATCCCTCGTGAAGCAGGTTTTCCTTTTCTAACTTTTGAGTTCGTGGCGGGGGCGGACGCCACAGTCCAGCTCAAGTATGAGAGGATGGTGGGTTACTGCAAAACCTATAGCTTTCTGAAGCACCCAAGTTCCGACTGTATTGGGCAGCCTATGCCGGTCGCTGATGCTCCGGTGGCGACAATATCTCCAACTCCGCCTTCCCTAGCGCTTGAGGCCATTACAGGCAAGAAGCGAGCTGGTGTGTCTCCTACCAAGAAGGCCAAGTTAGGAAGAGCTCCGGGGAGGAAGAATAACCCCAAATCGGAGGGCATGCAACTTAAGAAGCTGAAGATGCTTGGGGAAGCCAAACCCAAGGAAGAAGAGGGCTTTCAAGGCCACTTTGAAAGCTCCCGAGCTGGAGGAGAACATGGAGGCAACTGTGGAGGAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

15.84

Weight (kDa)

9.34

Isoelectric Point (pI)

35.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 83
Acc36I ACCTGC 1 cut(s) 26
AciI CCGC 3 cut(s) 68, 74, 215
AcuI CTGAAG 2 cut(s) 158, 368
AcyI GRCGYC 1 cut(s) 78
AfeI AGCGCT 1 cut(s) 228
AfiI CCNNNNNNNGG 2 cut(s) 14, 322
AflII CTTAAG 1 cut(s) 338
AflIII ACRYGT 1 cut(s) 11
AgsI TTSAA 2 cut(s) 392, 404
AhdI GACNNNNNGTC 1 cut(s) 15
AjuI GAANNNNNNNTTGG 2 cut(s) 202, 234
AluBI AGCT 7 cut(s) 91, 132, 257, 296, 346, 408, 416
AluI AGCT 7 cut(s) 91, 132, 257, 296, 346, 408, 416
Alw21I GWGCWC 1 cut(s) 298
Alw26I GTCTC 2 cut(s) 23, 270
Ama87I CYCGRG 1 cut(s) 411
Aor51HI AGCGCT 1 cut(s) 228
AoxI GGCC 3 cut(s) 234, 279, 394
ApeKI GCWGC 1 cut(s) 166
AspLEI GCGC 1 cut(s) 229
AspS9I GGNCC 1 cut(s) 5
AsuC2I CCSGG 1 cut(s) 300
AvaI CYCGRG 1 cut(s) 411
AvaII GGWCC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 298
BauI CACGAG 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 298
BbvI GCAGC 1 cut(s) 178
BccI CCATC 1 cut(s) 100
BcnI CCSGG 1 cut(s) 300
BcoDI GTCTC 2 cut(s) 23, 270
BfaI CTAG 1 cut(s) 224
BfmI CTRYAG 1 cut(s) 127
BfoI RGCGCY 1 cut(s) 230
BfrI CTTAAG 1 cut(s) 338
BfuAI ACCTGC 1 cut(s) 26
BisI GCNGC 1 cut(s) 167
BlsI GCNGC 1 cut(s) 168
Bme1390I CCNGG 1 cut(s) 300
Bme18I GGWCC 1 cut(s) 5
BmeRI GACNNNNNGTC 1 cut(s) 15
BmeT110I CYCGRG 1 cut(s) 411
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 300
BmsI GCATC 2 cut(s) 175, 342
BpmI CTGGAG 1 cut(s) 438
BpuEI CTTGAG 2 cut(s) 77, 251
BpuMI CCSGG 1 cut(s) 300
BsaHI GRCGYC 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 299, 372
BsaWI WCCGGW 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 322
Bse118I RCCGGY 1 cut(s) 175
BseDI CCNNGG 2 cut(s) 299, 372
BseGI GGATG 2 cut(s) 21, 111
BseLI CCNNNNNNNGG 2 cut(s) 14, 322
BseRI GAGGAG 1 cut(s) 435
BseXI GCAGC 1 cut(s) 178
Bsh1285I CGRYCG 1 cut(s) 180
BshFI GGCC 3 cut(s) 236, 281, 396
BsiEI CGRYCG 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 298
BsiHKCI CYCGRG 1 cut(s) 411
BsiSI CCGG 3 cut(s) 176, 191, 299
BslI CCNNNNNNNGG 2 cut(s) 14, 322
BsmAI GTCTC 2 cut(s) 23, 270
BsnI GGCC 3 cut(s) 236, 281, 396
Bso31I GGTCTC 1 cut(s) 23
BsoBI CYCGRG 1 cut(s) 411
Bsp1286I GDGCHC 1 cut(s) 298
BspACI CCGC 3 cut(s) 68, 74, 215
BspANI GGCC 3 cut(s) 236, 281, 396
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 26
BspQI GCTCTTC 1 cut(s) 286
BspTI CTTAAG 1 cut(s) 338
BspTNI GGTCTC 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 175
BssAI RCCGGY 1 cut(s) 175
BssECI CCNNGG 2 cut(s) 299, 372
BssNI GRCGYC 1 cut(s) 78
BssSI CACGAG 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 372
Bst2BI CACGAG 1 cut(s) 27
Bst4CI ACNGT 3 cut(s) 85, 158, 440
Bst6I CTCTTC 2 cut(s) 286, 375
BstACI GRCGYC 1 cut(s) 78
BstAFI CTTAAG 1 cut(s) 338
BstAPI GCANNNNNTGC 1 cut(s) 172
BstC8I GCNNGC 2 cut(s) 255, 332
BstF5I GGATG 2 cut(s) 21, 111
BstH2I RGCGCY 1 cut(s) 230
BstHHI GCGC 1 cut(s) 229
BstMAI GTCTC 2 cut(s) 23, 270
BstMCI CGRYCG 1 cut(s) 180
BstMWI GCNNNNNNNGC 5 cut(s) 172, 194, 233, 352, 393
BstNSI RCATGY 2 cut(s) 15, 334
BstSCI CCNGG 1 cut(s) 298
BstSFI CTRYAG 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 178
BsuRI GGCC 3 cut(s) 236, 281, 396
BtsCI GGATG 2 cut(s) 21, 111
BveI ACCTGC 1 cut(s) 26
Cac8I GCNNGC 2 cut(s) 255, 332
CfoI GCGC 1 cut(s) 229
Cfr10I RCCGGY 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 5
CseI GACGC 1 cut(s) 86
CviAII CATG 3 cut(s) 12, 331, 428
DrdI GACNNNNNNGTC 1 cut(s) 83
DriI GACNNNNNGTC 1 cut(s) 15
DseDI GACNNNNNNGTC 1 cut(s) 83
Eam1104I CTCTTC 2 cut(s) 286, 375
Eam1105I GACNNNNNGTC 1 cut(s) 15
EarI CTCTTC 2 cut(s) 286, 375
EciI GGCGGA 2 cut(s) 89, 204
Ecl136II GAGCTC 1 cut(s) 296
Eco130I CCWWGG 1 cut(s) 372
Eco24I GRGCYC 1 cut(s) 298
Eco31I GGTCTC 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 5
Eco47III AGCGCT 1 cut(s) 228
Eco53kI GAGCTC 1 cut(s) 296
Eco57I CTGAAG 2 cut(s) 158, 368
Eco88I CYCGRG 1 cut(s) 411
EcoICRI GAGCTC 1 cut(s) 296
EcoT14I CCWWGG 1 cut(s) 372
EcoT38I GRGCYC 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 3 cut(s) 15, 334, 431
FaiI YATR 7 cut(s) 13, 99, 129, 173, 332, 429, 451
FatI CATG 3 cut(s) 11, 330, 427
FauI CCCGC 1 cut(s) 61
Fnu4HI GCNGC 1 cut(s) 167
FokI GGATG 2 cut(s) 8, 118
FriOI GRGCYC 1 cut(s) 298
Fsp4HI GCNGC 1 cut(s) 167
FspBI CTAG 1 cut(s) 224
GlaI GCGC 1 cut(s) 228
GluI GCNGC 1 cut(s) 167
GsuI CTGGAG 1 cut(s) 438
HaeII RGCGCY 1 cut(s) 230
HaeIII GGCC 3 cut(s) 236, 281, 396
HapII CCGG 3 cut(s) 176, 191, 299
HgaI GACGC 1 cut(s) 86
HhaI GCGC 1 cut(s) 229
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 3 cut(s) 15, 334, 431
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HpaII CCGG 3 cut(s) 176, 191, 299
Hpy188I TCNGA 4 cut(s) 9, 138, 154, 325
Hpy188III TCNNGA 2 cut(s) 29, 411
HpyAV CCTTC 2 cut(s) 228, 271
HpyCH4III ACNGT 3 cut(s) 85, 158, 440
HpyCH4V TGCA 2 cut(s) 120, 334
HpyF10VI GCNNNNNNNGC 5 cut(s) 172, 194, 233, 352, 393
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 3 cut(s) 15, 334, 431
HspAI GCGC 1 cut(s) 227
LguI GCTCTTC 1 cut(s) 286
LmnI GCTCC 4 cut(s) 193, 301, 413, 446
LpnPI CCDG 8 cut(s) 21, 101, 189, 204, 228, 243, 312, 402
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 2 cut(s) 175, 342
MaeI CTAG 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 113
MboII GAAGA 5 cut(s) 303, 319, 361, 389, 392
MhlI GDGCHC 1 cut(s) 298
MmeI TCCRAC 3 cut(s) 32, 177, 233
MnlI CCTC 9 cut(s) 36, 96, 226, 297, 319, 376, 413, 425, 437
MseI TTAA 1 cut(s) 339
MspCI CTTAAG 1 cut(s) 338
MspI CCGG 3 cut(s) 176, 191, 299
MspR9I CCNGG 1 cut(s) 300
MwoI GCNNNNNNNGC 5 cut(s) 172, 194, 233, 352, 393
NciI CCSGG 1 cut(s) 300
NlaIII CATG 3 cut(s) 15, 334, 431
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 2 cut(s) 15, 334
PaeI GCATGC 1 cut(s) 334
PciI ACATGT 1 cut(s) 11
PciSI GCTCTTC 1 cut(s) 286
PkrI GCNGC 1 cut(s) 168
PscI ACATGT 1 cut(s) 11
Psp124BI GAGCTC 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 5
SacI GAGCTC 1 cut(s) 298
SapI GCTCTTC 1 cut(s) 286
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 1 cut(s) 167
Sau96I GGNCC 1 cut(s) 5
ScrFI CCNGG 1 cut(s) 300
SduI GDGCHC 1 cut(s) 298
SetI ASST 9 cut(s) 40, 93, 128, 134, 259, 298, 348, 410, 418
SfaNI GCATC 2 cut(s) 175, 342
SfcI CTRYAG 1 cut(s) 127
SinI GGWCC 1 cut(s) 5
SmlI CTYRAG 3 cut(s) 92, 230, 338
SmoI CTYRAG 3 cut(s) 92, 230, 338
SphI GCATGC 1 cut(s) 334
SsiI CCGC 3 cut(s) 68, 74, 215
SspMI CTAG 1 cut(s) 224
SstI GAGCTC 1 cut(s) 298
StyD4I CCNGG 1 cut(s) 298
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 3 cut(s) 85, 158, 440
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TseI GCWGC 1 cut(s) 166
Vha464I CTTAAG 1 cut(s) 338
VpaK11BI GGWCC 1 cut(s) 5
XceI RCATGY 2 cut(s) 15, 334
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.